genome.fa.s13.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  125  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40197415--40197440	3	8.7	3	100	0	52	30	0	0	69	0.89
40202567--40202635	33	2.1	33	91	0	111	15	52	17	14	1.75
40203265--40203694	214	2.0	214	92	5	726	38	16	24	21	1.93
40203608--40203779	85	2.0	89	91	6	284	43	8	19	28	1.80
40204160--40204235	3	24.3	3	81	7	89	30	6	2	60	1.36
40204237--40204288	20	2.7	19	82	11	54	23	13	3	59	1.50
40204585--40204615	15	2.1	15	100	0	62	32	6	0	61	1.21
40204699--40204736	15	2.5	15	86	0	58	34	5	0	60	1.19
40213178--40213226	20	2.7	18	77	22	57	51	4	2	42	1.32
40215196--40215355	27	5.9	27	80	12	168	33	21	25	19	1.97
40215214--40215355	54	2.6	54	92	3	223	33	23	24	18	1.96
40215726--40215755	8	3.8	8	90	0	51	3	26	26	43	1.70
40218412--40218450	20	2.0	20	94	0	69	46	15	28	10	1.78
40223777--40223908	47	2.8	48	88	2	194	32	28	15	24	1.95
40226903--40227000	51	1.9	51	93	0	169	24	18	24	32	1.97
40226173--40228071	781	2.4	773	97	0	3584	30	24	18	26	1.98
40227683--40227768	44	2.0	44	95	0	154	24	15	27	32	1.95
40229479--40229508	15	1.9	16	93	6	53	26	0	0	73	0.84
40235975--40236198	40	5.6	40	83	6	240	25	27	21	25	1.99
40236130--40236207	40	1.9	41	82	10	97	26	28	20	24	1.99
40242563--40242640	37	2.1	37	97	0	147	38	15	7	38	1.76
40245754--40245799	24	2.0	23	86	4	65	32	21	23	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40252961--40253458	249	2.0	249	99	0	987	29	17	24	28	1.97
40255200--40255249	23	2.2	22	86	6	73	40	8	28	22	1.82
40256620--40256665	22	2.1	22	95	0	83	45	10	19	23	1.82
40257028--40257131	29	3.6	29	84	1	129	26	15	33	24	1.95
40262458--40262491	17	2.0	17	94	0	59	50	29	5	14	1.67
40263943--40264088	29	5.1	27	76	11	116	28	12	31	28	1.93
40263943--40264088	57	2.6	56	76	11	138	28	12	31	28	1.93
40265273--40265334	24	2.5	24	82	7	72	40	19	19	20	1.92
40273867--40273953	30	3.0	30	81	8	117	29	14	14	40	1.87
40273868--40274019	27	5.5	27	78	2	133	31	15	15	37	1.89
40273870--40274019	54	2.7	54	83	3	156	32	15	15	37	1.89
40273939--40274042	54	1.9	54	80	3	120	33	16	15	34	1.90
40274008--40274127	27	4.4	27	78	6	100	39	17	20	22	1.93
40278542--40278896	27	13.1	27	79	4	230	40	19	9	30	1.84
40279168--40279290	41	3.0	41	85	4	176	22	21	28	27	1.99
40281590--40281776	39	4.8	39	95	1	322	23	21	27	26	1.99
40281590--40281823	117	2.0	116	83	7	296	22	21	28	27	1.99
40282530--40282590	22	2.8	22	87	5	79	19	26	22	31	1.98
40286554--40286640	40	2.2	40	89	2	129	28	9	12	49	1.71
40289176--40289297	50	2.6	46	81	5	127	27	21	14	36	1.93
40291146--40291184	20	1.9	20	84	5	51	35	2	10	51	1.50
40303029--40303099	24	3.1	23	76	19	76	40	14	15	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40303024--40303090	21	3.0	21	79	16	73	37	14	17	29	1.91
40303711--40303762	24	2.1	25	96	3	97	28	13	3	53	1.57
40305902--40305958	24	2.4	23	77	8	60	71	0	21	7	1.08
40311548--40311634	40	2.2	40	87	2	120	29	9	12	48	1.72
40321817--40322073	40	6.4	40	82	4	315	23	21	27	27	1.99
40321817--40322073	80	3.2	80	92	2	394	23	21	27	27	1.99
40335434--40335586	40	3.8	40	84	5	204	22	21	28	27	1.99
40337142--40337297	51	3.1	51	97	0	285	27	3	15	53	1.59
40358808--40358874	33	2.0	34	82	8	84	29	22	22	25	1.99
40359138--40359198	26	2.3	26	82	0	77	34	19	18	27	1.95
40360481--40360515	14	2.4	15	85	4	54	71	20	8	0	1.11
40367425--40367483	13	4.5	13	70	16	50	28	8	25	37	1.85
40367425--40367488	26	2.5	26	76	0	74	31	7	25	35	1.84
40367661--40367719	30	2.0	29	83	12	75	50	0	1	47	1.11
40370826--40370854	12	2.4	12	100	0	58	0	10	37	51	1.36
40374844--40374943	34	2.9	34	86	0	137	26	20	24	30	1.98
40389114--40389286	46	3.7	46	76	13	183	31	27	18	22	1.97
40389120--40389289	93	1.8	93	90	0	277	31	28	18	22	1.97
40392526--40392701	54	3.3	53	80	5	194	38	21	9	31	1.85
40392533--40392699	27	6.2	27	77	7	117	39	19	9	31	1.84
40392679--40392851	27	6.4	27	89	0	256	30	23	6	39	1.81
40392652--40392835	81	2.3	81	83	1	199	33	22	7	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40392856--40393237	27	14.2	27	83	4	441	35	19	19	25	1.95
40393479--40393530	27	2.0	26	88	3	77	17	25	21	36	1.94
40393649--40393801	6	24.8	6	76	15	143	16	18	16	47	1.83
40393649--40393765	31	3.6	31	81	13	153	17	18	17	47	1.84
40393649--40393801	37	4.3	35	82	9	154	16	18	16	47	1.83
40393677--40393810	43	3.1	42	88	4	153	17	17	17	47	1.83
40399468--40399638	93	1.8	93	92	0	288	29	27	20	22	1.99
40399463--40399635	46	3.7	46	77	10	199	30	26	20	23	1.98
40400058--40400117	30	2.0	30	83	0	75	33	23	6	36	1.81
40400068--40400499	233	1.9	233	100	0	864	25	22	10	41	1.85
40403343--40403406	31	2.1	30	88	2	92	25	21	14	39	1.91
40403598--40403768	25	7.0	24	85	6	195	28	22	19	29	1.98
40403826--40403882	9	5.9	9	73	15	51	35	21	8	35	1.84
40403814--40403884	20	3.5	20	94	0	124	32	21	11	35	1.89
40403819--40403873	11	5.4	11	70	16	55	30	20	12	36	1.90
40405126--40405209	27	3.1	27	89	3	125	21	26	21	30	1.98
40405271--40405322	27	1.9	27	84	7	70	36	11	11	40	1.78
40405354--40405516	27	6.0	27	77	11	154	31	9	19	38	1.85
40405359--40405553	81	2.4	81	87	2	259	30	9	21	38	1.85
40405361--40405539	54	3.3	52	80	9	155	30	9	20	40	1.84
40405361--40405539	27	6.7	26	77	11	130	30	9	20	40	1.84
40405532--40405715	27	6.8	27	88	2	235	36	8	25	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40405359--40405577	81	2.7	81	83	3	183	32	9	20	36	1.85
40405721--40405810	27	3.3	27	85	3	119	32	11	15	41	1.82
40405721--40405825	27	3.9	27	81	7	90	34	10	15	40	1.81
40411491--40411605	46	2.5	46	80	1	124	19	17	13	50	1.78
40411640--40411741	45	2.3	46	88	6	147	23	20	18	37	1.94
40411742--40411835	46	2.0	47	89	2	145	19	12	18	50	1.78
40413506--40413598	40	2.3	42	87	7	129	32	16	20	31	1.94
40413587--40413680	41	2.3	41	96	0	170	23	15	29	30	1.96
40413526--40413705	41	4.4	40	80	7	139	29	16	23	30	1.96
40416905--40416985	41	2.0	41	95	0	144	41	19	19	18	1.90
40417334--40417485	55	2.8	55	91	0	232	29	28	13	27	1.94
40417334--40417485	27	5.6	27	92	3	223	29	28	13	27	1.94
40417363--40417504	27	5.2	27	77	13	78	30	29	12	26	1.93
40420309--40420372	31	2.1	31	90	0	101	25	23	14	37	1.92
40420565--40420710	25	6.0	23	83	11	177	26	22	21	29	1.99
40420565--40420710	49	3.0	48	86	7	190	26	22	21	29	1.99
40420756--40420826	20	3.5	20	90	0	115	30	21	11	36	1.88
40422053--40422140	27	3.3	28	83	13	98	26	25	19	29	1.98
40422068--40422151	27	3.1	27	89	3	116	22	26	20	30	1.98
40422213--40422264	27	1.9	27	84	7	70	36	11	11	40	1.78
40422296--40422539	27	9.0	27	77	10	239	31	9	19	39	1.84
40422301--40422576	81	3.4	81	92	1	430	30	9	20	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40422555--40422738	27	6.8	27	86	2	208	37	7	25	29	1.83
40422555--40422738	54	3.4	54	84	3	235	37	7	25	29	1.83
40422744--40422833	27	3.3	27	85	3	119	32	11	16	40	1.84
40422717--40422838	54	2.2	54	78	7	131	31	9	19	39	1.84
40422744--40422848	27	3.9	27	78	9	90	34	10	16	39	1.83
40428512--40428563	22	2.5	21	71	6	52	78	3	1	15	0.98
40428804--40428837	18	1.9	17	88	5	50	50	11	5	32	1.63
40433981--40434030	25	2.0	25	84	0	64	10	30	0	60	1.30
40436446--40436483	19	2.0	19	100	0	76	31	10	26	31	1.90
40436489--40436563	34	2.2	34	92	0	123	40	16	24	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310