genome.fa.s13.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  212  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69482783--69483205	99	4.4	98	83	8	467	22	30	18	28	1.97
69482784--69483206	149	2.9	142	82	7	473	23	30	18	27	1.97
69483891--69483915	12	2.1	12	100	0	50	60	16	8	16	1.58
69488722--69488761	15	2.6	15	84	4	53	77	0	7	15	0.98
69489671--69489745	37	2.0	37	86	0	105	13	20	30	36	1.91
69491424--69491520	48	2.0	48	100	0	194	28	16	8	46	1.76
69495461--69495625	82	2.0	82	91	0	267	26	26	13	33	1.94
69498345--69498630	144	2.0	144	81	2	333	24	24	21	29	1.99
69499572--69499670	42	2.3	43	81	5	112	20	34	30	15	1.93
69514214--69514449	124	1.9	125	86	2	341	30	19	6	42	1.78
69518698--69518737	18	2.2	18	86	0	53	47	5	32	15	1.66
69521190--69521304	45	2.6	44	79	6	124	44	15	19	20	1.87
69521286--69521454	45	3.8	45	83	1	196	39	15	19	25	1.92
69521286--69521457	90	1.9	90	86	0	245	38	16	19	25	1.92
69521289--69521487	90	2.2	89	81	3	218	40	16	19	24	1.90
69521469--69521583	45	2.5	45	83	4	133	46	14	18	20	1.84
69524500--69524589	17	5.2	17	71	12	67	31	32	20	16	1.95
69525369--69525404	17	2.0	18	89	10	56	22	0	2	75	0.94
69529262--69529300	4	9.8	4	94	0	60	46	23	5	25	1.73
69529263--69529329	16	4.2	16	78	0	62	40	19	8	31	1.82
69529306--69529371	28	2.3	29	76	5	80	36	15	13	34	1.87
69529294--69529352	16	3.4	16	74	17	55	38	13	11	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69529257--69529356	36	2.7	36	82	3	128	41	18	9	32	1.81
69529341--69529387	22	2.1	22	92	0	76	29	10	19	40	1.85
69529365--69529399	4	8.8	4	93	0	52	25	5	22	45	1.74
69537544--69537594	26	2.0	26	84	0	66	17	21	25	35	1.95
69541670--69541839	21	8.1	21	79	3	114	18	22	15	44	1.87
69541696--69541841	63	2.3	63	88	2	215	19	23	15	41	1.89
69541672--69541827	42	3.7	42	81	3	152	19	21	14	44	1.86
69542074--69542123	25	2.0	25	84	7	66	44	0	20	36	1.52
69558431--69558904	135	3.6	135	80	4	500	37	13	18	30	1.88
69558822--69559001	96	1.9	96	88	3	272	38	13	18	29	1.89
69561722--69561748	6	4.5	6	100	0	54	14	33	33	18	1.92
69565640--69565674	18	2.0	18	88	5	54	17	42	28	11	1.83
69565734--69565894	85	1.9	85	92	0	268	23	36	18	21	1.95
69571515--69571569	28	2.0	28	85	7	76	32	18	12	36	1.88
69574080--69574107	10	2.8	10	100	0	56	17	0	28	53	1.44
69596571--69596620	25	2.0	25	100	0	100	28	8	36	28	1.85
69597741--69597842	52	2.0	52	92	0	168	42	10	24	22	1.85
69603153--69603208	26	2.2	26	87	6	78	14	19	25	41	1.89
69611224--69611261	19	2.0	19	90	10	60	71	0	7	21	1.11
69620600--69620654	21	2.5	22	82	8	60	23	29	18	29	1.98
69621220--69624060	367	7.7	367	99	0	5592	38	19	9	32	1.84
69629618--69630186	284	2.0	284	100	0	1138	32	16	15	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69632995--69633037	19	2.3	19	84	4	52	30	6	9	53	1.59
69634516--69634645	41	3.2	41	88	1	190	37	20	18	23	1.94
69634598--69634703	50	2.1	51	89	1	160	41	23	17	16	1.90
69634638--69634662	10	2.5	10	100	0	50	48	36	16	0	1.46
69634557--69634739	91	2.0	91	81	8	212	36	21	20	21	1.95
69636597--69636648	19	2.7	20	84	6	79	28	38	0	32	1.57
69639675--69639936	130	2.0	131	90	3	420	33	16	20	28	1.95
69640352--69640394	21	2.0	21	95	0	77	25	20	53	0	1.46
69641834--69642011	27	6.6	27	84	3	205	29	28	15	26	1.96
69641855--69642010	82	1.9	81	88	3	233	29	28	15	26	1.96
69649968--69650145	27	6.6	27	81	3	178	29	28	15	26	1.96
69649989--69650144	82	1.9	81	85	3	215	29	28	15	26	1.96
69656357--69656527	40	4.3	40	84	0	216	34	21	18	26	1.96
69661220--69661261	7	6.0	7	100	0	84	28	14	0	57	1.38
69663137--69663182	18	2.6	18	100	0	92	69	26	0	4	1.07
69663471--69663509	17	2.3	17	86	8	53	17	10	0	71	1.12
69663561--69663613	13	4.0	13	79	11	54	71	3	0	24	1.02
69664414--69664471	25	2.3	23	80	13	62	34	6	6	51	1.55
69668988--69669012	13	1.9	13	100	0	50	16	4	16	64	1.44
69669956--69670080	49	2.5	49	85	1	160	27	20	28	24	1.99
69672018--69672067	21	2.5	19	72	27	50	50	0	2	48	1.12
69673620--69673665	13	3.5	13	88	8	58	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69673615--69673696	22	3.5	22	76	14	83	64	0	3	31	1.11
69673627--69673696	15	4.5	16	79	16	60	64	0	4	31	1.13
69673625--69673736	20	5.8	19	72	18	81	60	0	5	33	1.25
69677318--69677348	15	2.1	15	93	0	53	51	19	16	12	1.76
69677463--69677502	20	2.0	20	95	0	71	35	2	20	42	1.65
69679963--69679995	11	3.1	11	86	8	50	63	0	27	9	1.24
69681584--69681774	54	3.5	54	99	0	373	26	18	23	30	1.98
69681891--69682111	46	4.8	46	93	1	327	42	15	23	18	1.88
69683705--69683741	17	2.2	17	95	0	65	21	18	13	45	1.84
69684765--69684946	46	4.0	46	89	1	240	41	13	21	23	1.88
69692471--69693305	418	2.0	418	88	2	1232	38	12	9	38	1.76
69707862--69707933	19	3.7	20	83	5	94	56	5	0	37	1.22
69707863--69707947	39	2.1	41	86	6	120	54	4	0	41	1.21
69712633--69712684	15	3.6	15	80	12	56	44	0	1	53	1.11
69712761--69712802	15	2.7	16	82	14	52	45	0	2	52	1.13
69712752--69712793	15	2.9	15	82	10	52	47	0	0	52	1.00
69712575--69712799	119	1.9	120	98	0	434	41	2	6	49	1.41
69712737--69713049	154	2.0	155	95	2	567	46	5	3	44	1.41
69712902--69712936	18	2.0	17	88	5	52	45	0	0	54	0.99
69713169--69713207	16	2.4	16	86	0	51	28	33	2	35	1.71
69713182--69713238	16	3.6	16	95	0	87	33	36	0	29	1.58
69718536--69718604	24	2.9	24	87	8	104	37	5	7	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69732729--69732765	12	3.2	12	81	14	51	43	0	8	48	1.32
69734165--69734208	22	2.0	23	86	4	63	63	2	0	34	1.07
69734167--69734230	32	2.1	28	83	11	74	59	1	1	37	1.16
69734349--69734400	18	2.9	18	83	11	63	61	0	0	38	0.96
69739063--69739114	20	2.5	20	84	9	59	63	0	0	36	0.95
69739055--69739105	15	3.3	15	83	8	66	64	1	0	33	1.05
69739221--69739274	19	2.9	19	81	10	58	62	3	1	31	1.23
69741009--69741336	175	1.9	175	94	1	577	25	20	21	32	1.98
69741067--69741375	86	3.6	85	68	17	247	24	19	22	32	1.98
69744688--69744735	25	1.9	25	91	0	78	27	20	16	35	1.94
69748598--69748634	15	2.5	16	87	12	53	43	10	24	21	1.84
69751613--69751699	39	2.2	39	89	0	129	25	29	22	21	1.99
69758639--69758682	16	2.7	16	82	3	52	4	22	2	70	1.17
69761508--69761532	12	2.1	12	100	0	50	24	36	24	16	1.94
69761693--69761735	9	4.8	9	94	0	77	37	30	9	23	1.86
69762337--69762389	27	2.0	27	92	0	88	37	13	18	30	1.89
69762679--69762709	14	2.2	14	100	0	62	58	12	19	9	1.62
69763904--69763932	2	14.5	2	100	0	58	48	0	0	51	1.00
69764317--69764364	16	3.1	16	75	6	53	52	2	0	45	1.12
69764404--69764455	8	6.3	9	72	18	51	67	0	0	32	0.91
69764415--69764468	15	3.5	16	80	12	60	68	0	0	31	0.90
69765217--69765266	23	2.2	23	86	10	68	58	0	8	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69770090--69770260	61	2.8	61	79	5	193	30	0	28	40	1.57
69785049--69785100	20	2.7	19	82	14	70	32	0	1	65	1.04
69785049--69785100	19	2.7	18	80	14	59	32	0	1	65	1.04
69785049--69785102	10	5.5	10	77	20	60	33	0	1	64	1.04
69785238--69785294	16	3.9	15	74	17	57	66	5	0	28	1.13
69789219--69789248	15	2.0	15	93	0	51	56	0	13	30	1.37
69791689--69791838	67	2.2	67	81	8	171	32	17	28	21	1.96
69791713--69791896	67	2.8	64	77	8	194	29	17	29	22	1.97
69796745--69796803	27	2.2	27	93	0	100	37	23	20	18	1.94
69807489--69807557	24	2.8	24	80	12	70	62	0	2	34	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310