genome.fa.s13.2.7.7.80.10.50.1000.306.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  306  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100875472--100875600	20	6.5	19	81	5	114	13	31	19	35	1.90
100875474--100875600	60	2.1	60	82	2	157	13	32	18	35	1.90
100878890--100878940	21	2.4	21	93	0	84	33	13	27	25	1.94
100884275--100884420	37	3.9	37	92	1	213	26	30	18	24	1.98
100884276--100884420	74	2.0	74	91	0	236	26	30	18	24	1.98
100884628--100885012	47	8.1	47	90	3	563	26	30	11	30	1.92
100884628--100884990	147	2.5	143	88	4	559	26	30	11	30	1.92
100884651--100885012	194	1.9	194	95	0	661	26	30	11	30	1.92
100892073--100892132	15	4.1	14	78	6	57	56	16	11	15	1.67
100894012--100894218	53	3.8	53	77	3	207	38	17	23	20	1.93
100903902--100903955	27	2.0	27	100	0	108	51	18	3	25	1.62
100906623--100906728	20	5.3	20	69	13	65	19	33	17	29	1.95
100906693--100906777	20	4.3	19	72	8	62	11	32	18	36	1.88
100906693--100906777	40	2.1	40	82	8	102	11	32	18	36	1.88
100907557--100907619	10	6.3	10	83	10	60	7	1	15	74	1.12
100907593--100907619	5	5.4	5	100	0	54	0	0	18	81	0.69
100910845--100910977	66	2.0	66	86	2	187	26	12	24	37	1.90
100916018--100916053	12	2.9	12	91	4	54	55	0	19	25	1.43
100921967--100922047	41	2.0	41	97	0	153	43	29	11	16	1.82
100922545--100922767	40	5.6	40	82	10	237	25	27	21	25	2.00
100922545--100922768	79	2.8	80	86	7	289	25	27	21	25	2.00
100929598--100929637	19	2.1	19	100	0	80	25	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100957057--100957230	86	2.0	90	80	6	205	27	28	20	24	1.99
100957100--100957230	45	3.0	44	88	4	192	26	29	21	22	1.99
100960084--100960146	31	2.0	31	93	0	108	36	19	11	33	1.87
100960919--100961045	59	2.2	59	94	2	222	36	17	15	30	1.91
100976554--100976623	35	2.0	35	91	0	113	28	21	27	22	1.99
100979700--100979877	27	6.6	27	84	3	205	29	28	15	26	1.96
100979721--100979876	82	1.9	81	88	3	233	29	28	15	26	1.96
100986576--100986631	25	2.2	25	96	0	103	21	3	28	46	1.68
100992231--100993207	27	36.2	27	84	0	1004	37	18	18	24	1.93
100992233--100993203	81	12.0	81	98	0	1802	37	18	18	25	1.93
100993489--100993539	21	2.4	21	86	0	66	35	11	21	31	1.90
100993489--100993553	11	6.1	11	71	5	53	35	13	18	32	1.90
100993585--100993654	25	2.8	25	95	0	122	25	25	22	25	2.00
100993584--100993667	25	3.4	24	85	8	107	28	22	22	26	1.99
100993585--100993679	50	1.9	50	82	8	122	28	24	22	25	1.99
100993921--100994007	6	14.3	6	74	11	79	19	17	12	50	1.77
100999574--100999660	34	2.6	34	85	3	104	25	22	25	26	2.00
101007404--101007470	34	2.0	34	91	5	109	26	23	22	26	2.00
101016130--101016218	44	2.0	44	97	0	169	26	16	10	46	1.79
101019069--101019191	47	2.6	47	83	2	140	31	9	32	26	1.89
101019145--101019413	134	2.0	134	100	0	538	28	18	26	26	1.98
101019448--101019526	37	2.1	37	90	0	122	24	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101022975--101023022	19	2.6	19	90	3	80	37	2	12	47	1.53
101023046--101023124	41	1.9	41	97	0	149	30	7	16	45	1.75
101030761--101030930	35	4.9	35	81	4	184	37	15	22	23	1.93
101031509--101031602	19	5.2	19	76	15	83	38	8	15	37	1.79
101031559--101031583	5	5.0	5	100	0	50	40	0	20	40	1.52
101039065--101039528	44	10.6	44	72	10	240	31	17	24	26	1.97
101039073--101039515	132	3.4	132	91	0	683	31	17	24	26	1.97
101039459--101039551	44	2.1	44	92	4	152	34	16	24	24	1.95
101039538--101040252	205	3.5	205	92	0	1173	30	18	22	28	1.97
101040346--101040431	45	1.9	45	90	0	136	30	16	26	26	1.97
101040793--101040869	19	4.2	19	80	16	99	37	7	18	36	1.80
101040826--101040851	5	5.2	5	100	0	52	38	0	23	38	1.55
101041831--101041880	25	2.0	25	100	0	100	40	16	16	28	1.89
101044364--101044418	21	2.5	23	82	11	71	63	0	3	32	1.12
101044378--101044416	12	3.4	11	89	10	60	64	0	2	33	1.08
101044381--101044428	15	3.2	16	72	25	50	64	0	2	33	1.05
101044355--101044430	23	3.7	20	73	17	59	63	0	2	34	1.09
101044455--101044510	25	2.3	24	79	11	62	60	1	1	35	1.17
101049357--101049547	30	6.3	29	76	10	168	26	28	10	35	1.89
101049357--101049547	60	3.2	58	78	8	195	26	28	10	35	1.89
101049353--101049521	60	2.8	61	81	3	207	27	28	9	34	1.88
101049248--101049548	61	5.1	61	69	11	194	24	27	10	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101049899--101049962	31	2.1	31	100	0	128	29	39	9	21	1.85
101054674--101054976	83	3.6	84	83	5	398	48	10	8	32	1.69
101054948--101055177	88	2.6	87	80	6	232	40	11	12	35	1.80
101055230--101055395	87	1.9	87	86	4	237	43	10	13	31	1.78
101058211--101058271	30	2.0	30	93	0	104	19	47	1	31	1.59
101059611--101059706	31	3.1	31	92	0	147	51	22	2	23	1.59
101059621--101059674	18	3.3	18	67	32	57	57	20	0	22	1.41
101068963--101069015	26	2.0	27	88	7	81	35	1	3	58	1.27
101068965--101069021	28	2.2	27	81	12	66	36	1	5	56	1.32
101076681--101076864	50	3.7	50	83	1	217	29	26	18	25	1.98
101076681--101076864	101	1.8	99	85	2	260	29	26	18	25	1.98
101077110--101077163	27	2.0	27	88	0	81	38	12	7	40	1.72
101079744--101079821	26	3.0	26	98	0	147	32	7	25	34	1.84
101082624--101082648	13	1.9	13	100	0	50	52	0	0	48	1.00
101083520--101083562	21	2.1	21	86	4	61	18	16	32	32	1.93
101085073--101085106	13	2.6	13	90	0	50	35	8	17	38	1.81
101086194--101086355	42	3.8	42	80	6	166	31	13	24	30	1.94
101093171--101093208	19	2.1	19	90	5	60	44	26	5	23	1.74
101100866--101101017	67	2.3	66	81	5	175	28	17	32	21	1.96
101105263--101105402	42	3.2	44	80	5	142	28	25	20	25	1.99
101111027--101111168	71	2.0	71	100	0	284	28	11	21	39	1.87
101111253--101111914	47	14.1	47	96	0	1191	31	9	30	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101112033--101112111	37	2.1	37	88	4	115	25	18	30	25	1.98
101123671--101123818	73	2.0	73	100	0	296	35	17	9	37	1.82
101128116--101128201	43	2.0	43	97	0	163	26	20	12	39	1.89
101136227--101136525	39	7.6	39	98	0	562	22	22	28	26	1.99
101144409--101144593	40	4.7	39	86	4	237	23	23	28	24	1.99
101144410--101144616	40	5.2	40	85	6	235	23	23	28	24	2.00
101144406--101144616	79	2.7	80	82	5	286	24	22	27	24	2.00
101151243--101151281	20	2.0	20	89	0	60	76	2	5	15	1.06
101159013--101159074	28	2.2	28	97	0	115	35	16	25	22	1.94
101159917--101160029	42	2.7	42	95	0	208	24	20	23	31	1.98
101162153--101162191	17	2.3	17	95	0	69	58	12	5	23	1.54
101173854--101173909	25	2.2	25	84	6	69	66	14	7	12	1.44
101174170--101174229	21	2.9	21	89	0	84	28	33	15	23	1.94
101175733--101175830	44	2.4	38	77	19	115	30	23	21	24	1.99
101175744--101175838	44	2.1	45	94	1	165	33	21	18	26	1.96
101179786--101179961	46	3.8	45	75	10	176	20	19	30	30	1.97
101179782--101179954	93	1.9	93	91	0	283	20	19	30	28	1.97
101182259--101182449	40	4.8	40	90	2	278	24	21	27	27	1.99
101183937--101184141	27	7.6	27	87	3	250	31	27	13	26	1.94
101198836--101199013	27	6.5	27	81	7	207	25	16	30	26	1.96
101198836--101199013	55	3.3	55	88	2	252	25	16	30	26	1.96
101199926--101200119	96	2.0	96	98	0	379	32	18	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101200940--101201162	112	2.0	112	97	0	419	32	23	21	23	1.98
101201427--101201837	44	9.3	44	78	6	266	25	23	18	32	1.97
101201430--101201683	132	1.9	132	92	1	429	25	22	18	32	1.97
101201443--101201721	132	2.1	132	87	2	382	26	23	17	32	1.97
101201888--101202075	68	2.8	68	89	1	279	25	21	23	29	1.99
101202155--101202489	43	7.7	43	73	14	265	22	19	22	35	1.96
101202155--101202434	88	3.2	87	75	6	287	22	19	22	35	1.96
101202194--101202495	132	2.3	132	95	0	541	20	20	22	36	1.96
101202102--101202434	175	1.9	174	86	2	479	21	20	21	35	1.96
101202622--101203005	97	4.0	97	97	0	709	29	21	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310