genome.fa.s13.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  159  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52141605--52141712	6	17.7	6	70	5	74	7	18	2	71	1.22
52155461--52155503	14	3.1	14	86	0	59	13	30	6	48	1.69
52155870--52155908	11	3.5	11	78	0	51	84	2	2	10	0.81
52161121--52161160	19	2.1	19	85	0	53	25	35	17	22	1.95
52162396--52162443	14	3.4	14	85	0	60	18	31	6	43	1.75
52162736--52162789	20	2.7	20	82	0	63	24	20	18	37	1.94
52162736--52162809	30	2.5	30	86	8	98	21	20	18	39	1.93
52162736--52162800	20	3.2	20	71	16	53	23	21	16	38	1.93
52164767--52164836	25	2.7	26	80	12	83	44	18	20	17	1.87
52164824--52164867	20	2.2	20	91	0	70	40	22	22	13	1.89
52170967--52171298	38	8.0	39	72	16	251	28	15	25	31	1.95
52170937--52171291	85	4.2	85	99	0	692	28	15	24	31	1.95
52171534--52171558	13	1.9	13	100	0	50	16	0	16	68	1.22
52175431--52175491	31	2.0	31	90	0	95	36	8	19	36	1.82
52179693--52179717	13	1.9	13	100	0	50	16	0	16	68	1.22
52185430--52185526	30	3.2	30	70	8	81	28	15	27	27	1.96
52187720--52187774	20	2.8	20	88	0	83	29	16	29	25	1.97
52190531--52190594	28	2.3	28	91	5	103	51	10	6	31	1.62
52191619--52191715	30	3.2	30	71	8	90	27	15	28	27	1.96
52195718--52195843	46	2.7	46	88	0	180	30	26	20	21	1.98
52197906--52198041	46	2.9	49	80	13	176	29	25	19	25	1.99
52197863--52198038	46	3.8	46	77	10	169	30	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52197871--52198057	46	4.0	46	76	14	163	29	26	19	24	1.98
52200429--52200478	15	3.4	15	86	2	66	60	12	18	10	1.59
52200440--52200487	15	3.2	15	79	5	53	56	14	16	12	1.68
52203417--52203592	46	3.8	46	78	10	196	28	27	21	22	1.99
52203424--52203595	93	1.8	93	92	0	290	27	27	21	22	1.99
52204544--52206027	579	2.6	579	95	1	2597	36	18	11	33	1.87
52209746--52209847	51	2.0	51	92	0	168	28	25	13	32	1.94
52212187--52212357	46	3.7	45	75	10	175	29	28	19	22	1.98
52212192--52212362	93	1.8	93	91	2	281	29	28	19	22	1.98
52212189--52212378	46	4.1	46	68	20	119	29	28	19	22	1.98
52214650--52214711	27	2.3	27	82	0	79	45	19	16	19	1.86
52214856--52214948	27	3.4	27	75	0	87	22	22	20	34	1.97
52215877--52216025	42	3.5	42	75	3	147	28	17	25	28	1.97
52215875--52216037	84	2.0	83	81	1	191	28	17	25	28	1.98
52223402--52223521	12	10.0	12	72	19	81	70	2	18	9	1.26
52223416--52223523	6	17.7	6	70	6	74	71	2	18	7	1.22
52223420--52223523	18	5.6	18	75	5	82	71	2	18	7	1.23
52223484--52223521	13	2.8	13	82	17	51	73	0	18	7	1.06
52223485--52223535	21	2.4	21	74	6	50	74	1	17	5	1.11
52223538--52223600	33	1.9	33	84	12	85	55	6	25	12	1.60
52227655--52228090	216	2.0	216	98	0	836	23	25	13	37	1.91
52231855--52231889	16	2.2	16	89	0	52	54	22	14	8	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52237324--52237498	46	3.8	45	78	7	190	28	30	20	20	1.98
52237331--52237503	93	1.9	93	93	0	301	27	30	20	20	1.98
52239894--52239969	30	2.5	30	81	10	84	55	15	15	13	1.70
52239896--52239973	15	5.2	15	74	9	61	55	15	15	14	1.70
52240828--52241425	40	14.9	40	91	1	917	24	22	29	24	1.99
52245613--52245752	70	2.0	70	98	0	271	32	30	19	17	1.94
52245722--52245897	46	3.8	46	76	4	192	30	29	19	21	1.97
52245729--52245901	93	1.9	93	92	0	292	28	30	19	21	1.98
52252922--52253107	40	4.7	40	85	5	216	26	27	21	23	1.99
52254100--52254497	198	2.0	199	98	1	771	29	26	12	31	1.93
52256752--52256838	43	2.0	43	86	0	120	22	13	33	29	1.93
52258332--52258403	23	3.4	23	63	21	66	20	34	29	15	1.93
52258327--52258406	40	2.0	40	100	0	160	25	32	27	15	1.95
52261230--52261467	39	6.1	39	90	3	320	30	30	21	17	1.96
52261247--52261467	78	2.8	78	91	2	354	29	29	22	18	1.97
52261257--52261467	117	1.8	117	92	2	361	30	30	21	17	1.96
52261542--52261623	28	2.9	28	83	0	101	29	24	10	35	1.90
52262873--52262953	29	2.8	29	88	0	117	28	25	18	27	1.98
52265872--52265979	29	3.8	29	81	6	121	30	28	13	26	1.94
52265869--52265979	58	1.9	57	90	1	177	30	29	13	26	1.94
52266202--52266252	8	6.5	8	77	2	50	7	15	21	54	1.66
52266207--52266248	16	2.6	16	92	0	66	9	19	23	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52280985--52281038	25	2.2	25	96	0	99	7	25	14	51	1.68
52283955--52283994	20	2.0	20	85	0	53	65	0	30	5	1.14
52284052--52284106	28	2.0	27	82	10	67	50	3	41	3	1.37
52285383--52285422	18	2.1	18	86	9	53	35	15	10	40	1.80
52286120--52286172	13	4.1	13	75	0	52	39	16	5	37	1.73
52286500--52286582	33	2.5	33	80	1	96	48	12	13	26	1.77
52287663--52287720	29	2.0	29	96	0	107	60	10	15	13	1.59
52289586--52289697	27	4.2	25	75	12	89	37	22	22	17	1.94
52289586--52289697	54	2.1	54	81	6	129	37	22	22	17	1.94
52291125--52291183	24	2.5	24	94	0	100	28	37	1	32	1.67
52297435--52297546	27	4.2	26	83	7	134	38	22	23	16	1.93
52297435--52297546	54	2.1	54	88	3	163	38	22	23	16	1.93
52298954--52299024	24	3.0	24	91	0	115	25	39	1	33	1.65
52300443--52300538	40	2.5	37	80	8	111	34	36	12	16	1.87
52306644--52306685	22	1.9	22	85	9	59	4	35	0	59	1.19
52307061--52307109	23	2.1	23	96	0	89	34	12	24	28	1.91
52307577--52307633	25	2.2	26	87	6	89	43	26	12	17	1.84
52321661--52321692	14	2.4	14	90	10	50	21	9	28	40	1.84
52321658--52321959	151	2.0	152	88	2	446	26	18	25	29	1.98
52321714--52321951	50	4.7	50	77	9	241	26	19	25	28	1.99
52338072--52338349	48	5.7	48	75	5	193	26	18	29	24	1.98
52338117--52338346	98	2.4	95	79	7	248	27	18	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52340325--52340370	24	2.0	23	86	4	65	32	13	8	45	1.73
52342639--52342733	43	2.2	43	83	3	111	34	24	13	27	1.93
52346418--52346561	40	3.6	40	92	0	216	22	23	29	25	1.99
52346377--52346584	40	5.2	39	84	5	206	22	23	28	25	1.99
52346373--52346584	80	2.7	80	79	6	261	23	22	28	25	1.99
52354429--52354678	40	6.3	40	92	1	324	26	28	21	24	1.99
52354429--52354731	80	3.8	79	84	3	349	26	28	21	24	1.99
52354427--52354731	120	2.5	119	82	4	337	26	28	20	24	1.99
52354663--52354740	40	1.9	41	82	10	97	26	28	20	24	1.99
52360566--52360643	29	2.7	29	93	0	129	21	17	26	33	1.96
52366782--52366968	93	2.0	93	89	4	288	34	18	26	20	1.96
52381745--52381847	28	3.7	28	88	0	152	27	32	14	26	1.95
52385740--52385911	23	7.4	23	78	4	177	27	22	16	32	1.96
52385740--52385910	46	3.7	45	85	6	209	28	22	16	32	1.96
52388086--52388167	41	2.0	41	95	0	146	28	19	29	23	1.98
52388330--52388369	21	2.0	21	85	5	55	30	27	32	10	1.89
52391623--52391712	45	2.0	45	95	0	162	32	17	24	25	1.97
52396276--52396303	13	2.2	13	100	0	56	28	0	14	57	1.38
52397068--52397110	12	3.4	12	75	12	50	41	4	4	48	1.44
52397742--52397907	40	4.2	40	89	6	257	24	21	25	28	1.99
52397726--52397907	80	2.3	80	92	2	305	26	21	24	27	1.99
52414056--52414113	23	2.5	23	91	0	98	41	17	20	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52414726--52414760	18	1.9	18	94	0	61	11	34	28	25	1.91
52422484--52422546	33	1.9	33	90	0	99	26	25	20	26	1.99
52430148--52430410	40	6.6	40	88	3	325	24	20	27	26	1.99
52430187--52430445	80	3.3	80	85	3	256	25	20	27	25	1.99
52438100--52438322	40	5.6	40	86	3	236	24	21	27	26	1.99
52438175--52438357	79	2.3	80	82	1	226	25	20	27	25	1.99
52442897--52442963	20	3.3	20	89	0	107	32	11	22	32	1.90
52443013--52443089	23	3.2	24	90	5	120	29	18	20	31	1.96
52443298--52443360	31	2.0	31	87	0	90	38	14	22	25	1.92
52443652--52443731	37	2.2	37	100	0	160	35	27	7	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310