Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  210  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68846991--68847054
23
2.8
23
80
0
74
32
15
26
25
1.95
68849484--68849653
63
2.7
63
86
0
241
25
25
23
25
2.00
68853037--68853072
16
2.2
16
100
0
72
72
11
0
16
1.12
68855640--68855739
37
2.7
37
75
7
94
36
19
14
31
1.91
68866390--68866414
13
1.9
13
100
0
50
24
4
0
72
1.02
68868059--68868108
24
2.1
24
88
0
73
34
10
22
34
1.87
68876628--68876669
16
2.5
17
92
3
68
57
2
2
38
1.25
68877689--68877766
34
2.2
34
84
4
93
23
20
26
29
1.99
68877705--68877774
34
2.1
34
94
0
122
20
21
25
32
1.97
68877758--68877937
35
5.1
35
59
15
84
24
21
22
32
1.98
68877740--68878001
70
3.7
70
98
0
497
25
20
20
33
1.97
68877793--68877972
35
5.1
35
59
15
84
25
18
22
32
1.97
68883535--68883637
46
2.2
48
85
3
138
34
13
24
27
1.93
68898812--68898892
1
81.0
1
81
0
63
6
2
4
86
0.78
68898816--68898891
30
2.5
31
85
6
102
6
2
5
85
0.81
68898809--68898889
16
5.0
16
77
14
94
7
2
6
83
0.87
68898814--68898892
31
2.6
29
82
13
95
6
2
5
86
0.79
68900290--68900321
16
2.0
16
100
0
64
31
18
6
43
1.75
68907106--68907132
6
4.5
6
100
0
54
48
14
18
18
1.82
68909970--68909999
15
2.0
15
93
0
51
56
0
0
43
0.99
68911485--68911540
25
2.2
25
81
12
71
42
0
10
46
1.38
68920877--68920948
37
1.9
37
100
0
144
19
23
13
43
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68921203--68921273
26
2.8
26
95
2
126
52
0
33
14
1.42
68922314--68922446
45
2.9
46
84
2
169
45
15
18
20
1.85
68922523--68922610
27
3.3
27
75
0
95
38
13
25
22
1.91
68930584--68930608
5
5.0
5
100
0
50
20
0
20
60
1.37
68931519--68931557
15
2.7
15
88
4
53
33
2
2
61
1.23
68931740--68931779
21
1.9
21
85
10
55
12
15
0
72
1.12
68936842--68936883
20
2.1
20
86
0
57
47
0
7
45
1.30
68939091--68939134
13
3.0
15
84
15
65
59
0
0
40
0.98
68939094--68939128
8
4.4
8
92
0
61
60
0
0
40
0.97
68939195--68939227
14
2.4
14
90
5
50
75
0
24
0
0.80
68939422--68939456
6
5.8
6
96
0
61
34
0
28
37
1.58
68943242--68943336
44
2.2
42
81
10
104
36
22
18
22
1.95
68947422--68947579
78
2.0
78
92
0
262
39
21
10
28
1.86
68950230--68950357
44
3.0
41
72
13
123
35
25
17
21
1.95
68953318--68954643
663
2.0
663
90
0
2064
32
15
19
32
1.94
68955570--68955613
13
3.1
14
84
15
63
61
2
0
36
1.09
68955572--68955606
8
4.4
8
85
0
52
60
2
0
37
1.12
68955570--68955628
29
2.0
29
81
12
68
64
3
1
30
1.20
68958197--68958225
15
1.9
15
100
0
58
48
0
6
44
1.29
68966126--68966277
59
2.5
59
84
11
193
52
1
0
45
1.12
68966239--68966280
15
2.7
16
85
3
50
52
0
0
47
1.00
68968047--68968085
19
2.0
20
90
5
62
69
2
0
28
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68975297--68975346
22
2.2
22
86
10
66
58
2
0
40
1.10
68977836--68977895
27
2.3
26
80
11
70
65
3
0
31
1.09
68977844--68977894
26
1.9
27
88
4
77
62
3
0
33
1.13
68977863--68977892
15
1.9
16
93
6
53
70
0
0
30
0.88
68977846--68977901
25
2.1
27
80
6
62
67
3
1
26
1.16
68979999--68980051
6
8.5
6
87
8
79
79
3
0
16
0.88
68980071--68980120
9
5.6
9
85
0
55
26
8
22
44
1.80
68980071--68980121
18
2.8
18
81
0
66
25
7
21
45
1.79
68990323--68990354
3
10.7
3
93
0
55
31
0
3
65
1.08
68991674--68991734
24
2.5
24
94
0
104
50
3
26
19
1.63
68993285--68993365
42
1.9
42
84
0
108
28
28
20
22
1.99
68994363--68994525
80
2.0
80
98
0
317
17
9
17
55
1.68
68997192--68997399
104
2.0
104
98
0
398
25
22
27
25
2.00
68998282--68998315
17
1.9
17
88
5
50
52
2
29
14
1.56
68998786--68998844
30
2.0
30
93
0
100
47
20
13
18
1.82
68998798--68998875
31
2.5
31
84
8
97
51
17
12
17
1.76
69001519--69001548
13
2.2
14
94
5
53
80
0
0
20
0.72
69001766--69002062
3
98.3
3
79
13
308
64
1
2
31
1.16
69002206--69002250
16
2.8
16
83
6
56
66
0
6
26
1.16
69003693--69003945
45
5.6
44
79
10
267
26
24
20
29
1.99
69003693--69003950
140
1.8
139
90
2
419
26
24
20
28
1.99
69004090--69004567
45
10.8
45
68
15
262
25
27
18
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69003915--69004569
133
5.0
133
88
0
960
25
27
18
28
1.98
69011283--69011327
17
2.6
17
89
0
63
77
2
6
13
1.05
69011379--69011433
24
2.3
25
79
20
64
60
1
3
34
1.25
69011538--69011869
3
110.3
3
80
10
349
63
1
3
31
1.19
69011976--69012049
3
25.3
3
76
13
57
62
1
6
29
1.29
69017506--69017536
12
2.5
12
94
5
53
48
0
16
35
1.46
69019693--69019726
14
2.4
14
95
5
59
73
0
0
26
0.83
69020289--69020346
24
2.3
25
85
5
73
41
1
22
34
1.64
69022214--69022259
20
2.3
20
92
0
74
47
8
23
19
1.77
69028626--69028671
24
2.0
23
91
4
74
50
6
4
39
1.48
69028639--69028701
33
1.9
33
83
6
83
47
6
3
42
1.44
69029285--69029345
16
3.8
16
79
10
61
55
0
3
40
1.16
69037245--69037298
26
2.1
26
89
0
81
38
7
5
48
1.55
69048539--69048564
13
2.0
13
100
0
52
15
0
0
84
0.62
69055293--69055317
12
2.1
12
100
0
50
16
0
0
84
0.63
69056053--69056107
22
2.4
23
82
11
69
40
5
10
43
1.63
69058914--69059229
153
2.0
157
84
6
410
41
4
8
45
1.54
69059736--69059785
20
2.5
20
78
15
57
52
10
10
28
1.67
69066017--69066084
33
2.1
33
97
0
127
30
10
13
45
1.76
69066476--69066561
27
3.2
27
73
3
84
12
9
40
37
1.76
69068689--69068723
18
2.0
17
88
5
52
54
0
0
45
0.99
69072258--69072285
11
2.5
11
100
0
56
42
10
39
7
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69072556--69072593
17
2.2
17
100
0
76
26
15
28
28
1.96
69075203--69075786
134
4.4
134
83
1
679
31
16
13
37
1.89
69075196--69075770
268
2.1
268
86
1
778
31
16
14
37
1.88
69075739--69075822
36
2.3
36
85
4
107
30
16
17
34
1.93
69082601--69082643
22
2.0
22
81
9
52
58
9
11
20
1.61
69083395--69083492
43
2.2
44
80
1
117
25
17
24
32
1.97
69083765--69083806
21
2.0
21
95
0
75
0
28
21
50
1.49
69084931--69084957
11
2.5
11
100
0
54
37
14
0
48
1.45
69086540--69086606
32
2.1
32
83
5
82
38
25
10
25
1.87
69087198--69087544
170
2.0
171
96
0
633
28
18
20
32
1.96
69097739--69097869
35
3.6
37
73
14
128
32
22
12
33
1.91
69100164--69100189
5
5.2
5
100
0
52
42
19
19
19
1.90
69100279--69100304
5
5.2
5
100
0
52
38
19
19
23
1.93
69100253--69100304
26
2.0
26
81
7
61
34
15
26
23
1.94
69100823--69100856
16
2.1
16
88
5
50
47
0
23
29
1.52
69101208--69101244
9
4.1
9
89
0
56
29
8
13
48
1.71
69106428--69106564
35
3.7
39
75
12
130
32
22
12
32
1.91
69111794--69111881
30
2.9
30
86
6
108
19
25
30
25
1.98
69122067--69122125
23
2.6
23
83
5
75
15
15
27
42
1.86
69125523--69125554
14
2.3
14
94
0
55
40
25
9
25
1.85
69139307--69139349
16
2.6
16
77
3
50
60
2
2
34
1.22
69144575--69144821
38
6.0
38
76
15
242
30
25
14
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69144620--69144911
47
6.6
47
76
14
314
31
23
14
30
1.94
69144582--69144873
85
3.4
85
96
0
530
30
24
14
29
1.95
69144798--69144911
48
2.4
47
80
4
140
32
23
12
31
1.92
69147630--69147671
15
2.8
15
88
0
66
52
14
16
16
1.75
69148633--69148672
21
1.9
21
100
0
80
20
20
10
50
1.76
69152329--69152392
24
2.6
24
80
14
69
34
4
4
56
1.41
69152792--69152907
36
3.1
36
72
18
121
29
12
6
50
1.66
69152815--69152932
38
3.2
38
72
18
138
28
12
4
54
1.57
69152792--69152939
74
2.0
74
100
0
296
29
13
5
51
1.63
69153647--69153770
38
3.0
38
69
20
104
30
25
14
29
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310