genome.fa.s13.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  195  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63689224--63689494	94	2.8	94	81	7	303	25	16	27	30	1.96
63692692--63692760	15	4.6	15	80	7	86	11	20	13	55	1.68
63692683--63692762	30	2.6	31	84	3	101	11	20	15	53	1.71
63694087--63694391	149	2.0	150	91	3	490	36	6	21	35	1.80
63695315--63695676	46	7.8	46	76	15	352	22	19	29	28	1.98
63695311--63695668	93	3.8	93	97	0	662	22	20	29	27	1.98
63697469--63697689	92	2.4	92	90	0	343	19	24	14	41	1.89
63697469--63697696	46	5.0	46	89	3	298	20	24	14	40	1.90
63706054--63706122	35	2.0	35	97	0	129	39	10	15	34	1.82
63709183--63709218	14	2.6	14	86	0	54	16	2	2	77	1.00
63732092--63732244	77	2.0	77	97	0	288	32	21	13	32	1.92
63735905--63735939	18	1.9	18	88	0	52	60	0	0	40	0.97
63738025--63738075	18	2.8	18	90	0	75	29	25	13	31	1.94
63742129--63742159	11	2.8	11	95	0	53	19	48	3	29	1.64
63743216--63743252	3	12.3	3	88	0	56	5	0	62	32	1.18
63746444--63746486	13	3.0	15	83	13	63	48	2	27	20	1.62
63748195--63748243	25	2.0	25	91	0	80	38	4	18	38	1.70
63748196--63748243	12	3.9	12	75	5	51	39	4	18	37	1.70
63752863--63752913	12	4.1	13	76	16	54	41	3	17	37	1.68
63752865--63752913	25	2.0	25	91	0	80	38	4	18	38	1.70
63755913--63756074	80	2.0	80	98	0	315	39	7	24	29	1.82
63756344--63756373	14	2.1	15	93	6	53	53	3	6	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63767344--63767390	25	1.9	24	91	4	76	21	10	14	53	1.71
63777493--63777579	44	2.0	44	84	6	113	39	9	5	45	1.60
63779866--63779895	10	3.0	10	95	0	51	26	0	13	60	1.34
63781176--63781250	32	2.4	32	79	2	80	29	20	20	30	1.97
63781328--63781368	19	2.3	19	88	12	61	31	2	0	65	1.05
63783762--63783791	14	2.1	14	100	0	60	66	0	0	33	0.92
63783783--63783814	11	2.9	11	100	0	64	65	0	0	34	0.93
63783766--63783822	11	4.9	11	86	6	60	64	0	1	33	1.04
63785885--63785918	17	2.0	17	100	0	68	29	5	29	35	1.81
63797481--63797523	20	2.1	21	83	12	54	65	6	0	27	1.18
63800026--63800084	28	2.2	25	82	14	66	38	5	5	50	1.46
63804538--63804813	39	7.1	39	98	0	525	20	25	30	23	1.98
63808564--63808613	20	2.5	21	78	15	52	4	16	4	76	1.10
63816425--63816534	30	3.8	28	71	13	73	30	10	14	44	1.78
63829793--63829825	10	3.4	10	83	8	50	51	0	3	45	1.16
63830019--63830088	23	3.0	23	82	2	86	44	18	8	28	1.79
63830277--63830318	18	2.3	19	88	12	61	33	0	0	66	0.92
63830842--63830895	27	2.0	28	85	10	76	37	3	7	51	1.48
63831907--63831947	21	2.0	21	100	0	82	26	0	4	68	1.10
63833938--63833991	20	2.7	20	85	0	72	11	35	35	18	1.86
63841600--63841873	138	2.0	138	91	0	440	33	20	17	28	1.96
63841630--63841903	138	2.0	137	80	4	304	36	20	18	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63853621--63853707	44	2.0	44	100	0	174	34	16	16	33	1.91
63861396--63861433	18	2.1	18	85	9	51	18	36	5	39	1.73
63861896--63861953	29	2.0	29	100	0	116	44	17	20	17	1.86
63869713--63870137	212	2.0	212	97	0	805	27	17	22	32	1.96
63881823--63881880	25	2.4	23	77	8	62	44	1	5	48	1.35
63883228--63883281	28	1.9	28	96	0	99	29	11	20	38	1.87
63885624--63885651	1	28.0	1	100	0	56	0	0	0	100	0.00
63893475--63893635	51	3.1	51	82	9	182	29	16	12	41	1.85
63893475--63893643	54	3.2	53	82	9	193	28	17	12	41	1.85
63910731--63910785	22	2.5	22	85	5	67	36	5	3	54	1.41
63911101--63911139	16	2.5	15	84	12	51	48	0	0	51	1.00
63912009--63912054	23	2.0	24	91	4	76	52	19	0	28	1.47
63913686--63913727	22	1.9	22	85	0	57	52	0	0	47	1.00
63913751--63913787	16	2.3	16	86	13	58	59	0	0	40	0.97
63914335--63914375	14	3.0	13	85	7	55	34	17	9	39	1.82
63915599--63915630	12	2.5	13	95	5	57	21	0	0	78	0.76
63919758--63919798	18	2.2	19	83	12	50	26	4	4	63	1.35
63928757--63928864	54	2.0	54	90	3	173	16	12	52	18	1.74
63929293--63929683	195	2.0	195	95	0	710	20	22	26	29	1.98
63932887--63932924	12	3.5	11	82	10	51	89	0	10	0	0.49
63934428--63934475	19	2.6	19	86	3	71	37	4	12	45	1.61
63934499--63934582	42	2.0	42	95	0	150	29	8	14	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63936887--63936996	54	2.0	54	98	0	211	40	2	12	43	1.57
63936903--63936996	19	5.2	18	71	13	77	40	3	13	42	1.61
63936957--63937004	19	2.6	19	83	3	62	37	2	14	45	1.57
63955200--63955334	52	2.6	51	85	5	171	27	16	25	31	1.96
63962774--63962877	53	2.0	52	83	9	131	24	13	27	34	1.93
63963838--63963958	43	2.9	42	86	2	170	23	21	33	22	1.98
63963850--63964038	43	4.6	41	78	5	132	24	20	30	24	1.99
63964521--63964553	16	1.9	18	88	11	52	18	12	18	51	1.76
63968387--63968527	60	2.4	59	82	9	171	26	19	26	27	1.99
63974584--63974704	43	2.9	42	80	2	143	23	20	33	21	1.97
63975267--63975299	16	1.9	18	88	11	52	18	12	18	51	1.76
63976000--63976040	22	1.9	21	85	14	57	48	12	0	39	1.41
63979456--63979530	11	6.8	11	82	0	69	4	9	30	56	1.50
63981736--63981785	18	2.7	18	81	3	64	44	8	10	38	1.68
63985567--63985611	21	2.1	21	91	0	72	40	31	11	17	1.85
63995847--63995972	60	2.1	61	81	10	143	41	15	15	27	1.87
63996431--63996493	30	2.1	30	91	5	101	25	4	11	58	1.51
63998476--63998631	77	2.0	77	97	1	296	37	14	11	36	1.82
63998744--63998829	43	2.0	43	97	0	163	48	23	17	10	1.77
64004514--64004542	3	9.7	3	100	0	58	68	0	0	31	0.89
64006421--64006446	3	8.7	3	100	0	52	30	0	0	69	0.89
64010255--64010284	14	2.1	14	93	0	51	63	0	13	23	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64017267--64018352	46	23.6	46	95	0	1843	39	14	23	21	1.91
64024656--64024686	11	2.8	11	95	0	53	19	48	3	29	1.64
64025231--64025323	18	5.2	18	89	2	125	29	22	16	32	1.95
64025231--64025323	36	2.6	36	92	0	150	29	22	16	32	1.95
64029377--64029407	11	2.8	11	95	0	53	19	48	3	29	1.64
64030010--64030102	18	5.2	18	89	2	125	29	22	16	32	1.95
64030010--64030102	36	2.6	36	92	0	150	29	22	16	32	1.95
64033183--64033216	8	4.2	8	100	0	68	50	0	23	26	1.50
64034936--64035370	144	3.0	144	78	7	522	33	16	20	29	1.95
64036289--64036511	111	2.0	111	94	0	392	30	12	11	45	1.78
64046124--64046198	37	2.0	37	100	0	150	34	13	28	24	1.93
64075860--64075906	19	2.5	19	72	3	51	36	10	2	51	1.49
64076579--64076644	13	5.1	13	77	3	71	37	22	7	31	1.82
64076579--64076644	26	2.5	26	82	4	89	37	22	7	31	1.82
64077340--64077389	26	2.0	25	84	4	64	42	8	2	48	1.44
64082813--64082876	26	2.4	28	82	12	80	54	4	20	20	1.62
64084480--64084663	67	2.9	63	78	7	199	30	17	29	22	1.97
64085852--64085934	28	3.0	27	84	7	103	56	3	14	25	1.54
64094087--64094119	16	2.1	16	94	0	57	33	27	0	39	1.57
64095644--64095756	48	2.4	48	89	4	167	24	15	26	33	1.95
64100325--64100497	46	3.7	46	78	13	178	27	20	28	23	1.99
64100328--64100596	46	5.8	45	72	12	147	27	19	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64105734--64105777	15	2.9	15	89	0	70	56	13	13	15	1.67
64116790--64117168	132	2.9	134	82	2	435	23	23	16	36	1.94
64116790--64117221	67	6.5	67	80	3	388	23	23	16	37	1.94
64122147--64122324	27	6.6	27	84	3	205	29	28	15	26	1.96
64122168--64122323	82	1.9	81	88	3	233	29	28	15	26	1.96
64124798--64125105	155	2.0	155	94	0	535	26	23	19	30	1.98
64130013--64130190	27	6.6	27	84	3	205	29	28	15	26	1.96
64130034--64130189	82	1.9	81	88	3	233	29	28	15	26	1.96
64132549--64132676	43	3.0	44	74	5	136	32	27	12	28	1.93
64140657--64140799	58	2.5	57	82	8	157	29	17	6	46	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310