Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  101  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32430356--32430388
8
4.1
8
88
11
50
75
0
0
24
0.80
32430361--32430386
13
2.0
13
100
0
52
76
0
0
23
0.78
32435195--32435335
60
2.3
60
81
6
160
31
19
21
27
1.97
32438434--32438616
79
2.3
81
84
7
232
25
27
22
24
2.00
32438413--32438616
40
5.1
40
82
8
238
25
27
22
24
2.00
32449099--32449159
19
3.1
19
85
4
77
31
3
6
59
1.39
32449100--32449165
21
3.2
20
82
8
80
31
4
6
57
1.43
32449501--32449614
3
39.0
3
68
8
56
34
9
1
54
1.44
32449623--32449664
19
2.2
19
83
8
50
14
7
9
69
1.37
32449629--32449667
19
2.1
19
90
4
62
10
5
10
74
1.21
32450758--32450802
11
4.0
11
86
11
56
75
2
2
20
1.01
32454232--32454324
40
2.3
40
85
3
116
34
21
17
26
1.95
32457824--32457866
20
2.3
18
84
8
59
41
2
0
55
1.12
32463800--32464358
74
7.4
74
84
7
653
31
20
17
30
1.96
32463995--32464376
147
2.6
147
87
1
543
33
19
16
30
1.94
32464376--32464835
72
6.4
72
83
8
500
32
22
17
27
1.96
32464376--32464835
145
3.2
141
83
7
545
32
22
17
27
1.96
32464376--32464842
217
2.2
215
89
5
703
32
22
17
27
1.96
32477007--32477052
21
2.2
21
100
0
92
60
0
13
26
1.32
32477007--32477061
21
2.7
21
88
2
58
60
1
14
23
1.44
32477065--32477138
26
2.7
27
76
14
73
64
0
6
28
1.18
32477045--32477132
34
2.7
31
75
19
81
64
2
7
25
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32478214--32478245
16
2.0
16
93
0
55
12
6
40
40
1.68
32479099--32479657
74
7.4
74
84
7
653
31
20
17
30
1.96
32479294--32479675
147
2.6
147
87
1
543
33
19
16
30
1.94
32479675--32479997
73
4.5
71
79
8
323
32
23
16
27
1.96
32479675--32479997
145
2.2
144
89
3
483
32
23
16
27
1.96
32482808--32482852
23
2.0
23
95
0
81
15
37
17
28
1.91
32492215--32492287
37
2.0
37
84
10
96
64
1
6
27
1.27
32492239--32492300
26
2.3
27
78
13
67
66
0
8
25
1.19
32493373--32493404
16
2.0
16
93
0
55
12
6
40
40
1.68
32494112--32494137
7
3.7
7
100
0
52
0
11
0
88
0.52
32493981--32494310
164
2.0
164
96
1
608
19
6
28
45
1.75
32494277--32494302
7
3.7
7
100
0
52
0
11
0
88
0.52
32494290--32494347
27
2.1
27
96
0
107
5
3
17
74
1.15
32499476--32499541
29
2.3
29
94
0
96
18
18
6
57
1.60
32500547--32500630
40
2.1
40
84
0
105
15
11
33
39
1.84
32501918--32501977
25
2.4
25
83
8
77
35
15
26
23
1.94
32506292--32506349
30
1.9
30
85
0
80
12
29
39
18
1.87
32508262--32508309
21
2.2
21
96
3
87
12
8
6
72
1.26
32509421--32509842
226
1.9
224
87
2
630
28
21
19
30
1.98
32509625--32509889
92
3.0
89
78
4
291
26
21
20
31
1.98
32509091--32509887
44
17.7
45
70
10
295
27
21
19
31
1.97
32521040--32521085
3
15.3
3
83
0
56
58
2
4
34
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32521227--32521255
15
1.9
15
100
0
58
68
0
6
24
1.13
32522104--32522135
16
2.0
16
100
0
64
18
18
0
62
1.33
32524505--32524574
27
2.6
27
93
2
113
31
30
12
25
1.93
32534584--32534849
28
9.5
28
95
0
453
34
26
11
27
1.91
32537040--32537071
16
2.0
16
93
0
55
40
6
0
53
1.26
32542253--32542539
122
2.3
125
82
11
327
33
1
41
22
1.64
32542655--32542691
9
4.1
9
89
0
56
35
8
10
45
1.69
32543852--32543894
11
3.9
11
81
0
50
60
4
0
34
1.17
32544805--32544862
30
1.9
30
89
6
91
43
27
8
20
1.81
32544846--32545203
79
4.6
78
87
4
420
34
17
16
31
1.92
32545271--32545551
80
3.6
78
89
5
421
34
17
15
33
1.91
32545505--32545600
49
2.0
49
97
0
183
32
20
16
30
1.95
32545672--32545777
54
1.9
55
84
5
144
38
19
14
27
1.90
32545757--32545790
13
2.5
13
90
4
50
58
8
11
20
1.59
32545628--32545983
140
2.5
140
95
2
633
36
20
16
25
1.94
32545897--32545930
13
2.5
13
90
4
50
58
8
11
20
1.59
32554035--32554065
12
2.6
12
100
0
62
41
6
25
25
1.79
32556611--32556665
19
2.8
20
91
8
96
5
0
25
69
1.10
32556611--32556665
18
2.9
18
91
5
83
5
0
25
69
1.10
32557443--32557609
87
1.9
87
84
7
223
40
18
8
32
1.81
32557668--32557758
18
4.9
18
78
15
71
62
0
4
32
1.15
32557698--32557857
19
8.7
19
68
12
75
63
1
6
29
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32557807--32557851
21
2.1
21
84
8
56
62
2
8
26
1.37
32557692--32557857
9
18.2
9
68
15
58
63
1
6
28
1.25
32558152--32558202
19
2.7
20
85
11
72
35
1
1
60
1.19
32558229--32558628
87
4.5
86
84
10
374
32
8
22
36
1.84
32558394--32558586
97
2.0
97
98
1
379
38
8
20
32
1.84
32558691--32558746
27
2.0
28
83
10
71
62
0
0
37
0.95
32560217--32560306
10
9.4
10
70
11
64
66
2
3
27
1.19
32560217--32560297
19
4.3
19
72
12
60
66
2
3
27
1.21
32560228--32560315
28
3.1
28
80
8
115
63
1
3
31
1.18
32560216--32560315
38
2.6
39
78
6
98
65
2
3
30
1.19
32560218--32560353
57
2.4
58
84
9
181
62
2
5
28
1.33
32560617--32560719
10
10.3
10
66
19
54
37
1
0
59
1.15
32560729--32560853
66
1.9
64
86
3
178
26
8
19
46
1.77
32563259--32563322
20
3.0
21
76
15
69
59
6
3
31
1.38
32567291--32567388
31
3.1
31
91
2
160
21
7
11
60
1.54
32570098--32570122
13
1.9
13
100
0
50
56
28
8
8
1.57
32573674--32573725
17
2.9
17
81
10
68
42
15
19
23
1.89
32573714--32573754
7
5.9
7
100
0
82
58
0
14
26
1.37
32575479--32575511
13
2.5
13
90
0
57
6
27
30
36
1.81
32576344--32576404
26
2.3
26
82
0
68
9
39
9
40
1.72
32576697--32576778
5
16.2
5
77
10
69
20
2
2
74
1.05
32576697--32576758
16
4.0
16
83
12
76
17
3
1
77
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32576697--32576778
30
2.8
28
81
10
76
20
2
2
74
1.05
32582973--32583150
27
6.6
27
83
5
180
29
28
15
26
1.96
32582994--32583149
82
1.9
81
86
3
224
28
28
16
26
1.97
32590750--32591208
226
2.0
226
99
0
900
28
18
11
40
1.86
32594259--32594521
40
6.6
39
86
4
278
25
27
21
25
1.99
32594259--32594521
120
2.2
119
82
4
307
25
27
21
25
1.99
32594453--32594530
40
1.9
41
82
10
97
26
28
20
24
1.99
32602192--32602414
40
5.6
40
85
3
236
26
27
21
24
1.99
32602346--32602423
40
1.9
41
82
10
97
26
28
21
23
1.99
32605280--32605785
254
2.0
254
86
0
708
38
11
21
29
1.88
32608182--32608353
93
1.8
93
93
0
299
27
29
20
22
1.99
32608175--32608350
46
3.8
46
81
15
218
28
28
20
21
1.98
32608454--32608577
62
2.0
62
98
0
239
33
20
10
35
1.87
32610801--32610850
15
3.4
15
86
2
66
60
12
18
10
1.59
32622652--32622684
16
2.1
16
100
0
66
57
18
6
18
1.60
32633039--32633070
14
2.4
13
90
10
55
62
12
6
18
1.50
32637206--32637267
26
2.4
26
75
24
76
66
0
30
3
1.08
32647789--32647861
38
1.9
38
88
0
110
21
23
26
28
1.99
32647832--32648063
43
5.4
43
90
1
342
13
22
33
30
1.93
32648764--32649471
236
3.0
236
97
0
1321
25
16
21
35
1.94
32652720--32652748
12
2.3
13
94
5
51
41
0
6
51
1.28
32653871--32654025
43
3.6
43
89
6
242
13
25
30
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32655931--32656266
112
3.0
112
84
3
412
26
8
31
33
1.87
32659321--32659345
3
8.3
3
100
0
50
32
0
0
68
0.90
32659780--32659831
24
2.2
24
89
0
77
55
9
1
32
1.43
32662168--32662198
3
10.3
3
92
0
53
64
0
3
32
1.09
32662431--32662485
4
13.8
4
80
0
65
69
0
3
27
1.05
32666987--32667274
51
5.9
51
71
15
171
28
19
18
34
1.95
32667049--32667635
96
6.3
96
76
7
480
28
19
18
33
1.95
32667134--32667764
45
13.7
45
73
9
398
28
19
17
34
1.94
32667512--32667681
89
1.9
90
88
1
261
28
19
18
32
1.96
32667631--32667730
52
1.9
51
83
2
128
29
17
17
37
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310