genome.fa.s13.2.7.7.80.10.50.1000.297.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  297  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97849051--97849324	46	5.8	48	75	11	137	28	20	28	22	1.99
97851238--97851500	40	6.6	39	86	4	278	25	27	21	25	1.99
97851238--97851500	120	2.2	119	82	4	307	25	27	21	25	1.99
97851432--97851509	40	1.9	41	82	10	97	26	28	20	24	1.99
97859188--97859450	40	6.6	39	86	4	278	25	27	21	25	1.99
97859188--97859450	120	2.2	119	82	4	307	25	27	21	25	1.99
97859382--97859459	40	1.9	41	82	10	97	26	28	20	24	1.99
97861521--97861561	22	1.9	21	85	5	55	12	41	26	19	1.87
97863633--97863787	43	3.6	43	76	8	138	31	25	18	25	1.97
97864877--97864901	13	1.9	13	100	0	50	40	24	4	32	1.73
97865379--97865425	20	2.3	20	85	7	60	40	2	2	55	1.24
97866767--97866908	41	3.5	41	85	3	180	39	16	19	24	1.92
97866937--97867074	54	2.8	46	74	18	132	49	28	0	21	1.55
97866946--97867061	54	2.1	55	87	1	162	49	29	0	20	1.55
97866987--97867036	17	2.9	18	80	13	54	50	32	2	16	1.56
97866987--97867037	24	2.1	24	82	7	59	49	33	1	15	1.56
97867869--97867913	14	3.2	14	90	0	72	22	0	28	48	1.50
97867937--97867979	15	3.0	15	83	10	63	18	0	34	46	1.50
97867932--97867974	22	2.0	22	85	0	59	20	0	32	46	1.51
97868539--97868613	8	8.9	8	75	16	62	66	4	0	29	1.09
97868565--97868620	15	3.7	15	76	4	58	67	1	0	30	1.01
97868565--97868598	7	4.7	7	92	3	50	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97872530--97872626	23	4.1	23	85	4	113	35	5	21	38	1.76
97873030--97873076	19	2.5	19	76	10	51	21	2	4	72	1.12
97873341--97873422	43	1.9	43	84	0	110	23	18	29	29	1.97
97877642--97877666	13	1.9	13	100	0	50	16	0	44	40	1.47
97897364--97897419	21	2.7	21	91	0	94	10	33	28	26	1.90
97901922--97902109	94	2.0	94	98	0	367	33	13	23	28	1.93
97906712--97906893	40	4.6	40	90	2	278	24	22	26	26	2.00
97917045--97917161	47	2.5	48	82	10	127	26	17	29	26	1.98
97918115--97918162	19	2.5	19	86	0	60	20	31	37	10	1.87
97923481--97923523	19	2.4	18	84	7	52	30	16	9	44	1.79
97927729--97927808	39	2.1	39	100	0	160	31	5	31	32	1.79
97941999--97942165	43	3.9	42	79	6	149	27	14	25	32	1.95
97943940--97944163	40	5.6	40	86	6	310	25	26	23	24	2.00
97943940--97944163	83	2.8	80	88	4	317	25	26	23	24	2.00
97954280--97954460	43	4.4	43	91	4	259	25	27	23	23	2.00
97959779--97959822	21	2.2	20	84	12	54	43	11	9	36	1.72
97968251--97968329	31	2.5	31	97	0	149	26	25	18	29	1.98
97968353--97968444	42	2.2	42	92	0	148	34	21	14	29	1.93
97968589--97968711	26	4.8	26	90	1	187	26	23	22	26	2.00
97968589--97968711	52	2.4	51	95	2	221	26	23	22	26	2.00
97968779--97968816	11	3.6	11	86	13	62	31	18	13	36	1.89
97968761--97968816	20	2.8	20	89	10	80	30	17	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97969664--97969749	27	3.1	27	75	17	86	36	9	16	38	1.81
97969727--97969848	27	4.5	27	75	10	106	28	8	22	40	1.83
97969751--97969850	27	3.7	27	80	4	130	28	9	23	40	1.84
97969882--97970052	27	6.3	27	93	0	261	37	7	26	28	1.84
97969882--97970072	81	2.4	81	86	0	229	37	7	25	29	1.84
97972175--97972214	20	2.0	20	90	4	64	50	22	2	25	1.62
97980995--97981115	47	2.6	47	83	0	152	34	8	29	27	1.86
97983228--97983299	21	3.4	21	73	7	74	51	16	18	13	1.77
97983184--97983321	42	3.3	41	83	4	168	44	18	23	13	1.86
97988164--97988341	27	6.6	27	84	3	205	29	28	15	26	1.96
97988185--97988340	82	1.9	81	88	3	233	29	28	15	26	1.96
97998868--97999122	96	2.7	92	79	8	250	23	30	18	27	1.98
97998962--97999122	46	3.5	44	82	9	153	23	29	19	26	1.98
97998875--97999176	140	2.1	141	80	10	316	24	27	18	29	1.98
98006676--98006890	46	4.6	47	75	8	181	24	27	18	28	1.98
98006723--98006892	94	1.8	92	87	5	252	24	27	19	29	1.98
98009694--98009718	12	2.1	12	100	0	50	32	40	20	8	1.81
98014851--98015300	47	9.6	47	97	0	828	29	30	8	32	1.86
98019628--98019707	39	2.1	39	97	0	151	21	20	18	40	1.92
98026987--98027025	9	4.3	9	83	0	51	5	20	0	74	1.01
98030103--98030278	46	3.8	46	79	12	216	20	21	29	28	1.98
98030100--98030271	93	1.8	93	96	0	317	20	21	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98037678--98037853	46	3.8	46	79	12	216	20	21	29	28	1.98
98037675--98037846	93	1.8	93	96	0	317	20	21	29	27	1.98
98043017--98043055	18	2.2	18	85	0	51	56	17	17	7	1.64
98043028--98043092	6	10.8	6	75	18	55	52	15	15	16	1.75
98043028--98043097	24	2.9	24	85	8	97	51	14	15	18	1.77
98043822--98044206	27	14.3	26	81	7	421	39	9	22	29	1.84
98043822--98044206	54	7.1	54	88	1	574	39	9	22	29	1.84
98047086--98047151	27	2.4	27	82	5	80	33	12	18	36	1.88
98047113--98047193	42	1.9	42	89	0	126	29	11	22	37	1.89
98047155--98047337	27	6.9	27	83	3	185	32	9	19	38	1.83
98047150--98047337	80	2.3	80	79	5	211	32	9	19	38	1.84
98047155--98047344	53	3.6	54	80	6	208	32	9	20	38	1.84
98050642--98050681	20	2.0	20	95	0	71	37	7	20	35	1.81
98063090--98063305	43	4.9	44	77	12	181	22	17	29	30	1.96
98063090--98063243	84	1.8	84	85	0	218	20	16	31	31	1.95
98063216--98063315	51	2.0	51	89	0	155	24	19	27	30	1.98
98066651--98066693	11	4.1	10	80	11	50	16	2	27	53	1.55
98073467--98073527	24	2.5	24	86	5	79	21	16	27	34	1.95
98077098--98077360	40	6.6	40	88	3	325	24	20	27	26	1.99
98077137--98077395	80	3.3	80	85	3	256	25	20	27	25	1.99
98079788--98079946	43	3.7	42	80	9	162	22	17	28	31	1.97
98082477--98082541	34	1.9	34	90	3	105	30	23	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98083369--98083411	11	4.1	10	80	11	50	16	4	27	51	1.64
98085642--98085777	39	3.5	38	82	6	155	36	18	25	19	1.94
98090366--98090734	48	7.7	46	77	8	315	26	28	18	26	1.98
98090366--98090745	96	3.9	95	82	4	397	27	28	17	26	1.98
98090366--98090746	144	2.6	146	84	4	468	27	28	17	26	1.98
98100713--98100886	96	1.8	96	87	2	260	30	27	16	26	1.96
98100621--98100950	48	6.8	48	72	7	209	29	27	16	26	1.97
98106993--98107201	40	5.2	40	88	3	292	23	23	26	26	2.00
98106997--98107201	83	2.5	80	88	5	288	22	23	27	25	2.00
98116030--98116195	43	3.9	43	76	8	135	33	24	14	28	1.94
98121377--98121414	16	2.4	16	95	0	67	42	23	2	31	1.68
98123671--98123770	38	2.6	38	79	0	128	34	14	17	35	1.89
98126160--98126236	10	7.7	10	70	11	59	20	27	29	22	1.98
98126160--98126246	20	4.3	20	92	0	120	21	26	29	21	1.99
98126159--98126263	20	5.4	19	87	4	88	20	27	30	20	1.98
98128630--98128809	54	3.3	54	82	3	193	27	14	17	40	1.88
98128629--98128809	27	6.7	27	72	6	143	27	14	17	40	1.88
98131889--98131936	24	2.0	24	95	0	87	20	39	12	27	1.89
98133058--98133252	97	2.0	97	95	0	354	23	20	26	30	1.98
98137748--98137803	3	18.0	3	83	3	67	62	1	3	32	1.23
98137759--98137818	29	2.1	29	84	6	77	61	3	6	28	1.37
98137976--98138021	23	1.9	23	86	8	65	63	2	0	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98137977--98138053	39	2.0	39	87	5	111	59	2	1	36	1.19
98137992--98138032	16	2.6	16	92	3	66	58	2	0	39	1.11
98137978--98138048	27	2.7	26	81	16	76	59	2	1	36	1.21
98138243--98138299	24	2.4	24	81	0	69	61	8	3	26	1.42
98140435--98140538	40	2.6	40	92	0	172	22	29	24	24	1.99
98149644--98149685	18	2.4	17	88	11	59	59	2	2	35	1.23
98149767--98149817	20	2.4	21	80	9	59	49	1	9	39	1.47
98149779--98149817	20	2.0	20	89	0	60	53	2	7	35	1.43
98150649--98150712	22	3.0	21	79	6	67	64	0	7	28	1.21
98152380--98152410	10	3.1	10	95	0	53	41	0	19	38	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310