genome.fa.s13.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  189  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61594882--61595131	100	2.4	103	88	6	364	26	24	29	20	1.99
61603529--61603579	26	1.9	27	88	4	77	37	0	11	50	1.39
61603866--61603913	3	16.0	3	100	0	96	33	0	0	66	0.92
61613284--61613462	50	3.4	50	73	16	166	38	0	18	41	1.55
61613284--61613376	23	3.8	26	69	24	76	37	0	17	45	1.49
61613412--61613489	36	2.2	36	93	2	131	34	1	20	43	1.60
61613452--61613523	23	3.1	23	70	20	69	36	1	19	43	1.60
61622171--61622209	20	2.0	20	90	5	62	69	0	25	5	1.09
61628248--61628287	21	1.9	21	85	10	55	22	2	2	72	1.09
61628249--61628321	31	2.4	30	80	15	78	26	4	4	65	1.28
61630965--61631002	20	1.9	19	89	5	58	44	13	15	26	1.83
61636117--61636146	15	1.9	16	93	6	53	60	6	6	26	1.47
61639550--61639606	27	2.0	28	90	6	89	12	24	0	63	1.29
61644326--61644359	13	2.5	13	90	4	50	85	2	11	0	0.71
61644865--61644897	13	2.4	14	85	10	50	24	9	24	42	1.83
61647388--61647465	32	2.4	34	85	10	108	26	3	10	58	1.48
61647531--61647570	18	2.2	18	86	8	55	20	0	12	67	1.22
61654107--61654147	21	2.0	21	90	0	64	29	21	29	19	1.98
61659848--61660089	81	3.0	81	90	0	376	29	24	22	23	1.99
61670717--61670753	9	4.1	9	89	0	56	48	13	8	29	1.71
61671105--61671165	19	3.4	17	78	19	63	22	31	0	45	1.53
61671134--61671173	20	2.0	20	85	9	55	22	35	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61671340--61671368	9	3.2	9	100	0	58	31	0	0	68	0.89
61672030--61672193	82	2.0	82	89	0	247	31	15	10	42	1.82
61676882--61676930	22	2.2	22	92	0	80	30	20	14	34	1.92
61680869--61680905	19	2.0	18	89	5	56	56	0	2	40	1.13
61680864--61680908	19	2.3	18	82	14	54	60	0	2	37	1.09
61681240--61681270	11	2.9	11	95	4	55	9	0	6	83	0.79
61689452--61689524	37	2.0	37	94	0	128	43	9	19	27	1.81
61689923--61689954	5	6.4	5	100	0	64	59	0	0	40	0.97
61697721--61697801	31	2.9	27	69	25	69	55	8	14	20	1.66
61699031--61699101	31	2.4	30	83	4	81	25	9	8	56	1.60
61700276--61700317	9	4.7	9	84	0	57	33	11	19	35	1.88
61700371--61700407	9	4.1	9	92	0	65	45	13	10	29	1.77
61700621--61700680	30	2.0	31	83	9	79	20	38	0	41	1.52
61700934--61700962	9	3.2	9	100	0	58	31	0	0	68	0.89
61701333--61701358	5	5.2	5	100	0	52	23	19	19	38	1.93
61701448--61701473	5	5.2	5	100	0	52	19	19	19	42	1.90
61705531--61705556	11	2.4	11	100	0	52	7	0	0	92	0.39
61707700--61708064	44	8.2	43	80	7	324	29	18	18	33	1.95
61707725--61708064	85	3.9	85	78	9	358	29	19	18	33	1.95
61707716--61708160	182	2.5	179	80	6	454	28	19	19	33	1.96
61711252--61711292	18	2.3	18	100	0	82	14	17	36	31	1.90
61712626--61712695	35	2.0	35	97	0	131	21	34	17	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61715946--61715990	19	2.3	20	85	11	58	46	4	17	31	1.68
61719717--61719768	23	2.3	22	75	15	52	46	1	11	40	1.51
61742126--61742282	80	2.0	80	94	0	278	52	12	8	26	1.67
61747180--61747241	7	8.9	7	77	20	51	19	4	0	75	0.97
61747178--61747234	30	1.9	29	89	10	89	17	7	0	75	1.02
61747396--61747478	42	2.0	42	82	2	103	37	37	8	16	1.80
61747580--61747671	46	2.0	46	93	0	157	11	47	14	26	1.78
61748248--61748478	118	2.0	118	91	0	372	22	16	31	29	1.96
61748604--61748641	11	3.4	11	96	3	67	89	0	10	0	0.49
61748604--61748641	12	3.2	12	92	3	60	89	0	10	0	0.49
61760596--61760639	23	1.9	23	90	0	70	61	4	2	31	1.28
61760600--61760642	11	3.8	11	80	17	52	65	2	2	30	1.18
61762124--61762241	57	2.1	57	96	0	218	28	25	16	29	1.96
61764739--61764779	20	2.0	20	100	0	82	17	9	34	39	1.82
61769554--61769601	12	3.8	12	79	15	60	62	14	0	22	1.32
61769549--61769605	27	2.1	27	100	0	114	57	14	0	28	1.37
61786109--61786155	21	2.2	22	92	3	78	21	19	38	21	1.94
61789319--61789365	21	2.2	22	92	3	78	21	19	38	21	1.94
61790610--61790664	27	2.0	27	96	0	101	34	23	9	32	1.86
61791448--61791478	6	5.2	6	100	0	62	32	0	67	0	0.91
61791983--61792025	15	2.7	16	75	13	52	30	4	0	65	1.13
61793300--61793343	22	2.0	22	86	8	63	47	2	4	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61797048--61797229	89	2.1	85	84	9	226	33	9	18	38	1.83
61797249--61797306	23	2.6	23	77	2	73	51	0	5	43	1.24
61805262--61805294	13	2.6	13	90	4	50	48	12	0	39	1.40
61814667--61814699	15	2.2	15	100	0	66	33	6	24	36	1.80
61817105--61817139	16	2.1	17	89	5	54	60	0	0	40	0.97
61820013--61820067	21	2.6	23	77	16	64	45	0	3	50	1.19
61834726--61834873	77	1.9	77	88	2	226	30	19	10	39	1.86
61841886--61841943	21	2.9	21	84	5	75	43	15	25	15	1.86
61845908--61845945	11	3.5	11	85	0	58	26	10	0	63	1.27
61856543--61856598	25	2.2	25	77	0	58	48	1	1	48	1.22
61869655--61869693	19	2.1	19	85	9	53	38	5	2	53	1.37
61871908--61871959	19	2.7	20	75	22	56	53	1	0	44	1.11
61871921--61871953	9	3.6	9	92	8	57	57	0	0	42	0.98
61871952--61871991	9	4.3	9	81	6	53	35	2	0	62	1.09
61871944--61872002	25	2.3	25	80	8	66	40	1	1	55	1.20
61871954--61871991	19	2.0	19	89	0	58	36	2	0	60	1.11
61872009--61872042	9	3.9	9	88	7	52	41	0	0	58	0.98
61871919--61872043	18	6.8	18	67	19	71	44	2	0	52	1.19
61872142--61872176	16	2.2	16	90	5	54	74	0	0	25	0.82
61873342--61873394	21	2.7	19	83	13	63	37	0	1	60	1.08
61875182--61875206	12	2.1	12	100	0	50	20	24	16	40	1.91
61877045--61877090	23	2.0	22	84	16	58	56	10	17	15	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61877037--61877090	25	2.2	24	81	12	65	59	9	16	14	1.60
61877364--61877727	3	121.3	3	66	13	65	29	7	3	59	1.41
61877888--61878138	121	2.0	123	81	5	290	33	10	15	40	1.82
61881977--61882026	19	2.5	20	90	3	75	0	6	6	88	0.65
61882051--61882091	1	41.0	1	90	0	64	0	0	4	95	0.28
61882053--61882092	20	2.0	20	95	0	71	0	0	7	92	0.38
61881996--61882117	64	1.9	64	100	0	244	18	1	9	70	1.23
61886646--61886677	16	2.0	16	93	0	55	53	0	0	46	1.00
61887928--61887972	20	2.2	21	96	4	83	46	22	0	31	1.52
61904522--61904555	17	1.9	18	94	5	61	32	11	0	55	1.36
61906613--61906664	26	2.0	25	85	3	68	51	0	1	46	1.12
61907921--61907965	20	2.2	21	96	4	83	46	22	0	31	1.52
61911266--61911312	25	2.0	25	83	8	62	27	12	6	53	1.63
61911573--61911694	46	2.7	46	89	2	183	18	23	15	42	1.88
61911895--61912022	38	3.0	46	78	17	173	24	23	15	36	1.94
61911384--61912019	322	2.0	314	95	3	1130	26	21	11	40	1.87
61916046--61916090	20	2.2	21	88	11	67	46	17	0	35	1.49
61923295--61923344	26	1.9	26	84	8	66	24	14	22	40	1.90
61924832--61924915	26	3.2	25	90	6	123	36	22	4	35	1.76
61929134--61929173	8	5.0	8	81	0	53	35	5	0	60	1.19
61929137--61929189	24	2.2	25	83	10	65	37	7	1	52	1.41
61930691--61930752	31	2.0	31	100	0	124	35	9	19	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61933722--61933778	27	2.1	27	100	0	114	29	7	26	36	1.83
61936283--61936328	17	2.6	17	79	6	56	34	0	2	63	1.07
61937071--61937118	2	24.5	2	91	4	80	47	0	52	0	1.00
61937077--61937149	10	7.3	10	83	9	51	36	0	63	0	0.95
61937116--61937150	13	2.6	14	86	9	54	22	0	77	0	0.78
61941235--61941320	30	2.9	30	85	3	120	19	33	29	17	1.95
61943354--61943417	23	2.8	23	82	15	71	26	6	3	64	1.33
61945150--61945357	53	3.9	54	81	5	233	23	23	17	36	1.95
61946845--61946903	28	2.1	27	93	3	100	18	16	11	52	1.74
61952549--61952590	21	2.0	21	100	0	84	52	9	14	23	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310