genome.fa.s13.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  173  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56595462--56595670	92	2.3	91	84	6	217	46	4	3	44	1.42
56599258--56599330	29	2.5	29	88	6	103	47	13	15	23	1.80
56599431--56599496	35	1.9	35	90	3	107	42	10	0	46	1.38
56601185--56601217	17	1.9	17	88	11	50	30	9	6	54	1.56
56602915--56603184	134	2.0	135	94	0	479	25	13	25	35	1.93
56607852--56607894	20	2.4	17	80	11	50	55	6	18	18	1.64
56612086--56612177	27	3.4	27	98	0	175	30	23	25	20	1.99
56613418--56613527	26	4.2	26	94	2	168	36	23	4	35	1.76
56613636--56613670	13	2.7	13	95	0	61	14	34	5	45	1.68
56617247--56617284	16	2.4	16	95	0	67	36	13	7	42	1.73
56628502--56628555	11	5.0	11	86	4	65	27	5	50	16	1.68
56632598--56632694	18	5.4	18	83	0	122	37	12	17	32	1.87
56635052--56635150	33	3.2	33	61	24	77	37	4	6	52	1.45
56635045--56635174	61	2.1	62	95	2	235	36	4	6	52	1.47
56640012--56640037	11	2.4	11	100	0	52	69	0	0	30	0.89
56644183--56644293	14	7.6	14	72	17	68	25	7	2	64	1.32
56644183--56644290	29	3.8	28	73	22	82	25	7	2	64	1.33
56644222--56644334	44	2.6	44	80	13	119	29	7	0	61	1.30
56644258--56644303	15	2.9	15	83	6	56	23	6	2	67	1.25
56644226--56644303	15	4.7	16	71	21	54	25	6	1	66	1.23
56644377--56644401	4	6.2	4	100	0	50	24	0	0	76	0.80
56644447--56644506	25	2.5	23	75	21	61	31	8	1	58	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56644874--56644923	15	3.1	16	80	8	66	82	4	0	14	0.82
56644870--56644920	24	2.1	24	89	7	77	80	5	0	13	0.89
56644876--56644929	16	3.5	15	82	12	65	79	3	0	16	0.87
56665538--56665584	22	2.2	21	84	3	58	36	21	8	34	1.84
56665555--56665594	19	2.0	21	90	9	66	35	17	10	37	1.83
56671477--56671518	20	2.1	20	100	0	84	38	4	21	35	1.75
56673571--56673643	36	2.0	36	94	0	128	23	9	19	47	1.78
56673582--56673658	36	2.1	36	85	0	100	23	14	18	44	1.86
56683488--56683544	18	3.2	18	94	0	96	29	17	26	26	1.97
56684563--56684590	14	2.0	14	100	0	56	71	7	0	21	1.09
56686983--56687052	16	4.4	16	90	0	104	37	4	25	32	1.76
56687293--56687325	17	1.9	17	93	0	57	60	0	0	39	0.97
56687735--56687819	43	2.0	43	92	0	143	31	27	10	30	1.90
56691911--56692069	68	2.3	70	85	5	214	49	5	32	13	1.63
56694140--56694173	18	1.9	18	94	5	61	55	5	11	26	1.58
56694666--56694848	37	5.0	37	95	1	316	24	21	16	37	1.93
56694812--56694982	46	3.6	46	86	9	234	28	22	14	35	1.92
56694855--56694976	52	2.3	52	92	2	199	27	22	13	36	1.91
56698669--56698717	24	2.0	26	84	8	66	55	8	8	28	1.58
56699343--56699625	96	2.9	96	94	0	467	32	25	13	29	1.93
56700330--56700393	10	6.4	10	81	15	53	76	1	0	21	0.87
56700344--56700394	5	9.4	5	80	16	57	78	1	0	19	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56700332--56700394	15	4.3	15	76	17	51	77	1	0	20	0.85
56703227--56703259	12	2.8	12	95	0	57	69	0	6	24	1.10
56703415--56703448	18	1.9	18	94	5	61	55	5	11	26	1.58
56703744--56703801	30	1.9	30	89	0	89	41	3	24	31	1.71
56704013--56704044	13	2.5	13	94	0	55	31	0	12	56	1.37
56704139--56704323	50	3.7	50	99	0	361	26	23	32	16	1.96
56718158--56718204	11	4.4	10	85	15	67	19	29	0	51	1.47
56718161--56718217	11	5.2	11	85	10	64	21	31	0	47	1.51
56719484--56719522	18	2.2	18	85	0	51	20	23	10	46	1.81
56719784--56719825	21	2.0	21	85	0	57	28	40	26	4	1.76
56722989--56723024	7	5.1	7	93	0	63	44	38	0	16	1.48
56729381--56729446	15	4.3	15	74	20	57	74	0	1	24	0.91
56729368--56729429	11	5.1	12	78	18	58	72	0	0	27	0.85
56729384--56729439	7	7.9	7	78	9	60	78	0	0	21	0.75
56729368--56729439	36	2.0	36	89	2	110	75	0	0	25	0.81
56731276--56731305	15	2.1	14	93	6	51	53	13	6	26	1.64
56734295--56734375	41	2.0	41	95	0	144	32	12	3	51	1.57
56736185--56736581	47	8.4	47	95	1	695	29	30	8	31	1.87
56748929--56749167	37	6.6	37	69	14	131	33	13	15	38	1.86
56748845--56749271	142	3.0	142	83	2	554	32	15	14	36	1.89
56749108--56749589	208	2.3	208	85	1	626	32	15	14	36	1.89
56749108--56749589	105	4.6	105	84	1	576	32	15	14	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56754617--56754711	44	2.2	44	94	0	163	24	22	24	29	1.99
56754812--56755091	85	3.2	85	72	8	267	30	18	17	33	1.94
56754797--56755155	175	2.1	175	92	0	601	29	19	17	33	1.94
56766163--56766198	17	2.1	17	100	0	72	72	5	5	16	1.23
56785336--56785483	49	3.0	49	72	10	149	20	20	30	28	1.98
56785352--56785504	49	3.1	48	69	14	123	23	18	30	26	1.98
56786012--56786095	5	16.8	5	80	4	98	39	1	19	40	1.59
56792135--56792174	21	1.9	21	84	0	53	47	0	30	22	1.52
56800046--56800497	172	2.6	173	91	2	721	30	19	23	26	1.98
56800361--56800680	131	2.4	131	88	4	459	30	20	23	25	1.99
56800635--56801038	44	9.2	44	67	11	130	31	18	23	25	1.97
56800492--56800856	175	2.1	175	89	1	552	30	20	22	25	1.98
56800361--56800739	131	2.9	131	83	5	358	30	19	24	25	1.98
56800189--56801067	306	2.9	306	89	3	1319	31	19	23	26	1.98
56800667--56801004	131	2.6	132	88	2	495	31	19	23	25	1.98
56801054--56801217	50	3.3	50	72	10	172	31	23	20	24	1.98
56801054--56801332	99	2.8	99	85	4	359	33	22	19	24	1.97
56801105--56801349	50	4.9	49	73	10	165	34	22	19	24	1.96
56802941--56802988	21	2.5	19	77	12	53	33	2	4	60	1.27
56807316--56807350	17	2.1	17	89	10	54	17	14	8	60	1.58
56807706--56807951	42	5.8	42	83	3	262	23	22	23	30	1.99
56807748--56807951	85	2.4	83	86	5	275	22	22	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56808267--56808310	21	2.1	21	86	0	61	4	47	15	31	1.66
56809527--56809562	16	2.2	16	90	0	54	55	2	11	30	1.49
56811010--56811097	44	2.0	44	90	0	140	36	22	15	25	1.94
56811810--56811848	14	2.8	14	84	0	51	53	43	0	2	1.14
56811822--56811856	7	4.9	7	93	6	61	45	54	0	0	0.99
56811822--56811863	15	2.9	15	85	3	50	50	47	0	2	1.14
56812331--56812390	14	4.4	14	86	12	65	33	48	0	18	1.48
56812353--56812389	7	5.3	7	93	0	65	27	56	0	16	1.40
56812341--56812389	14	3.6	14	91	2	73	30	53	0	16	1.43
56812756--56812791	18	2.0	18	89	10	56	69	5	0	25	1.10
56812760--56812799	18	2.2	19	86	4	55	70	5	0	25	1.08
56812898--56813554	113	5.8	113	77	6	488	26	23	18	31	1.97
56812898--56813573	114	5.9	113	77	6	524	26	23	18	31	1.97
56812998--56813554	229	2.4	227	79	4	552	27	23	18	30	1.98
56822034--56822108	18	4.2	18	73	11	64	49	1	1	48	1.18
56835188--56835222	14	2.5	14	90	0	52	14	34	2	48	1.58
56841979--56842030	24	2.2	24	86	6	70	32	1	5	59	1.32
56842178--56842212	17	2.1	17	89	10	54	17	14	5	62	1.49
56844497--56844552	25	2.2	26	90	6	87	28	0	1	69	0.98
56844880--56844918	14	2.7	15	88	11	64	38	10	20	30	1.86
56845376--56845413	14	2.4	16	83	16	53	47	0	7	44	1.32
56845377--56845451	28	2.7	26	73	20	62	46	1	4	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56845432--56845467	18	1.9	18	88	5	54	58	2	0	38	1.13
56845484--56845525	9	4.9	9	85	11	61	45	0	0	54	0.99
56845468--56845525	16	3.6	16	80	11	64	48	0	0	51	1.00
56845835--56845872	14	2.4	16	83	16	53	47	0	7	44	1.32
56845836--56845910	28	2.7	26	73	20	62	46	1	4	48	1.29
56845344--56846261	459	2.0	459	100	0	1836	44	5	6	43	1.53
56845891--56845926	18	1.9	18	88	5	54	58	2	0	38	1.13
56845943--56845984	9	4.9	9	85	11	61	45	0	0	54	0.99
56845927--56845984	16	3.6	16	80	11	64	48	0	0	51	1.00
56846363--56846410	24	2.0	24	84	8	62	20	31	0	47	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310