genome.fa.s13.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  170  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55724845--55724903	30	2.0	30	89	0	91	30	5	11	52	1.59
55725392--55725416	13	1.9	13	100	0	50	48	16	4	32	1.64
55725422--55725474	26	2.0	26	85	0	70	62	15	3	18	1.47
55730351--55730393	20	2.2	20	100	0	86	32	25	13	27	1.94
55731089--55731181	43	2.2	44	90	3	145	51	12	6	29	1.65
55731203--55731242	19	2.2	18	86	13	55	42	15	2	40	1.60
55738233--55738565	74	4.5	74	85	2	418	30	19	17	32	1.95
55738861--55739002	73	1.9	73	85	0	194	29	23	19	27	1.98
55739057--55739558	73	6.7	73	84	6	542	33	18	17	30	1.94
55738860--55739485	232	2.7	232	83	5	757	33	19	18	28	1.96
55739558--55739730	68	2.5	69	79	6	181	33	21	13	31	1.92
55753899--55753993	42	2.3	43	88	3	140	50	12	4	32	1.59
55754011--55754050	19	2.2	18	86	13	55	42	15	2	40	1.60
55761529--55761620	46	2.0	47	97	2	177	33	20	15	30	1.93
55762626--55762657	12	2.7	12	90	0	55	46	12	3	37	1.57
55770650--55770716	35	1.9	35	87	0	98	28	2	25	43	1.69
55770776--55770843	35	2.0	34	88	8	102	39	0	16	44	1.48
55770836--55770871	17	2.1	17	89	0	54	47	0	13	38	1.44
55770866--55770898	7	4.7	7	92	0	57	15	0	27	57	1.38
55770904--55770984	28	2.8	29	85	7	103	39	1	17	41	1.57
55771044--55771549	126	4.0	126	86	4	691	39	15	16	27	1.90
55772402--55772509	54	2.0	54	92	3	182	34	12	28	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55775100--55775143	18	2.4	18	92	0	70	43	9	27	20	1.82
55780518--55780542	7	3.6	7	100	0	50	60	12	0	28	1.32
55781457--55781555	30	3.5	29	70	19	84	62	4	4	29	1.32
55781466--55781576	53	2.1	54	93	1	188	62	2	2	32	1.23
55782658--55782703	14	2.9	16	81	12	60	34	2	2	60	1.21
55782063--55782861	249	3.3	238	79	11	661	38	9	6	45	1.63
55786862--55786930	36	1.9	36	81	0	84	26	23	31	18	1.97
55803640--55803727	23	3.9	23	69	19	60	43	5	5	45	1.51
55803668--55803738	19	3.4	19	72	20	70	45	2	4	47	1.36
55803656--55803750	44	2.2	44	98	0	181	45	4	4	46	1.42
55807840--55807876	17	2.2	18	90	9	60	64	0	0	35	0.94
55810383--55810558	46	3.8	45	81	10	212	21	21	29	28	1.98
55810380--55810550	93	1.8	93	94	0	306	21	21	29	27	1.98
55812854--55812896	11	3.8	11	80	17	52	30	2	2	65	1.18
55816234--55816265	11	2.9	11	100	0	64	65	0	0	34	0.93
55822114--55822166	25	2.1	25	89	0	79	54	1	1	41	1.22
55822169--55822259	42	2.1	43	91	2	148	43	0	1	54	1.07
55822235--55822264	14	2.2	13	94	5	51	26	0	0	73	0.84
55822185--55822261	21	3.7	21	75	6	84	38	0	1	59	1.06
55822459--55822491	16	2.1	16	94	0	57	36	27	0	36	1.57
55823857--55823918	27	2.1	30	85	11	85	27	0	0	72	0.85
55827079--55827159	20	3.7	21	73	22	60	60	2	1	35	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55827079--55827121	21	2.0	21	86	0	59	58	0	0	41	0.98
55833231--55833307	32	2.4	32	80	0	91	24	24	6	44	1.77
55834358--55834438	20	3.7	21	73	22	60	60	2	1	35	1.18
55834358--55834400	21	2.0	21	86	0	59	58	0	0	41	0.98
55838169--55838206	17	2.3	17	90	4	60	78	2	0	18	0.86
55838169--55838206	8	4.6	8	90	6	58	78	2	0	18	0.86
55838322--55838357	16	2.2	16	90	0	54	0	50	0	50	1.00
55838882--55838912	14	2.2	14	94	0	53	32	0	0	67	0.91
55851794--55852099	73	4.3	69	80	6	281	27	16	23	33	1.95
55851865--55852093	73	3.2	69	82	6	289	25	16	25	32	1.96
55852089--55852124	14	2.6	14	90	0	54	19	25	2	52	1.59
55852175--55852199	13	1.9	13	100	0	50	24	12	0	64	1.27
55852044--55852241	87	2.3	86	81	4	229	24	17	22	35	1.95
55852215--55852485	128	2.1	128	97	0	515	30	17	19	32	1.95
55853624--55853669	8	5.6	8	92	5	65	80	2	0	17	0.81
55853641--55853673	8	3.7	9	88	12	50	84	0	0	15	0.61
55853624--55853673	17	2.9	17	85	5	64	80	2	0	18	0.82
55859095--55859202	26	4.2	26	93	0	189	32	7	24	36	1.83
55860914--55860966	26	2.0	26	85	7	72	37	22	15	24	1.92
55864264--55864372	43	2.5	42	82	5	112	37	23	12	25	1.91
55874179--55874251	40	1.9	38	81	15	89	4	21	4	69	1.22
55875698--55875756	23	2.5	23	94	2	100	25	18	10	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55887112--55887152	22	1.9	21	85	5	55	51	19	2	26	1.59
55887413--55887442	4	7.5	4	100	0	60	50	23	0	26	1.50
55888623--55888675	3	17.7	3	100	0	106	33	0	0	66	0.92
55894367--55894425	28	2.1	28	100	0	118	50	0	3	45	1.18
55894367--55894435	28	2.7	26	86	8	88	47	0	2	49	1.16
55896078--55896204	57	2.2	57	85	2	175	28	14	7	49	1.70
55896079--55896269	57	3.2	57	75	12	168	28	16	6	48	1.71
55900827--55900901	31	2.5	30	85	8	91	32	6	9	52	1.60
55908869--55909709	422	2.0	422	95	0	1531	26	16	17	38	1.91
55913662--55913701	19	2.2	17	86	8	53	42	0	7	50	1.30
55916547--55916584	18	2.1	18	100	0	76	50	21	28	0	1.49
55917860--55917941	23	3.6	22	77	9	76	36	3	0	59	1.15
55930392--55930503	7	15.7	7	72	15	61	39	40	0	20	1.53
55930519--55930570	26	2.0	26	100	0	104	46	19	0	34	1.50
55930504--55930642	26	5.6	25	72	13	85	43	23	0	31	1.59
55930584--55930677	14	6.7	14	70	18	61	46	25	0	27	1.53
55930831--55930929	41	2.4	41	88	1	146	18	20	23	38	1.93
55930833--55930953	41	3.0	40	84	7	138	19	21	22	37	1.95
55934841--55934894	23	2.3	23	90	0	81	51	3	1	42	1.30
55934877--55934969	40	2.3	42	80	10	113	46	2	4	47	1.34
55934874--55934969	41	2.3	40	75	12	106	45	2	4	47	1.33
55938788--55938816	7	4.1	7	100	0	58	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55938835--55938944	3	36.0	3	69	3	58	60	1	8	29	1.35
55938832--55938880	25	2.0	25	87	0	71	67	4	6	22	1.30
55938835--55938944	16	6.8	16	71	18	68	60	1	8	29	1.35
55943955--55944155	93	2.1	95	81	8	250	23	32	19	23	1.97
55943955--55944168	47	4.5	49	74	14	189	23	32	20	23	1.98
55945915--55945988	35	2.1	36	94	2	132	50	4	13	32	1.60
55948390--55948433	20	2.0	22	87	12	65	68	13	9	9	1.40
55949085--55949243	86	1.8	86	80	10	191	31	5	2	60	1.33
55949087--55949220	3	45.3	3	65	21	52	32	5	2	60	1.31
55949340--55949373	17	2.0	17	94	0	59	26	0	5	67	1.13
55949365--55949533	26	6.9	25	76	13	156	34	7	5	53	1.51
55949364--55949553	26	7.6	25	75	14	155	34	7	5	52	1.53
55949363--55949533	51	3.5	48	80	11	163	34	7	5	53	1.51
55949410--55949553	51	2.8	51	76	15	138	34	9	6	50	1.59
55949696--55949740	20	2.3	20	82	14	58	24	4	2	68	1.19
55949734--55949767	8	4.6	7	92	3	50	32	0	2	64	1.08
55949732--55949777	16	2.9	15	87	12	58	30	2	2	65	1.16
55953990--55954045	27	2.1	27	100	0	112	32	19	28	19	1.97
55961575--55961963	160	2.4	161	87	5	540	29	16	18	35	1.93
55961825--55962052	89	2.6	89	88	4	327	30	18	17	32	1.95
55961648--55962245	249	2.4	250	90	2	905	29	17	17	34	1.94
55961899--55962279	162	2.3	162	84	6	480	29	17	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55962002--55962145	73	2.0	73	86	6	202	30	18	19	31	1.95
55962064--55962244	89	2.0	87	90	5	283	27	17	18	36	1.93
55962774--55962821	25	1.9	25	86	0	69	31	35	8	25	1.85
55963322--55963365	20	2.0	22	87	12	65	68	13	9	9	1.40
55964038--55964071	16	2.1	16	88	5	50	26	5	5	61	1.42
55964178--55964267	46	2.0	46	100	0	180	33	12	4	50	1.60
55964182--55964285	46	2.3	45	90	6	158	33	12	4	49	1.62
55964319--55964494	26	7.4	24	77	17	147	34	4	3	57	1.35
55964291--55964506	51	4.7	46	75	19	170	34	3	4	57	1.35
55964340--55964750	215	1.9	214	79	13	460	35	6	4	53	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310