genome.fa.s13.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  199  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64972712--64972736	13	1.9	13	100	0	50	16	32	40	12	1.84
64981051--64981111	22	2.7	22	80	12	70	62	0	4	32	1.17
64987951--64988030	27	2.9	27	79	1	79	36	21	16	26	1.94
64988154--64988205	27	2.0	27	92	3	88	17	21	23	38	1.93
64988154--64988218	27	2.4	27	87	2	87	18	18	23	40	1.92
64997533--64997558	13	2.0	13	100	0	52	69	0	15	15	1.20
65012770--65012804	18	1.9	19	88	11	56	17	34	22	25	1.96
65021074--65021133	25	2.4	26	76	15	63	60	1	1	36	1.17
65021950--65022010	30	2.1	30	84	3	79	49	9	8	32	1.66
65026866--65026906	20	2.0	20	95	0	73	41	7	9	41	1.66
65026945--65027043	49	2.0	49	96	0	180	28	7	15	49	1.70
65028404--65028527	47	2.7	45	80	12	144	23	29	17	29	1.97
65038310--65038335	13	2.0	13	100	0	52	38	7	23	30	1.83
65041803--65041883	41	2.0	41	95	0	144	41	7	14	35	1.74
65047711--65047864	70	2.2	70	90	0	245	20	22	20	36	1.95
65051590--65051673	38	2.2	38	84	0	114	22	21	25	30	1.98
65051666--65052250	43	13.6	43	94	0	1017	10	24	34	31	1.89
65053796--65053873	39	2.0	38	82	9	95	34	3	19	42	1.69
65055003--65055066	24	2.6	25	87	4	87	32	31	15	20	1.94
65055090--65055139	24	2.1	24	88	0	73	32	30	12	26	1.92
65055095--65055470	94	4.0	94	97	0	707	39	19	10	30	1.86
65068491--65068554	24	2.6	25	87	4	87	32	31	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65068578--65068627	24	2.1	24	88	0	73	32	30	12	26	1.92
65068583--65069052	94	5.0	94	98	0	904	39	19	10	30	1.85
65073783--65073840	19	3.1	19	87	2	82	55	6	0	37	1.27
65077837--65077875	19	1.9	19	85	10	51	2	25	2	69	1.14
65078872--65078906	18	1.9	18	88	0	52	48	2	17	31	1.61
65081295--65081345	23	2.2	24	89	10	79	72	1	0	25	0.95
65090004--65090033	14	2.2	14	94	5	53	13	0	0	86	0.57
65090002--65090086	36	2.4	34	70	3	80	14	10	1	74	1.14
65108355--65108413	5	11.8	5	72	13	50	74	0	3	22	0.96
65108352--65108414	16	4.4	13	86	9	63	76	0	3	20	0.93
65108370--65108409	16	2.6	16	96	4	73	70	0	5	25	1.08
65119785--65119824	13	3.2	12	85	7	53	7	5	2	85	0.83
65124836--65124969	40	3.3	40	87	4	189	26	19	22	31	1.98
65124836--65124986	40	3.8	39	84	6	160	27	19	22	31	1.98
65124836--65124986	80	1.9	80	86	2	214	27	19	22	31	1.98
65137117--65137156	20	2.0	20	95	0	71	32	10	12	45	1.75
65141046--65141074	13	2.1	14	93	6	51	41	0	20	37	1.53
65141873--65142045	40	4.3	40	85	2	215	24	17	25	32	1.97
65142035--65142088	28	1.9	28	84	0	72	27	12	27	31	1.93
65143793--65143841	25	2.0	25	91	0	80	20	18	16	44	1.86
65156096--65156177	26	3.2	26	96	0	146	36	24	7	31	1.83
65161420--65161485	22	3.2	22	65	20	61	33	13	10	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65161581--65161615	17	2.1	17	100	0	70	54	22	5	17	1.64
65166842--65166907	20	3.3	20	71	0	60	39	21	21	18	1.93
65166840--65166943	40	2.6	40	87	3	138	38	20	21	20	1.94
65166882--65167020	20	6.9	20	66	6	66	38	22	17	21	1.93
65166836--65166956	40	3.0	40	83	4	129	39	19	19	21	1.92
65166882--65166966	40	2.1	40	82	0	98	40	21	18	20	1.92
65168881--65168917	17	2.2	17	95	0	65	54	13	5	27	1.61
65169139--65169564	48	8.9	48	78	4	407	23	30	19	26	1.98
65169621--65169818	101	2.0	101	100	0	396	41	21	4	32	1.73
65172520--65172556	17	2.2	17	90	0	56	81	0	5	13	0.86
65173968--65174005	6	5.9	7	90	9	55	57	0	26	15	1.38
65175409--65175461	21	2.5	21	93	6	90	22	22	30	24	1.99
65177201--65177241	18	2.2	20	87	12	61	14	4	19	60	1.51
65179728--65179889	43	3.8	42	78	9	175	25	16	25	32	1.96
65180637--65180665	12	2.5	12	94	5	51	37	0	17	44	1.49
65183146--65183225	29	2.7	30	86	5	117	43	12	25	18	1.85
65183210--65183345	30	4.5	30	87	0	173	37	11	23	27	1.89
65183066--65183285	120	1.8	120	82	0	278	40	13	25	21	1.90
65195730--65195770	22	1.9	22	90	5	66	65	0	7	26	1.18
65196555--65196592	19	2.0	20	89	5	60	52	15	0	31	1.43
65197695--65197737	17	2.5	17	76	0	50	9	41	27	20	1.83
65203706--65203869	44	3.8	44	86	6	226	24	21	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65208115--65208150	16	2.2	16	90	0	54	36	0	2	61	1.11
65217163--65217260	7	13.6	7	72	9	54	20	0	31	47	1.50
65217223--65217271	21	2.2	22	89	7	73	22	2	30	44	1.64
65218907--65218976	34	2.0	36	81	10	83	62	8	10	18	1.51
65221886--65222012	49	2.6	49	85	5	168	26	28	16	28	1.97
65222032--65222195	48	3.5	48	84	3	233	23	29	18	28	1.98
65222032--65222246	94	2.3	93	86	6	292	22	28	19	29	1.98
65222898--65222936	20	2.0	20	85	10	53	35	20	0	43	1.52
65229982--65230096	29	4.0	28	80	6	106	30	15	26	27	1.96
65234493--65234607	29	4.0	29	79	2	117	27	13	28	29	1.95
65239171--65239208	3	12.7	3	100	0	76	65	0	0	34	0.93
65247753--65247838	26	3.3	26	93	0	154	34	24	6	33	1.82
65249280--65249365	43	2.0	43	95	0	154	22	38	12	26	1.90
65254810--65254917	26	4.2	26	93	0	189	36	24	7	32	1.83
65255888--65256005	59	2.0	59	98	0	227	31	2	23	42	1.68
65276657--65276696	17	2.3	18	84	16	57	47	0	15	37	1.45
65278002--65278219	40	5.5	40	88	2	307	24	27	23	24	2.00
65281292--65281352	24	2.5	24	86	5	79	21	16	29	32	1.95
65288523--65288562	17	2.3	18	84	16	57	47	0	15	37	1.45
65288907--65288951	22	2.0	22	82	0	54	42	8	17	31	1.80
65297798--65297836	20	1.9	21	89	5	62	38	0	20	41	1.53
65298114--65298228	42	2.7	43	83	1	124	25	17	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65303605--65303791	50	3.8	49	82	7	198	25	18	27	28	1.98
65305317--65305359	9	4.8	9	85	8	61	86	0	9	4	0.71
65305545--65305574	15	2.0	15	100	0	60	40	33	6	20	1.78
65306895--65307002	26	4.2	26	93	0	189	32	7	24	36	1.83
65308506--65308619	27	4.2	27	89	4	160	17	22	23	35	1.95
65310774--65311045	37	7.4	37	76	6	212	17	38	4	39	1.71
65310774--65311045	74	3.7	74	80	3	253	17	38	4	39	1.71
65323436--65323557	61	2.0	61	95	0	217	30	25	18	26	1.98
65329256--65329302	21	2.2	22	92	3	78	21	19	38	21	1.94
65335440--65335536	2	48.5	2	100	0	194	49	0	0	50	1.00
65337665--65337699	18	2.1	17	89	10	54	42	0	8	48	1.33
65338699--65338735	6	6.2	6	87	0	56	18	18	16	45	1.85
65342554--65342652	48	2.1	48	100	0	198	27	21	12	39	1.88
65345818--65345913	28	3.4	28	92	1	147	25	13	33	28	1.93
65357437--65357493	23	2.5	23	83	11	64	26	17	21	35	1.95
65359093--65359118	13	2.0	13	100	0	52	15	30	38	15	1.88
65362582--65362619	4	9.5	4	100	0	76	50	26	0	23	1.50
65363638--65363688	27	1.9	27	84	4	68	49	13	11	25	1.76
65366443--65366489	23	2.0	25	83	8	62	36	21	4	38	1.73
65371067--65371133	22	3.1	21	71	14	64	22	11	7	58	1.58
65374535--65374732	39	5.1	39	97	0	369	24	30	24	20	1.99
65380338--65380613	39	7.1	39	98	0	525	23	30	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65386158--65386224	33	2.0	33	100	0	134	34	20	17	26	1.96
65386241--65386373	39	3.4	39	93	1	223	24	31	25	18	1.98
65386271--65386469	39	5.1	39	91	2	226	25	30	23	20	1.98
65386241--65386469	78	2.9	77	83	5	250	25	31	23	19	1.98
65389296--65389388	41	2.2	43	86	5	127	34	24	15	25	1.94
65390320--65390353	16	2.1	17	88	5	52	17	11	5	64	1.45
65394300--65394350	23	2.4	22	84	15	72	45	7	3	43	1.51
65410153--65410314	86	1.9	87	82	11	208	29	18	24	27	1.98
65414418--65414550	67	2.0	66	89	5	207	18	33	9	37	1.83
65422870--65423092	47	4.8	46	75	17	203	22	19	28	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310