genome.fa.s13.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  130  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41940120--41940467	47	7.5	46	72	12	216	27	19	30	22	1.98
41940076--41940470	94	4.3	95	83	9	406	26	19	30	22	1.98
41940201--41940467	85	3.0	87	82	11	294	27	19	30	22	1.98
41940297--41940476	97	1.9	97	88	6	276	27	22	29	21	1.99
41940302--41940467	49	3.4	47	74	7	165	27	21	29	21	1.99
41941218--41941334	55	2.1	54	81	6	137	23	26	26	23	2.00
41942021--41942045	12	2.1	12	100	0	50	32	8	8	52	1.60
41944910--41944941	16	2.0	16	100	0	64	43	18	18	18	1.88
41946740--41946922	92	2.0	92	90	4	289	35	22	7	34	1.83
41961792--41961865	25	3.0	25	73	15	80	33	25	12	28	1.92
41964637--41964687	25	2.0	25	100	0	102	39	19	15	25	1.91
41966787--41966889	40	2.6	40	85	3	154	22	16	28	33	1.95
41966855--41966954	41	2.4	41	76	0	101	29	15	25	31	1.95
41972494--41972567	6	12.2	6	81	8	78	51	16	13	18	1.76
41972494--41972623	32	4.2	31	86	5	174	53	13	13	19	1.73
41985318--41985710	27	14.6	27	88	0	525	26	20	17	34	1.95
41985318--41985955	54	11.6	54	86	3	808	25	21	18	34	1.96
41985318--41985955	81	7.8	81	84	4	810	25	21	18	34	1.96
41985673--41985747	37	2.0	37	97	0	141	24	24	14	37	1.93
41985710--41985955	27	9.1	27	89	0	366	23	21	19	35	1.96
41986005--41986124	27	4.4	27	83	6	100	35	9	15	40	1.80
41991933--41992079	76	1.9	76	95	0	267	34	18	24	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41994013--41994959	40	23.7	40	98	0	1776	23	25	20	31	1.98
41996523--41996625	43	2.4	43	80	0	116	30	17	24	28	1.97
42016042--42016086	18	2.5	18	88	0	63	46	6	17	28	1.73
42016428--42016502	27	2.8	27	89	0	96	40	20	13	26	1.89
42026122--42026185	30	2.1	30	94	0	110	21	28	31	18	1.97
42051864--42052068	40	5.2	40	93	2	317	23	22	27	25	2.00
42053645--42053900	93	2.8	95	89	5	366	28	29	21	20	1.98
42053632--42053897	46	5.7	46	84	9	317	28	28	21	20	1.98
42056789--42056866	27	2.9	27	68	0	75	26	17	17	37	1.93
42057970--42058126	43	3.6	44	77	12	164	31	24	17	25	1.97
42060640--42060712	20	3.7	20	81	0	83	34	26	24	15	1.94
42060680--42060717	20	1.9	20	94	0	67	44	23	18	13	1.85
42067374--42067414	20	2.0	20	86	13	57	24	2	21	51	1.60
42067375--42067416	10	4.1	10	80	14	50	21	2	21	54	1.56
42069121--42069145	13	1.9	13	100	0	50	16	32	24	28	1.96
42069273--42069339	29	2.3	29	89	0	107	14	19	37	28	1.91
42091405--42091515	21	5.0	21	81	12	123	29	27	8	34	1.86
42091426--42091540	48	2.4	48	89	0	176	29	27	9	33	1.89
42091447--42091540	27	3.7	27	73	16	92	29	27	10	31	1.90
42099234--42099443	40	5.3	39	87	5	233	24	21	28	25	1.99
42099181--42099443	120	2.2	120	81	4	300	25	21	27	25	1.99
42099234--42099478	80	3.1	80	81	3	228	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42110115--42110167	23	2.4	22	76	20	56	9	18	1	69	1.25
42112115--42112220	53	2.0	54	96	1	196	37	10	24	27	1.88
42123728--42124955	613	2.0	612	97	0	2332	23	26	15	35	1.94
42134196--42134345	53	2.8	54	82	1	194	20	25	18	36	1.95
42140952--42141125	46	3.8	46	80	10	210	21	21	28	28	1.99
42140946--42141119	93	1.9	93	93	0	303	20	21	29	27	1.98
42153670--42153723	27	2.0	27	85	0	72	40	9	12	37	1.76
42153976--42154151	50	3.5	50	82	3	194	26	18	25	30	1.98
42159825--42160056	49	4.7	49	82	3	277	25	18	26	29	1.98
42159827--42160070	100	2.4	99	82	8	239	26	18	25	29	1.98
42164646--42164678	17	1.9	17	93	0	57	54	3	18	24	1.57
42166789--42166826	12	3.2	12	81	11	51	60	2	7	28	1.38
42169868--42169896	11	2.5	12	94	5	51	72	13	0	13	1.13
42170813--42170873	25	2.4	25	75	5	59	60	3	3	32	1.29
42174648--42174783	40	3.4	40	90	5	206	23	28	22	25	1.99
42179507--42180313	402	2.0	403	93	0	1391	27	15	19	38	1.91
42183467--42183521	24	2.3	24	78	9	60	23	23	18	34	1.96
42189766--42189825	23	2.6	23	94	0	102	28	33	26	11	1.91
42202194--42202661	48	9.6	48	77	3	418	23	27	19	28	1.98
42202194--42202666	146	3.2	146	89	0	732	23	28	19	28	1.98
42207181--42207503	48	6.7	48	79	2	335	28	19	27	24	1.99
42207181--42207452	95	2.9	95	96	0	490	28	18	27	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42209970--42210008	21	1.9	21	94	5	71	20	30	38	10	1.86
42211233--42211405	46	3.7	45	80	11	165	23	30	19	27	1.98
42214731--42214808	16	5.4	16	64	22	55	38	2	16	42	1.62
42214730--42214819	28	3.2	28	96	1	164	41	3	16	38	1.65
42216597--42216623	14	1.9	14	100	0	54	62	0	0	37	0.95
42216849--42216900	25	2.0	25	82	17	63	32	1	1	63	1.16
42217145--42217172	7	4.0	7	100	0	56	71	0	0	28	0.86
42218195--42218224	16	1.9	15	93	6	51	10	30	0	60	1.30
42220399--42220480	41	2.0	41	100	0	164	21	36	7	34	1.82
42221029--42221120	39	2.4	39	81	0	112	21	27	10	40	1.87
42225402--42225457	28	2.0	28	100	0	112	35	28	17	17	1.93
42231235--42231272	19	2.0	20	85	15	53	39	23	0	36	1.55
42231500--42231621	46	2.7	46	93	0	199	29	27	21	21	1.98
42231498--42231640	46	3.1	45	84	6	137	29	27	20	21	1.98
42242471--42242532	25	2.4	25	78	2	70	43	3	14	38	1.62
42249240--42249277	19	2.0	20	85	15	53	39	23	0	36	1.55
42249505--42249668	46	3.6	45	76	11	170	31	28	18	22	1.97
42249506--42249674	93	1.8	93	89	2	268	30	28	18	21	1.97
42249500--42249685	46	4.0	45	70	17	114	30	29	17	22	1.97
42250097--42250156	30	2.0	30	83	6	77	31	25	8	35	1.85
42254105--42254256	60	2.5	63	79	9	165	26	23	21	29	1.99
42254246--42254291	20	2.3	20	82	14	60	28	28	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42258622--42258850	40	5.7	40	93	0	395	21	28	20	29	1.98
42272579--42272720	30	4.8	29	73	11	126	37	23	16	21	1.94
42272800--42272913	30	3.7	31	78	13	121	46	24	10	18	1.80
42272827--42272940	29	3.8	30	73	13	90	45	26	10	17	1.81
42272811--42272940	61	2.1	61	88	0	188	46	25	10	17	1.81
42272811--42272914	32	3.3	32	76	12	117	47	25	9	17	1.78
42279830--42279854	8	3.1	8	100	0	50	36	28	24	12	1.91
42280091--42280269	29	6.2	29	92	2	270	25	16	31	27	1.96
42292498--42292562	32	2.0	32	96	0	121	23	16	13	46	1.83
42296023--42296251	40	5.7	40	91	0	377	29	20	28	20	1.98
42306137--42306321	40	4.6	39	81	5	194	24	22	28	25	1.99
42306137--42306319	79	2.3	81	83	7	223	24	22	27	25	2.00
42306190--42306354	79	2.1	79	83	6	201	26	20	27	26	1.99
42309700--42310017	159	2.0	159	96	0	591	25	20	23	30	1.98
42326257--42326305	24	2.0	24	84	0	62	46	22	22	8	1.77
42326528--42326690	29	5.7	28	82	8	170	28	15	30	25	1.96
42328422--42328495	29	2.6	29	86	0	103	28	18	27	25	1.98
42331939--42332116	27	6.6	27	83	3	205	26	15	28	29	1.96
42331940--42332095	82	1.9	81	88	3	233	26	15	28	29	1.96
42331936--42332116	82	2.2	81	83	2	229	27	15	27	29	1.96
42345579--42346371	46	17.6	45	87	8	742	28	30	8	32	1.86
42345579--42345759	47	3.9	47	90	1	265	28	30	7	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42345579--42345759	93	1.9	94	87	3	267	28	30	7	32	1.85
42345733--42345785	26	2.0	26	100	0	106	28	37	7	26	1.83
42345686--42345831	73	2.0	72	97	1	274	29	31	8	30	1.86
42345759--42346371	46	13.3	46	99	0	1190	28	30	8	32	1.87
42350094--42350758	220	3.0	223	96	1	1239	24	10	30	34	1.89
42353220--42353292	26	2.6	28	82	6	87	28	13	26	31	1.94
42353190--42353317	28	4.7	27	78	7	116	28	14	27	29	1.95
42359941--42360111	82	2.1	82	93	2	290	36	3	21	39	1.70
42360378--42360486	57	1.9	57	96	0	200	33	15	19	31	1.93
42360685--42360759	26	2.8	27	79	4	80	28	17	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310