genome.fa.s13.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  121  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38857854--38857899	13	3.6	13	77	16	60	50	17	17	15	1.79
38857842--38857940	25	3.7	25	91	8	144	52	16	14	17	1.75
38857828--38857940	31	3.9	29	81	16	128	52	15	14	17	1.75
38858345--38858780	27	16.2	27	81	5	438	26	18	18	36	1.93
38858372--38858773	54	7.5	54	88	1	520	26	18	18	37	1.93
38858762--38858837	27	2.8	27	82	4	91	28	7	23	39	1.83
38868696--38868957	39	6.7	40	87	7	337	25	22	27	24	2.00
38881050--38881127	29	2.7	28	84	11	104	25	14	30	29	1.94
38881080--38881581	174	2.9	174	97	0	941	29	13	24	31	1.94
38889371--38889448	29	2.7	28	84	11	104	25	14	30	29	1.94
38889401--38889728	174	1.9	174	94	0	575	29	14	25	30	1.95
38891974--38892056	39	2.1	39	86	0	121	44	14	10	30	1.79
38895947--38896287	40	8.5	41	89	4	511	21	23	26	27	1.99
38895947--38896287	120	2.8	120	95	1	596	21	23	26	27	1.99
38900366--38900528	82	2.0	82	91	0	263	36	8	20	34	1.83
38901137--38901312	46	3.8	47	76	12	184	19	19	29	31	1.97
38901134--38901305	93	1.8	93	90	2	274	20	19	29	30	1.97
38907229--38907446	40	5.5	40	86	5	309	22	22	27	27	1.99
38912808--38913060	40	6.3	40	96	0	445	25	20	26	27	1.99
38912756--38913060	120	2.5	120	91	4	476	26	20	26	26	1.99
38917582--38917607	10	2.6	10	100	0	52	26	30	7	34	1.85
38920445--38920509	29	2.3	29	83	2	78	29	24	3	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38922220--38922280	24	2.5	24	86	5	79	19	16	29	34	1.94
38935431--38935464	16	2.1	17	88	5	52	47	14	17	20	1.83
38943075--38943099	13	1.9	13	100	0	50	24	24	32	20	1.98
38945074--38945250	40	4.5	40	86	4	209	25	27	24	22	2.00
38953132--38953281	40	3.8	40	84	1	185	26	30	22	21	1.99
38956640--38956727	45	2.0	45	93	0	149	23	18	21	36	1.95
38961248--38961277	14	2.1	14	100	0	60	43	13	20	23	1.86
38961880--38961927	24	2.0	24	100	0	96	41	25	20	12	1.87
38965724--38965900	40	4.4	40	87	2	241	24	24	25	24	2.00
38965720--38965900	80	2.3	80	88	2	267	24	24	25	25	2.00
38973570--38974208	320	2.0	319	98	0	1233	30	12	22	34	1.91
38974141--38974321	40	4.6	40	88	2	249	24	22	25	27	2.00
38979025--38979089	20	3.3	19	75	10	60	38	16	32	12	1.86
38980258--38980318	30	2.0	30	87	0	86	39	6	22	31	1.80
38980973--38981231	68	3.9	64	77	10	222	30	16	28	23	1.96
38985767--38985951	79	2.3	81	84	7	236	24	22	27	25	2.00
38985768--38985951	40	4.6	40	83	9	216	24	22	27	25	2.00
38985820--38985974	79	2.0	79	84	7	208	25	21	27	25	1.99
38993989--38994048	11	6.0	10	75	21	63	41	0	0	58	0.98
38993989--38994047	31	1.9	30	83	10	75	42	0	0	57	0.98
38993991--38994048	19	2.9	19	80	16	73	41	0	0	58	0.98
39004009--39004146	40	3.5	40	88	4	183	26	28	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39016956--39016999	22	2.0	21	83	16	54	31	18	13	36	1.90
39018995--39019037	22	1.9	23	81	13	54	46	9	30	13	1.75
39026083--39026318	40	5.9	40	90	0	337	25	28	22	23	1.99
39026626--39026704	29	2.7	29	86	5	106	27	32	15	24	1.95
39026692--39026782	46	2.0	46	100	0	182	28	35	13	23	1.92
39028081--39028922	47	17.9	47	98	0	1576	29	30	8	31	1.87
39034728--39035071	174	2.0	174	90	5	545	29	15	23	31	1.95
39034999--39035086	40	2.2	40	93	0	149	25	20	27	27	1.99
39042990--39043142	40	3.8	40	89	2	220	23	29	24	22	1.99
39043597--39043675	39	2.0	39	97	0	149	45	13	10	30	1.77
39045480--39045650	86	2.0	86	97	0	324	26	16	17	39	1.91
39046958--39047011	26	2.1	26	85	0	72	27	12	9	50	1.71
39049380--39049649	30	9.1	30	71	12	171	39	12	23	24	1.89
39049380--39049649	89	3.0	89	89	3	391	39	12	23	24	1.89
39049380--39049652	60	4.6	60	77	7	209	39	12	23	24	1.89
39056111--39056175	22	3.0	22	77	8	69	30	23	24	21	1.99
39056283--39056391	41	2.7	41	89	0	164	28	29	19	22	1.98
39056649--39056989	27	12.6	27	79	6	255	31	11	18	37	1.87
39059915--39059978	22	2.9	21	73	13	58	32	21	23	21	1.98
39060121--39060199	40	2.0	41	89	2	124	26	27	21	24	1.99
39060468--39060597	55	2.4	54	79	2	145	30	10	16	43	1.80
39060437--39060825	27	14.4	27	72	6	151	31	10	19	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39061280--39061548	27	9.9	27	75	8	109	30	10	19	39	1.85
39061381--39061555	54	3.2	54	81	5	140	30	10	20	38	1.87
39061396--39061548	81	1.9	81	83	2	200	28	9	23	38	1.86
39061531--39061636	27	4.0	26	84	6	131	33	9	17	39	1.82
39061420--39061579	54	3.0	53	82	7	196	28	9	22	39	1.85
39061380--39061580	81	2.5	81	80	3	199	30	9	20	38	1.85
39061535--39061638	54	1.9	54	90	0	163	33	10	15	40	1.82
39061562--39061646	27	3.2	26	88	3	116	31	9	16	42	1.80
39064897--39065017	40	3.0	41	82	2	154	27	28	20	23	1.99
39065315--39065574	27	9.6	27	75	5	134	30	9	18	41	1.82
39065394--39065548	81	1.9	81	83	0	202	31	9	19	39	1.84
39065315--39065527	54	3.9	54	75	5	171	30	9	18	41	1.83
39065394--39065601	81	2.6	81	78	2	186	32	10	19	37	1.86
39065230--39065590	27	13.3	27	75	2	125	32	10	17	38	1.85
39065620--39065699	27	3.0	26	85	3	97	30	22	16	31	1.96
39069171--39069513	27	12.7	28	77	6	201	30	10	19	39	1.86
39069232--39069461	80	2.8	80	78	1	208	29	8	19	43	1.80
39069279--39069488	107	2.0	107	79	5	228	28	10	20	40	1.85
39069537--39069627	27	3.4	27	78	0	92	30	18	15	35	1.92
39069699--39069733	18	2.0	18	88	5	54	20	31	25	22	1.98
39073420--39073506	24	3.6	24	90	3	122	34	34	13	17	1.89
39075715--39075792	39	2.0	39	97	0	147	38	16	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39080677--39080723	24	2.0	24	91	0	76	34	29	12	23	1.92
39080687--39080749	24	2.6	24	89	0	90	31	34	14	19	1.91
39084018--39084072	27	2.1	27	82	3	67	14	14	21	49	1.79
39084330--39084427	29	3.4	28	75	12	92	24	33	14	27	1.94
39084332--39084445	59	2.0	57	81	6	131	26	31	13	28	1.93
39086336--39086573	50	4.7	50	77	9	259	28	25	18	27	1.98
39086397--39086578	101	1.8	101	87	2	276	29	25	17	27	1.97
39086336--39086629	50	5.8	50	76	6	254	29	25	17	27	1.97
39086339--39086627	151	1.9	150	85	5	395	30	25	17	26	1.97
39088595--39088647	25	2.1	25	100	0	106	52	16	7	22	1.69
39088663--39088692	15	1.9	16	93	6	53	60	30	0	10	1.30
39089912--39090089	43	4.2	42	77	10	155	30	27	17	23	1.97
39091439--39091532	27	3.5	27	81	11	111	31	19	22	26	1.97
39091538--39091754	27	8.0	26	78	12	195	41	20	7	30	1.81
39091560--39091754	55	3.6	55	92	2	304	40	21	7	30	1.81
39091783--39091855	27	2.7	27	80	4	67	30	23	23	23	1.99
39097250--39097356	27	4.0	27	85	0	133	32	18	21	27	1.97
39097342--39097435	27	3.5	27	85	2	100	42	19	8	29	1.80
39097342--39097519	27	6.6	27	74	5	99	41	21	7	30	1.80
39097504--39097557	27	2.0	27	96	0	99	37	16	18	27	1.93
39097511--39097583	27	2.7	27	84	0	83	32	21	21	23	1.98
39100393--39100549	43	3.7	44	74	12	130	26	16	24	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39105514--39105604	40	2.3	40	73	7	51	26	23	26	24	2.00
39105559--39105655	49	2.0	49	97	0	185	28	21	25	23	1.99
39105618--39106107	40	12.3	40	97	0	894	24	20	27	27	1.99
39113211--39113395	40	4.6	41	81	7	213	24	22	27	24	2.00
39113264--39113430	79	2.1	79	82	6	196	26	20	27	25	1.99
39117251--39117679	86	5.1	85	84	4	469	32	13	10	43	1.78
39117297--39117679	166	2.3	168	85	6	472	31	13	10	44	1.79
39121363--39121442	27	3.0	27	83	7	99	37	22	11	28	1.89
39121369--39121457	27	3.3	25	81	12	81	40	22	8	28	1.84
39121363--39121494	54	2.5	53	79	6	124	38	21	9	31	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310