Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  42  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12157212--12157253
12
3.7
12
78
12
52
33
0
0
66
0.92
12158371--12158414
22
2.0
22
82
8
54
34
11
29
25
1.91
12162302--12162436
54
2.5
54
88
0
198
27
17
25
29
1.98
12164427--12164454
13
2.2
13
100
0
56
17
28
39
14
1.89
12165954--12166931
489
2.0
488
99
0
1938
37
12
22
27
1.90
12178423--12178468
20
2.3
20
92
0
74
34
17
26
21
1.95
12178423--12178469
10
4.7
10
83
0
58
34
17
27
21
1.95
12181865--12182053
54
3.5
54
94
0
324
25
20
25
28
1.99
12193712--12193912
102
2.0
102
96
0
375
25
17
26
29
1.98
12194024--12194353
161
2.1
161
99
0
653
27
18
23
30
1.97
12215183--12215238
24
2.4
23
79
5
58
60
8
1
28
1.37
12215265--12215316
22
2.4
22
86
0
68
44
0
32
23
1.54
12215279--12215334
22
2.5
22
82
5
60
46
0
32
21
1.52
12215672--12215704
16
2.1
16
88
11
50
45
6
3
45
1.43
12217494--12217541
15
3.1
15
76
5
51
37
0
4
58
1.18
12220341--12220381
16
2.5
17
88
4
57
19
24
31
24
1.98
12221883--12221940
26
2.2
26
84
0
71
17
22
22
37
1.93
12222043--12222104
24
2.6
24
78
12
74
20
22
16
40
1.91
12229532--12229558
7
3.9
7
100
0
54
88
0
0
11
0.50
12230785--12230837
27
2.0
27
96
0
97
33
7
20
37
1.81
12231402--12231443
21
2.0
21
100
0
84
42
19
19
19
1.89
12234511--12234684
44
4.0
44
87
2
251
23
21
28
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12243954--12244029
25
3.0
25
77
7
75
71
1
25
2
1.07
12243939--12244031
44
2.1
44
80
4
116
70
3
21
4
1.18
12249944--12249979
17
2.1
17
100
0
72
58
16
11
13
1.63
12253380--12253408
14
2.0
15
93
6
51
20
6
24
48
1.74
12257038--12257214
94
1.9
95
90
1
284
56
15
14
14
1.68
12262385--12262434
21
2.3
22
79
6
57
30
44
16
10
1.80
12265791--12266310
128
4.1
126
85
3
672
29
17
15
36
1.91
12266520--12266552
15
2.3
15
89
5
50
63
24
0
12
1.28
12266856--12266921
25
2.7
23
79
9
69
54
25
3
16
1.56
12267553--12267592
12
3.3
12
89
0
53
62
7
7
22
1.47
12271075--12271119
22
2.2
20
84
8
54
8
24
2
64
1.34
12271199--12271246
22
2.1
23
84
3
62
39
16
8
35
1.79
12272192--12272341
38
3.9
38
94
0
246
38
30
20
10
1.86
12273970--12274004
11
3.3
11
88
8
54
22
0
0
77
0.78
12276857--12276983
45
2.8
45
77
8
132
44
10
21
24
1.83
12283905--12283962
24
2.4
25
82
2
73
29
24
10
36
1.88
12295820--12295852
3
11.0
3
93
0
57
33
3
0
63
1.10
12296788--12296821
6
5.7
6
89
0
50
20
20
11
47
1.81
12300334--12300404
25
2.8
26
77
12
83
33
19
9
36
1.85
12300533--12300557
12
2.1
12
100
0
50
16
24
0
60
1.36
12301955--12302048
39
2.4
40
82
12
122
27
28
14
28
1.96
12311929--12311964
3
12.0
3
100
0
72
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12313126--12313219
40
2.4
38
79
8
102
15
22
29
31
1.95
12313352--12314048
348
2.0
348
99
0
1385
33
7
20
38
1.80
12322602--12322681
28
2.8
29
86
3
117
16
3
32
47
1.64
12322888--12322939
21
2.5
21
74
0
59
13
28
26
30
1.94
12332034--12332072
18
2.2
18
90
0
60
64
2
2
30
1.21
12332207--12332269
30
2.1
30
82
8
76
34
11
3
50
1.54
12332346--12332404
29
2.0
30
86
6
84
59
0
5
35
1.20
12336798--12336837
19
2.2
17
86
8
53
62
0
2
35
1.09
12338504--12338557
23
2.3
24
81
15
69
20
11
24
44
1.83
12343575--12343682
26
4.2
26
93
0
189
36
24
7
32
1.83
12346649--12346702
15
3.5
15
79
2
63
20
11
24
44
1.83
12353685--12353748
24
2.7
23
77
17
69
6
4
14
75
1.17
12353687--12353745
12
4.8
12
74
2
55
5
5
15
74
1.17
12353714--12353754
21
2.0
21
85
0
55
2
7
17
73
1.17
12354541--12354582
15
2.7
16
85
3
59
40
0
4
54
1.21
12355894--12355951
30
1.9
30
96
0
107
34
15
17
32
1.91
12360801--12360846
23
2.0
23
100
0
92
26
8
30
34
1.86
12366759--12366785
9
3.0
9
100
0
54
44
0
11
44
1.39
12367073--12367117
21
2.1
21
84
8
56
31
4
0
64
1.13
12367813--12367851
19
2.1
19
90
4
62
41
10
7
41
1.68
12373796--12373833
20
1.9
20
84
10
51
39
2
13
44
1.57
12377295--12377325
15
2.1
15
93
0
53
29
41
0
29
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12391115--12391165
26
2.0
26
84
0
66
37
5
13
43
1.69
12395499--12395549
26
2.0
26
84
0
66
37
5
13
43
1.69
12400919--12400955
18
2.1
18
89
0
56
51
8
10
29
1.65
12401089--12401148
30
2.0
29
84
9
77
26
31
0
41
1.56
12404492--12404717
42
5.2
42
75
8
150
29
23
18
29
1.97
12404461--12404721
85
3.0
84
77
8
265
29
24
18
28
1.98
12404647--12404852
48
4.3
48
81
3
209
25
23
19
31
1.98
12404823--12404907
17
5.4
17
63
21
58
24
18
17
38
1.92
12404819--12404914
31
3.1
31
90
0
165
25
19
17
37
1.94
12408436--12408613
27
6.6
27
84
3
205
29
28
15
26
1.96
12408457--12408612
82
1.9
81
88
3
233
29
28
15
26
1.96
12421211--12421249
20
2.0
20
84
0
51
46
10
0
43
1.37
12428055--12428087
13
2.5
13
90
0
57
75
6
9
9
1.18
12428089--12428127
20
2.0
19
85
5
51
66
5
2
25
1.25
12442150--12442269
42
2.9
42
73
2
125
30
14
24
31
1.94
12456945--12456983
20
2.0
20
89
0
60
46
0
2
51
1.14
12481152--12481268
43
2.7
43
82
1
137
29
16
24
29
1.96
12481359--12481397
20
2.0
20
94
0
69
30
2
30
35
1.71
12483992--12484072
32
2.5
32
84
4
101
29
2
18
49
1.61
12485059--12485107
25
2.1
25
81
11
59
34
6
10
48
1.62
12485154--12485199
12
3.8
12
82
5
65
15
4
0
80
0.86
12485144--12485184
13
3.2
13
78
0
55
19
9
0
70
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12485144--12485196
25
2.1
26
96
3
99
18
7
0
73
1.06
12485805--12485842
16
2.4
16
86
4
51
63
0
5
31
1.17
12485796--12485849
20
2.5
22
82
11
60
62
1
3
31
1.23
12486904--12486953
11
4.7
11
78
9
59
30
30
0
40
1.57
12486896--12486953
20
2.7
21
81
10
64
31
27
0
41
1.56
12489639--12490253
116
5.3
116
98
0
1158
39
3
9
47
1.54
12493197--12493733
126
4.3
126
91
1
837
27
21
17
33
1.96
12493192--12493733
250
2.2
252
90
1
838
27
21
17
33
1.96
12493820--12494025
96
2.1
96
82
7
256
41
16
1
39
1.60
12494015--12494056
16
2.6
16
77
11
50
54
23
0
21
1.44
12494786--12495777
151
6.5
149
87
6
1255
59
7
5
26
1.47
12494949--12495017
31
2.2
31
81
0
84
69
4
5
20
1.27
12495250--12495304
17
3.4
17
70
10
51
69
3
1
25
1.15
12495250--12495329
32
2.5
31
72
18
76
71
5
1
22
1.13
12494800--12495775
312
3.2
305
86
6
1347
59
7
5
26
1.48
12495415--12495469
29
1.9
29
88
3
76
65
3
3
27
1.26
12495409--12495479
13
5.3
13
71
17
56
70
2
2
23
1.14
12494786--12495777
463
2.2
455
86
6
1403
59
7
5
26
1.47
12495566--12495620
29
1.9
29
88
3
76
65
3
3
27
1.26
12495560--12495630
13
5.3
13
71
17
56
70
2
2
23
1.14
12502108--12502143
18
1.9
19
94
5
65
0
30
0
69
0.89
12502319--12502352
17
2.0
17
100
0
68
64
11
5
17
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12502911--12502980
27
2.6
27
81
0
86
17
31
25
25
1.97
12503002--12503037
17
2.1
18
89
5
56
19
8
8
63
1.47
12504045--12504086
21
2.0
22
85
4
59
28
2
9
59
1.41
12504114--12504163
26
2.0
25
84
4
64
34
6
8
52
1.55
12524043--12524252
40
5.3
40
88
1
271
32
27
20
19
1.96
12527915--12527969
28
2.0
28
96
0
101
29
25
25
20
1.99
12531978--12532165
40
4.7
40
87
0
270
31
28
20
19
1.97
12543426--12543466
20
2.0
20
95
0
73
46
31
4
17
1.69
12550421--12550484
33
1.9
33
96
0
119
50
9
25
15
1.74
12551605--12551646
22
2.0
21
86
9
59
26
9
9
54
1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310