genome.fa.s13.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  160  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52444277--52444417	33	4.2	33	86	2	167	40	35	9	14	1.78
52447887--52448088	38	5.3	38	86	2	262	31	24	20	23	1.98
52453268--52453469	38	5.3	38	85	2	244	32	24	19	23	1.97
52453589--52453862	138	2.0	138	97	0	512	35	19	12	32	1.89
52458757--52458951	38	5.1	38	86	3	259	30	24	21	23	1.99
52464362--52464407	23	2.0	23	86	0	65	47	19	15	17	1.82
52464681--52464740	30	2.0	30	93	0	102	31	16	15	36	1.90
52464683--52464748	30	2.2	30	88	0	96	36	16	13	33	1.88
52466444--52466634	43	4.4	43	91	3	271	25	15	24	34	1.95
52466488--52466685	86	2.3	86	83	4	231	28	16	24	30	1.97
52469582--52469747	49	3.6	45	80	7	172	28	28	18	24	1.98
52469582--52469889	48	6.5	49	80	8	221	25	27	19	27	1.99
52469582--52469793	93	2.2	96	84	4	263	27	27	19	25	1.99
52470467--52470517	20	2.7	18	82	14	59	37	21	0	41	1.54
52471073--52471108	17	2.1	17	94	0	63	36	27	0	36	1.57
52472386--52472430	14	3.0	15	83	6	56	60	15	15	8	1.59
52473501--52473636	40	3.4	40	86	2	184	33	17	21	27	1.96
52473509--52473667	80	2.0	80	80	7	180	32	18	20	28	1.97
52473842--52473922	40	2.0	40	80	4	92	30	19	19	29	1.97
52474097--52474155	27	2.1	28	93	3	102	72	3	5	18	1.17
52475826--52475895	28	2.5	28	88	9	99	27	14	27	31	1.95
52495027--52495249	40	5.6	40	85	3	236	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52495181--52495258	40	1.9	41	82	10	97	26	28	21	23	1.99
52500007--52500031	13	1.9	13	100	0	50	76	16	0	8	1.02
52502905--52503088	101	1.8	99	82	2	233	27	27	18	26	1.98
52508632--52508754	50	2.5	49	86	1	156	30	26	17	26	1.97
52508632--52508815	101	1.8	98	83	6	244	29	26	17	26	1.98
52514338--52514513	50	3.5	48	83	4	199	30	27	17	25	1.97
52514338--52514521	101	1.8	99	85	2	260	29	28	17	25	1.97
52519934--52519967	11	3.1	11	100	0	68	35	20	0	44	1.52
52535646--52535727	34	2.4	34	78	8	87	24	25	23	26	2.00
52543494--52543623	50	2.6	49	90	1	188	24	16	28	30	1.97
52546422--52546503	28	2.9	28	96	0	146	46	24	10	18	1.81
52553692--52553770	28	2.9	26	80	10	86	46	20	8	24	1.78
52553702--52553780	28	2.8	28	90	0	113	48	20	10	21	1.79
52559810--52559848	18	2.2	18	90	0	60	58	12	5	23	1.54
52559828--52559904	31	2.5	31	89	0	109	50	14	14	20	1.77
52559820--52559881	18	3.4	19	76	12	67	51	14	12	20	1.75
52560336--52560440	27	3.9	27	86	5	149	24	20	18	36	1.95
52560336--52560448	54	2.1	54	89	0	172	24	19	18	37	1.94
52560311--52560478	27	6.2	27	82	4	142	26	19	18	36	1.94
52560352--52560478	54	2.4	54	85	5	159	24	14	21	39	1.91
52560376--52560531	27	5.8	27	76	7	102	25	10	21	42	1.85
52560433--52560826	27	14.6	27	78	4	177	32	8	21	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52560522--52560680	81	2.0	81	84	2	212	39	6	20	33	1.79
52560522--52560707	81	2.3	81	81	3	196	38	7	20	33	1.81
52570103--52570178	23	3.3	23	92	3	127	22	28	34	14	1.93
52575006--52575348	40	8.6	40	91	4	484	25	21	27	25	1.99
52576332--52576408	38	2.0	38	97	0	145	28	24	15	31	1.96
52583137--52583321	79	2.3	81	81	7	209	24	21	27	25	1.99
52583140--52583321	40	4.6	40	82	6	201	25	20	28	25	1.99
52583190--52583354	79	2.1	79	80	6	183	26	20	27	26	1.99
52583917--52585396	768	1.9	768	89	1	2326	33	14	22	29	1.93
52589819--52589860	11	4.1	10	82	11	50	16	0	28	54	1.42
52591801--52592064	47	5.6	44	77	14	194	28	17	29	24	1.97
52591799--52592064	94	2.8	92	83	6	295	28	18	29	24	1.98
52593539--52593662	55	2.2	56	85	2	162	24	29	25	21	1.99
52599087--52599351	40	6.7	40	89	4	358	25	27	21	24	2.00
52599087--52599351	119	2.2	121	86	4	369	25	27	21	24	2.00
52600902--52601026	61	2.0	61	98	0	241	43	5	16	34	1.72
52601301--52601433	45	3.0	45	95	0	230	23	22	27	27	1.99
52610342--52610464	55	2.2	56	88	2	176	26	12	28	33	1.92
52610342--52610464	28	4.4	28	90	2	176	26	12	28	33	1.92
52610367--52610477	28	4.0	27	90	3	116	28	11	26	33	1.91
52612932--52613023	27	3.4	27	80	7	105	16	22	22	38	1.93
52620756--52620865	27	4.1	26	81	9	123	16	23	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52631261--52631438	27	6.6	27	84	3	205	29	28	15	26	1.96
52631282--52631437	82	1.9	81	88	3	233	29	28	15	26	1.96
52631261--52631450	82	2.3	83	78	12	221	30	27	14	27	1.95
52635439--52635488	26	1.9	26	83	0	64	48	14	2	36	1.55
52637020--52637618	300	2.0	299	96	0	1108	30	20	18	30	1.97
52637868--52637917	26	1.9	26	91	0	82	38	14	4	44	1.63
52642110--52642149	20	2.0	20	100	0	80	60	5	30	5	1.40
52646892--52646942	26	2.0	26	88	7	77	39	9	3	47	1.55
52655002--52655033	5	6.6	5	92	7	57	18	0	0	81	0.70
52655002--52655032	9	3.3	9	91	8	53	19	0	0	80	0.71
52657702--52657824	67	1.9	63	85	6	165	52	8	6	32	1.59
52657702--52657852	71	2.3	64	80	11	162	51	9	5	33	1.58
52658127--52658228	7	15.1	7	69	14	54	61	2	1	33	1.22
52658142--52658213	23	3.3	22	77	15	69	65	4	2	27	1.25
52658161--52658280	49	2.4	51	76	16	128	60	2	1	35	1.20
52658208--52658320	15	7.3	15	66	16	61	58	0	1	38	1.15
52658240--52658277	19	2.0	19	94	0	67	65	0	0	34	0.93
52658246--52658307	29	2.1	28	88	8	88	62	0	0	37	0.95
52659749--52660104	90	4.0	90	86	1	466	25	25	17	31	1.97
52659831--52660104	45	6.1	45	70	14	181	25	25	16	32	1.96
52665390--52665459	35	2.0	34	91	2	113	28	25	20	24	1.98
52667953--52668134	40	4.6	40	95	2	314	23	23	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52687628--52687729	40	2.6	40	81	10	120	26	21	26	25	2.00
52694333--52694364	15	2.1	15	94	0	55	75	0	3	21	0.95
52697854--52698374	261	2.0	261	92	0	871	32	12	19	35	1.89
52699584--52699633	26	1.9	26	95	0	91	38	14	2	46	1.56
52701091--52701152	19	3.2	19	90	4	97	35	9	17	37	1.83
52705908--52706347	225	2.0	225	95	0	790	27	22	19	30	1.98
52706995--52707051	7	7.9	7	77	13	53	82	0	12	5	0.82
52706992--52707049	12	4.8	12	76	19	50	82	0	12	5	0.82
52706992--52707049	18	3.2	18	79	13	66	82	0	12	5	0.82
52707003--52707051	23	2.1	23	85	7	64	83	0	12	4	0.77
52707003--52707051	12	4.1	12	76	7	55	83	0	12	4	0.77
52708009--52708232	43	5.3	42	66	19	144	30	22	20	26	1.98
52708000--52708273	84	3.3	84	94	1	469	29	22	21	26	1.99
52708136--52708398	125	2.1	125	92	0	427	30	21	22	25	1.99
52709541--52709678	41	3.3	41	68	15	113	31	23	23	21	1.99
52709461--52709688	84	2.7	84	87	4	307	31	23	23	22	1.99
52709695--52709968	87	3.1	87	69	15	229	31	19	21	27	1.98
52710556--52710616	19	3.1	19	95	4	104	37	9	16	36	1.82
52712811--52712861	26	2.0	26	88	7	77	39	13	1	45	1.55
52715267--52715318	26	2.0	26	96	0	95	40	11	5	42	1.65
52717435--52717488	26	2.1	26	92	0	90	42	9	5	42	1.60
52719553--52719602	26	1.9	26	95	0	91	38	14	2	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52719863--52720459	299	2.0	299	94	0	1059	35	15	11	37	1.84
52735253--52735326	9	7.6	9	82	11	67	35	0	21	43	1.53
52735269--52735318	11	4.7	11	85	9	77	32	0	20	48	1.50
52735253--52735326	20	3.7	20	84	10	98	35	0	21	43	1.53
52735260--52735318	31	1.9	31	100	0	118	33	0	20	45	1.51
52739526--52739559	16	2.1	16	94	0	59	67	0	0	32	0.91
52754361--52754471	42	2.6	41	76	17	118	24	17	29	28	1.97
52756131--52756300	40	4.3	40	90	0	225	26	28	20	24	1.99
52756167--52756353	80	2.3	79	81	4	205	26	28	21	24	1.99
52761391--52761518	49	2.6	49	80	4	141	25	26	17	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310