genome.fa.s13.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  138  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44819972--44820042	28	2.5	28	88	8	117	32	15	23	28	1.95
44821455--44821740	40	7.2	40	87	5	404	25	27	22	23	1.99
44821455--44821740	79	3.6	80	86	5	404	25	27	22	23	1.99
44821471--44821745	119	2.3	119	98	0	532	25	28	21	24	1.99
44823358--44823486	51	2.5	50	88	7	197	30	14	26	28	1.95
44826278--44826346	21	3.1	22	79	10	70	46	13	11	28	1.78
44826690--44826736	21	2.2	21	84	0	58	12	8	42	36	1.74
44827322--44827467	65	2.3	65	85	4	190	42	10	24	21	1.85
44835223--44835305	42	2.0	43	85	2	114	15	32	24	27	1.95
44837212--44837261	25	2.0	25	88	0	73	38	20	2	40	1.64
44840038--44840149	27	4.1	27	85	3	127	16	24	23	35	1.95
44840038--44840149	54	2.1	54	88	3	163	16	24	23	35	1.95
44848042--44848207	54	3.1	54	90	1	244	16	24	23	35	1.95
44848042--44848207	27	6.2	26	84	7	197	16	24	23	35	1.95
44848042--44848207	81	2.0	81	85	4	219	16	24	23	35	1.95
44849398--44849426	14	2.1	14	100	0	58	58	6	0	34	1.25
44853817--44853858	20	2.1	20	100	0	84	28	14	28	28	1.95
44860826--44860872	19	2.5	19	87	12	71	61	0	12	25	1.31
44861392--44861467	22	3.5	22	78	7	82	11	18	22	47	1.81
44869076--44869260	3	61.7	3	73	11	130	33	7	1	57	1.34
44869066--44869130	25	2.7	24	83	4	78	35	6	3	55	1.40
44869066--44869263	23	8.5	23	71	15	95	32	8	1	57	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44869423--44869617	3	64.7	3	71	8	119	30	7	2	59	1.38
44881282--44881878	44	13.6	44	67	6	305	29	22	20	27	1.98
44881254--44881901	88	7.4	88	86	1	852	29	22	20	27	1.98
44881254--44881850	264	2.3	264	96	0	1095	29	22	19	28	1.98
44881875--44882483	44	13.4	45	71	14	353	31	17	21	29	1.96
44881873--44882449	181	3.2	181	89	2	856	32	16	21	29	1.96
44885246--44885418	3	57.0	3	73	8	82	61	5	6	26	1.44
44885190--44885299	12	9.4	12	72	15	54	63	5	5	25	1.38
44885286--44885320	16	2.1	17	89	5	54	68	5	5	20	1.31
44885375--44885418	22	2.0	22	86	0	61	65	0	4	29	1.12
44886655--44886821	3	55.7	3	69	10	83	32	8	1	56	1.39
44886711--44886821	31	3.6	31	75	9	79	29	8	1	60	1.36
44886764--44886805	17	2.5	17	88	7	59	28	7	2	61	1.35
44886784--44886824	14	2.9	15	89	7	59	31	4	2	60	1.30
44886913--44886963	26	2.0	25	82	17	61	23	13	1	60	1.43
44886984--44887195	3	71.7	3	72	9	114	30	8	1	59	1.35
44887033--44887089	29	1.9	30	89	3	89	26	7	0	66	1.17
44893802--44893930	58	2.2	58	97	1	240	54	12	8	24	1.65
44897324--44897364	20	2.2	19	86	8	57	48	0	12	39	1.41
44899182--44899213	15	2.1	15	94	0	55	15	6	9	68	1.36
44900463--44900500	19	2.0	20	89	5	60	55	31	10	2	1.48
44902325--44902617	50	5.8	50	74	7	236	25	16	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44902373--44902554	101	1.8	100	83	7	242	26	17	24	30	1.97
44902326--44902611	151	1.9	151	84	5	389	25	16	25	32	1.96
44907774--44907866	48	1.9	48	93	0	159	25	24	24	24	2.00
44907774--44907878	48	2.2	48	89	0	156	25	24	23	25	2.00
44911837--44911916	30	2.7	30	80	0	106	22	25	11	41	1.87
44911945--44912008	29	2.2	30	83	8	78	17	26	14	42	1.87
44911972--44912027	29	1.9	29	81	0	67	23	26	14	35	1.93
44912004--44912066	29	2.2	29	85	0	81	25	28	15	30	1.96
44918348--44918531	40	4.7	40	80	11	177	25	21	27	26	1.99
44918400--44918554	79	2.0	79	81	10	183	25	20	27	25	1.99
44922405--44922525	47	2.6	47	90	0	188	28	30	7	33	1.85
44928032--44928090	3	19.7	3	92	0	100	33	1	0	64	1.04
44930122--44930207	43	2.0	43	97	0	163	27	24	15	32	1.95
44930217--44930284	34	2.0	34	97	0	127	45	4	20	29	1.70
44933743--44933780	19	2.0	19	100	0	76	47	0	21	31	1.51
44934854--44934913	17	3.4	17	69	13	57	55	1	31	11	1.46
44934849--44934915	21	3.4	21	64	21	54	55	2	31	10	1.49
44934853--44934936	37	2.4	33	81	14	114	50	3	32	14	1.60
44934855--44934929	37	2.0	37	100	0	150	54	2	32	10	1.49
44943527--44943587	26	2.4	25	81	5	77	29	9	16	44	1.80
44943946--44944121	83	2.1	83	97	0	334	27	19	19	32	1.97
44944045--44944757	119	6.0	119	94	0	1183	30	18	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44944749--44944928	44	4.1	44	73	8	168	29	25	14	30	1.95
44951898--44951959	17	3.6	17	91	4	106	35	12	12	38	1.82
44951898--44951967	35	2.0	36	97	2	133	35	14	11	38	1.82
44954616--44954656	20	2.1	19	86	4	55	21	0	31	46	1.52
44969350--44969462	45	2.5	44	84	8	133	25	27	23	23	2.00
44969794--44969903	43	2.6	43	89	0	175	30	30	24	13	1.94
44969896--44969979	38	2.2	38	86	0	123	33	27	19	20	1.96
44977356--44977533	27	6.6	27	85	3	214	26	14	28	30	1.95
44977357--44977512	82	1.9	81	89	3	242	26	14	28	30	1.95
44977353--44977533	82	2.2	81	84	2	238	27	14	27	30	1.95
44984393--44984750	98	3.7	98	97	0	664	20	25	20	32	1.97
44991747--44991887	67	2.0	67	82	10	169	21	27	19	31	1.98
44991996--44992028	14	2.4	14	100	0	66	27	0	30	42	1.56
44993653--44993870	40	5.5	40	90	2	280	22	23	28	25	1.99
45001441--45001604	40	4.1	40	89	3	224	21	23	28	26	1.99
45010415--45010502	45	2.0	45	86	2	124	28	26	15	29	1.96
45016425--45016576	76	2.0	76	94	0	268	38	16	8	36	1.79
45018074--45018141	27	2.5	27	90	0	100	23	26	20	29	1.99
45020648--45020863	79	2.7	78	79	10	233	25	26	21	26	1.99
45020648--45020870	39	5.7	40	84	8	248	25	26	21	26	2.00
45023344--45023531	60	3.1	60	96	0	340	45	15	12	27	1.82
45024481--45024514	17	1.9	17	94	5	59	67	5	0	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45025235--45025263	7	4.1	7	100	0	58	86	0	0	13	0.58
45025497--45025581	43	2.0	43	95	0	152	43	7	4	44	1.52
45027113--45027160	22	2.2	21	77	3	51	50	4	2	43	1.33
45030245--45030355	43	2.6	43	81	5	118	27	17	24	31	1.97
45030248--45030355	42	2.5	42	77	7	119	26	17	24	31	1.97
45030209--45030365	43	3.7	42	71	12	115	25	17	26	31	1.97
45036443--45036530	44	2.0	44	91	4	142	26	13	26	34	1.93
45038571--45038639	21	3.4	20	73	15	70	56	7	1	34	1.36
45038603--45038661	30	2.0	30	83	6	75	57	8	0	33	1.29
45051587--45051625	19	2.1	19	100	0	78	30	15	15	38	1.88
45057724--45057819	43	2.2	43	96	0	174	19	28	29	22	1.98
45067784--45068001	79	2.7	79	80	6	235	26	27	21	25	1.99
45067798--45068001	40	5.1	40	82	7	236	25	27	21	25	1.99
45072228--45072397	46	3.7	46	75	10	175	22	18	27	31	1.97
45072222--45072392	93	1.8	93	89	0	270	22	18	28	30	1.98
45083728--45083896	48	3.6	48	81	7	170	28	20	27	23	1.99
45085784--45085861	40	2.0	40	87	2	113	26	15	25	32	1.95
45085793--45085894	40	2.5	40	87	0	114	24	16	25	33	1.96
45085881--45085948	28	2.4	28	85	4	84	30	14	26	27	1.95
45088349--45088445	37	2.6	37	83	0	113	30	18	23	26	1.98
45088411--45088512	48	2.1	48	98	0	195	24	16	27	31	1.96
45088411--45088541	48	2.7	48	91	0	190	24	16	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45092941--45093044	40	2.6	40	82	0	118	24	17	25	32	1.96
45093031--45093142	28	4.0	28	77	4	100	28	12	27	31	1.93
45108547--45108723	96	1.9	95	83	3	230	27	18	30	23	1.98
45108497--45108871	50	7.7	48	73	14	225	27	18	29	24	1.98
45114668--45114726	30	2.0	30	89	0	91	45	22	10	22	1.81
45122373--45122550	91	2.0	91	93	2	304	46	16	14	23	1.83
45129385--45129443	27	2.2	27	78	6	66	18	10	3	67	1.33
45143081--45143150	25	2.8	25	91	0	104	25	22	24	27	2.00
45173183--45173218	19	1.9	18	88	5	54	44	13	0	41	1.44
45173514--45173574	30	2.0	30	83	0	77	31	22	8	37	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310