genome.fa.s13.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  144  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46907038--46907116	29	2.7	30	82	13	110	30	30	13	25	1.94
46914140--46914218	29	2.7	30	82	13	110	29	30	15	25	1.96
46927182--46927264	43	1.9	43	97	0	157	20	19	32	27	1.97
46938582--46938995	48	8.7	49	75	10	251	22	29	20	27	1.99
46938582--46938995	46	8.7	47	76	11	189	22	29	20	27	1.99
46944757--46944924	49	3.4	49	81	4	189	27	23	27	21	1.99
46949481--46949743	130	2.0	130	99	0	517	40	13	12	33	1.82
46955493--46955700	67	3.2	64	76	11	197	31	17	29	22	1.96
46964854--46964894	19	2.1	20	86	4	57	41	0	26	31	1.56
46965396--46965523	48	2.6	49	79	4	143	28	22	25	22	1.99
46968684--46968720	18	2.1	18	100	0	74	40	27	5	27	1.78
46973808--46973899	45	2.0	45	97	0	175	20	18	17	43	1.88
46974576--46974695	39	3.1	39	88	0	177	30	20	22	26	1.99
46976931--46977883	6	158.8	6	99	0	1870	16	0	33	49	1.47
46982118--46982201	40	2.1	40	95	0	150	63	7	7	22	1.45
46987449--46987537	44	2.0	43	82	2	106	21	14	25	38	1.92
46988376--46988405	16	1.9	16	93	6	53	50	20	0	30	1.49
46989106--46989145	21	2.0	21	85	5	55	27	7	17	47	1.74
46989968--46989996	12	2.4	12	100	0	58	17	10	17	55	1.69
47000048--47000097	15	3.3	15	75	10	57	38	2	8	52	1.43
47013190--47013241	25	2.0	26	85	3	70	48	46	3	1	1.31
47014438--47014499	19	3.3	19	74	17	74	30	4	9	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47014423--47014499	38	2.0	38	97	0	145	32	3	10	53	1.53
47014428--47014516	38	2.4	36	79	20	112	33	4	8	52	1.53
47021975--47022036	22	2.9	21	80	9	72	58	0	1	40	1.08
47021977--47022036	21	2.8	21	80	16	70	58	0	1	40	1.08
47022013--47022066	16	3.4	16	73	21	51	61	0	0	38	0.96
47022014--47022086	31	2.4	31	83	4	85	60	2	0	36	1.11
47022575--47022634	30	2.0	30	93	0	102	26	3	13	56	1.52
47023815--47023916	35	3.1	35	66	21	103	18	6	28	46	1.75
47023816--47023942	62	2.0	62	92	0	209	18	8	27	44	1.79
47025631--47025655	12	2.1	12	100	0	50	32	8	44	16	1.76
47026807--47026925	51	2.4	51	84	8	147	27	18	5	47	1.71
47035763--47035822	31	1.9	31	96	0	111	38	20	11	30	1.88
47035967--47036130	46	3.6	47	77	9	151	23	29	18	28	1.97
47041093--47041227	40	3.3	40	74	7	112	30	26	14	28	1.95
47042787--47042852	23	2.9	23	81	0	69	48	28	10	12	1.74
47045660--47045713	27	2.0	27	89	7	83	42	11	18	27	1.84
47047938--47048036	51	1.9	51	91	0	162	30	13	26	30	1.94
47048416--47048500	28	3.0	28	98	0	161	36	2	38	22	1.67
47049400--47049492	45	2.1	45	97	0	177	35	5	21	37	1.76
47055201--47055429	100	2.3	98	84	3	271	27	18	24	29	1.98
47055201--47055439	49	4.8	50	79	3	241	27	19	24	29	1.98
47060038--47060084	10	4.7	10	83	0	58	21	27	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47060039--47060085	20	2.3	20	88	0	76	23	25	17	34	1.96
47061650--47061674	12	2.1	12	100	0	50	76	8	0	16	1.02
47062706--47062740	12	2.8	12	91	4	52	68	0	20	11	1.20
47062721--47062755	17	2.1	17	89	10	54	71	0	25	2	1.00
47066625--47066684	25	2.4	25	94	0	102	48	38	6	6	1.56
47066723--47066776	28	1.9	28	85	7	74	12	61	11	14	1.58
47067888--47067928	16	2.7	15	88	7	64	29	4	7	58	1.46
47067928--47067976	18	2.5	20	71	21	50	36	0	10	53	1.35
47067917--47067984	29	2.4	28	76	11	66	35	0	10	54	1.35
47068144--47068242	22	4.5	21	77	16	76	30	5	5	59	1.40
47068254--47068307	23	2.3	24	83	3	65	35	7	5	51	1.53
47068508--47068660	3	51.0	3	100	0	306	33	0	0	66	0.92
47068681--47068755	25	2.9	26	74	7	64	36	9	5	49	1.58
47072697--47072732	4	9.0	4	87	0	54	25	22	2	50	1.63
47077356--47077531	92	1.9	91	84	4	237	27	17	19	35	1.94
47077294--47077850	163	3.4	159	78	9	533	27	17	21	34	1.95
47078944--47078979	10	3.6	10	88	0	54	0	11	8	80	0.90
47078944--47078979	15	2.4	15	90	0	63	0	11	8	80	0.90
47082125--47082149	12	2.1	12	100	0	50	16	44	0	40	1.47
47091737--47091948	46	4.6	47	80	12	217	24	29	18	27	1.98
47098923--47099000	29	2.6	30	80	8	88	52	6	6	34	1.53
47101593--47101635	21	1.9	24	86	13	65	41	4	0	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47102185--47102230	24	2.0	23	91	4	74	23	8	0	67	1.18
47102691--47102742	18	2.8	19	79	5	61	50	1	1	46	1.23
47111333--47111357	13	1.9	13	100	0	50	24	24	12	40	1.88
47120608--47120653	20	2.3	20	81	3	58	23	19	30	26	1.98
47121149--47121220	36	2.0	36	100	0	144	33	8	13	44	1.74
47123814--47123880	28	2.5	28	80	11	86	29	1	2	65	1.16
47123892--47123956	20	3.4	19	82	6	78	40	0	3	56	1.15
47124662--47124715	21	2.8	18	74	17	54	46	9	0	44	1.35
47128975--47129012	20	1.9	20	94	0	67	71	0	0	28	0.87
47133402--47133540	60	2.3	61	79	8	151	25	25	19	28	1.99
47138394--47138443	21	2.4	21	87	9	68	44	8	2	46	1.44
47144310--47144373	31	2.1	31	93	0	110	23	23	15	37	1.93
47144581--47144661	24	3.4	24	93	5	137	28	22	19	29	1.98
47144588--47144660	23	3.1	23	96	2	128	30	20	20	28	1.98
47144719--47144775	9	5.9	9	73	15	51	35	21	8	35	1.84
47144707--47144777	20	3.5	20	94	0	124	32	21	11	35	1.89
47144712--47144766	11	5.4	11	70	16	55	30	20	12	36	1.90
47144814--47144861	25	1.9	25	86	0	69	25	16	25	33	1.96
47148501--47148651	43	3.5	42	81	5	142	30	24	17	27	1.97
47150084--47150131	25	1.9	25	82	0	60	35	22	20	20	1.96
47166290--47166499	40	5.3	39	87	5	233	24	21	28	25	1.99
47166237--47166499	120	2.2	120	81	4	300	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47166290--47166534	80	3.1	80	81	3	228	25	21	28	24	1.99
47168711--47168929	49	4.6	49	78	4	155	26	27	19	26	1.99
47168712--47168888	49	3.6	49	82	5	164	25	25	19	28	1.99
47168712--47168888	98	1.8	97	81	3	221	25	25	19	28	1.99
47170876--47171178	40	7.6	40	90	2	387	24	20	28	27	1.99
47179851--47179970	46	2.6	46	83	2	141	24	28	19	28	1.98
47231268--47231306	21	1.9	20	94	5	69	46	23	0	30	1.53
47233730--47233758	13	2.2	13	100	0	58	58	13	0	27	1.36
47236279--47236374	40	2.5	38	84	3	120	37	37	12	12	1.81
47245423--47245529	29	3.8	28	72	10	92	28	14	30	25	1.95
47245415--47245527	58	2.0	57	82	5	138	30	14	29	25	1.95
47251641--47251672	16	2.0	16	100	0	64	50	25	6	18	1.70
47253173--47253278	29	3.7	28	74	10	99	28	16	28	26	1.97
47256517--47256576	29	2.1	29	90	6	95	36	3	0	60	1.14
47256507--47256678	20	8.4	20	69	24	60	35	4	1	59	1.24
47256908--47256980	22	3.4	22	78	17	73	39	5	0	54	1.23
47263970--47264053	29	2.9	28	72	11	80	30	15	28	25	1.96
47265874--47265923	21	2.4	21	93	0	82	32	22	16	30	1.95
47268659--47268829	93	1.8	93	96	0	315	28	29	21	21	1.98
47268654--47268826	46	3.7	46	80	13	219	28	28	21	21	1.98
47269249--47269308	30	2.0	30	90	0	93	30	25	8	36	1.85
47272929--47272965	18	2.1	18	100	0	74	16	24	5	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47290832--47290889	30	1.9	30	92	0	98	36	12	22	29	1.90
47291231--47291446	46	4.6	45	81	11	197	28	19	29	22	1.98
47291231--47291496	47	5.7	45	75	12	177	28	19	29	22	1.98
47291231--47291493	140	1.9	141	83	5	345	28	19	29	22	1.98
47297721--47297786	32	2.1	32	100	0	132	48	18	0	33	1.48
47303365--47303698	167	2.0	167	100	0	668	35	20	12	31	1.90
47304880--47304974	32	3.0	32	88	0	136	29	26	9	34	1.88
47313752--47313856	44	2.4	43	82	4	122	30	29	19	20	1.97
47321192--47321233	21	2.0	22	86	13	61	35	2	26	35	1.70
47338700--47338724	13	1.9	13	100	0	50	32	4	24	40	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310