Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  277  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91194212--91194283
13
5.4
14
71
25
50
45
1
2
50
1.25
91194347--91194389
20
2.1
21
84
16
56
30
4
9
55
1.52
91194373--91194419
15
3.3
15
86
13
57
31
0
14
53
1.42
91194646--91194736
28
3.3
28
70
17
75
35
14
3
47
1.60
91196339--91196378
18
2.1
20
86
9
57
55
0
7
37
1.29
91200114--91200186
5
13.8
5
79
16
60
78
0
2
19
0.88
91200114--91200188
25
2.8
29
76
13
72
77
0
4
18
0.92
91204389--91204449
31
2.0
31
96
0
113
13
14
40
31
1.84
91205440--91205497
26
2.2
26
93
0
98
34
5
24
36
1.78
91206982--91207034
26
2.0
26
82
7
63
37
20
15
26
1.92
91210403--91210479
23
3.2
24
81
15
81
61
2
5
31
1.32
91210398--91210635
3
79.7
3
65
17
59
61
5
7
25
1.44
91211291--91211349
22
2.6
22
74
12
57
30
35
5
28
1.79
91217449--91217482
13
2.6
13
90
0
50
23
14
0
61
1.33
91227158--91227314
83
1.9
84
90
1
253
48
8
8
34
1.64
91228096--91228261
47
3.5
47
77
6
181
33
22
4
39
1.73
91228122--91228268
49
3.0
49
79
7
201
33
21
4
40
1.72
91228082--91228268
96
1.9
96
91
0
302
33
22
4
39
1.74
91228841--91228870
15
1.9
16
93
6
53
40
0
3
56
1.16
91235071--91235116
22
2.1
22
100
0
92
21
17
17
43
1.88
91235237--91235322
30
2.8
30
72
8
84
33
6
18
40
1.78
91235709--91235756
22
2.2
22
92
0
78
31
50
4
14
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91236853--91236883
16
1.9
16
93
0
53
32
0
0
67
0.91
91238422--91238467
22
2.1
22
91
0
74
50
4
10
34
1.57
91257321--91257350
3
9.7
3
92
7
51
66
0
33
0
0.92
91258726--91258960
119
2.0
119
96
0
434
40
17
16
26
1.90
91264707--91264769
29
2.1
31
82
11
78
31
7
11
49
1.67
91277787--91277854
32
2.1
32
88
0
100
35
8
8
47
1.66
91279515--91279558
23
1.9
23
95
0
79
40
20
13
25
1.89
91280518--91280559
22
1.9
22
95
0
75
35
9
11
42
1.74
91281589--91281669
40
2.0
40
97
0
153
34
12
16
37
1.86
91283378--91283530
51
3.0
51
88
0
225
34
26
9
30
1.87
91283658--91283727
33
2.1
33
86
0
95
24
38
2
34
1.70
91284768--91284803
16
2.2
16
90
0
54
30
2
27
38
1.71
91285556--91286166
318
1.9
321
89
3
953
26
22
17
34
1.95
91287492--91287816
124
2.5
128
87
4
442
36
11
20
32
1.87
91290810--91290852
2
21.5
2
100
0
86
0
48
0
51
1.00
91292498--91292565
29
2.3
31
79
5
77
41
17
8
32
1.80
91292926--91292984
29
2.0
29
100
0
118
42
13
16
27
1.86
91302363--91302423
19
3.2
18
75
9
50
65
4
0
29
1.13
91302383--91302439
26
2.0
26
87
12
78
68
7
1
22
1.23
91308187--91308226
20
2.0
20
85
5
53
65
5
2
27
1.27
91308215--91308254
20
2.0
21
90
5
64
62
2
5
30
1.29
91309318--91309349
16
2.0
16
100
0
64
56
0
6
37
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91309890--91309938
13
3.8
13
78
5
55
48
0
12
38
1.41
91315026--91315065
19
2.1
19
86
9
55
40
2
0
57
1.12
91315182--91315211
7
4.3
7
95
0
51
63
0
0
36
0.95
91315173--91315223
14
3.6
14
84
7
59
58
0
0
41
0.98
91317967--91318005
12
3.2
13
92
7
64
64
0
0
35
0.94
91317970--91318006
3
12.3
3
88
11
58
67
0
0
32
0.91
91319676--91319763
41
2.2
40
86
6
117
39
3
5
51
1.43
91322096--91322138
3
14.3
3
83
9
52
32
4
0
62
1.15
91322096--91322161
12
5.6
12
75
18
59
31
4
0
63
1.14
91322098--91322144
24
2.0
24
95
0
85
34
4
0
61
1.15
91324960--91325004
18
2.6
18
85
3
56
33
8
6
51
1.59
91324975--91325057
3
27.0
3
71
9
51
30
9
3
56
1.48
91325017--91325057
9
4.7
9
87
6
57
34
7
0
58
1.26
91330615--91330653
21
1.9
21
84
5
53
41
0
0
58
0.98
91331271--91331347
38
2.0
38
100
0
154
24
28
12
33
1.93
91335321--91335355
18
1.9
18
88
11
54
62
0
0
37
0.95
91338488--91338538
3
17.3
3
81
4
59
25
0
39
35
1.56
91339592--91339635
21
2.0
22
83
16
56
50
2
4
43
1.35
91340318--91340350
14
2.3
15
89
5
50
84
0
15
0
0.61
91340958--91341017
29
2.1
29
100
0
120
35
31
3
30
1.74
91346684--91346726
15
2.9
14
80
13
50
20
4
2
72
1.14
91349582--91349612
11
2.8
11
95
0
53
19
48
3
29
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91350163--91350213
18
2.8
18
90
0
75
29
25
13
31
1.94
91352965--91352995
11
2.8
11
95
0
53
19
48
3
29
1.64
91357860--91357891
16
1.9
17
93
6
57
43
9
6
40
1.62
91357861--91357902
16
2.7
16
85
10
52
50
7
4
38
1.51
91364748--91364840
18
5.2
18
90
0
150
31
16
24
27
1.96
91364748--91364840
36
2.6
36
94
0
168
31
16
24
27
1.96
91367278--91367320
12
3.5
12
81
6
59
74
9
2
13
1.16
91367278--91367332
24
2.2
25
93
3
94
70
10
3
14
1.28
91367291--91367331
12
3.4
12
80
12
57
70
12
4
12
1.31
91372130--91372170
21
2.0
21
90
0
64
29
21
29
19
1.98
91375967--91376011
22
2.0
22
100
0
90
42
17
8
31
1.80
91378307--91378351
15
3.0
15
86
0
63
55
0
13
31
1.38
91378628--91378652
4
6.2
4
100
0
50
72
0
0
28
0.86
91381547--91381602
28
2.0
29
82
3
69
62
0
10
26
1.28
91386036--91386341
127
2.4
127
80
1
362
34
21
17
26
1.95
91388208--91388317
26
4.2
26
94
2
177
34
4
24
36
1.76
91388913--91388964
25
2.1
25
96
0
95
38
17
21
23
1.93
91390380--91390759
131
2.9
131
89
0
582
29
19
18
31
1.96
91402586--91403287
44
16.0
44
87
0
866
29
15
28
26
1.96
91405888--91406267
131
2.9
131
90
0
582
29
19
18
31
1.96
91407114--91407156
16
2.8
15
75
6
50
39
18
0
41
1.51
91409658--91409801
64
2.3
63
91
1
225
43
13
17
25
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91413207--91413273
23
2.8
24
82
10
68
46
31
0
22
1.52
91414455--91414827
117
3.2
117
79
12
363
27
6
8
58
1.52
91415027--91415088
3
22.3
3
76
12
53
27
3
0
69
1.04
91415009--91415071
18
3.3
20
81
14
64
26
1
0
71
0.95
91414998--91415085
41
2.1
43
80
6
99
30
2
1
65
1.12
91415560--91415587
3
9.3
3
100
0
56
32
0
0
67
0.91
91421005--91421061
30
1.9
29
86
10
80
40
35
10
14
1.80
91422301--91422333
12
2.8
12
82
17
50
36
0
0
63
0.95
91422299--91422331
16
2.1
15
94
5
57
36
0
0
63
0.95
91422349--91422494
7
21.4
7
64
22
53
36
5
0
58
1.21
91422458--91422524
27
2.5
28
81
11
77
37
5
0
56
1.24
91425744--91425800
30
1.9
29
86
10
80
40
35
10
14
1.80
91427040--91427072
12
2.8
12
82
17
50
36
0
0
63
0.95
91427038--91427070
16
2.1
15
94
5
57
36
0
0
63
0.95
91427088--91427233
7
21.4
7
64
22
53
36
5
0
58
1.21
91427197--91427263
27
2.5
28
81
11
77
37
5
0
56
1.24
91427750--91427806
30
1.9
29
86
10
80
40
35
10
14
1.80
91429046--91429078
12
2.8
12
82
17
50
36
0
0
63
0.95
91429044--91429076
16
2.1
15
94
5
57
36
0
0
63
0.95
91429094--91429239
7
21.4
7
64
22
53
36
5
0
58
1.21
91429203--91429269
27
2.5
28
81
11
77
37
5
0
56
1.24
91432882--91432924
15
2.9
15
80
16
54
25
25
9
39
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91435078--91436076
501
2.0
499
95
0
1802
31
18
23
26
1.97
91442696--91442748
26
2.0
27
85
7
74
24
15
22
37
1.92
91443956--91444065
26
4.2
26
97
0
184
36
24
5
33
1.79
91445090--91445146
30
1.9
29
89
3
87
40
36
8
14
1.76
91445085--91445157
30
2.5
30
81
2
85
41
39
6
12
1.69
91446388--91446420
16
2.1
15
94
5
57
36
0
0
63
0.95
91446438--91446583
7
21.4
7
64
22
53
36
5
0
58
1.21
91452088--91452129
19
2.3
19
87
4
59
54
0
2
42
1.13
91455696--91455743
24
1.9
26
84
16
66
58
6
0
35
1.23
91457254--91457670
88
4.7
87
77
9
382
36
19
16
26
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310