genome.fa.s13.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  129  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41629501--41629622	46	2.6	47	84	5	147	26	22	14	36	1.93
41629958--41630018	30	2.0	30	84	6	79	29	24	4	40	1.76
41630869--41630969	39	2.6	39	93	0	175	28	2	22	45	1.67
41632074--41632109	18	2.0	18	88	0	54	22	22	2	52	1.59
41634393--41634508	43	2.7	44	83	10	134	27	27	18	25	1.98
41637207--41637321	55	2.1	56	83	8	146	34	21	24	19	1.96
41637232--41637321	27	3.2	27	85	7	119	32	23	24	20	1.98
41637427--41637519	28	3.3	28	86	3	134	31	7	29	32	1.85
41657461--41657540	35	2.3	35	84	0	106	25	21	31	22	1.98
41659178--41659238	30	2.0	30	100	0	122	26	6	16	50	1.69
41674598--41674652	28	2.0	28	88	0	83	29	18	27	25	1.98
41677232--41677277	23	2.0	23	82	0	56	28	0	17	54	1.43
41677923--41678004	29	2.8	29	92	0	137	37	13	24	24	1.91
41679215--41679243	9	3.3	9	90	9	51	89	0	0	10	0.48
41681523--41681557	17	2.0	18	94	5	63	11	40	31	17	1.85
41688269--41688383	27	4.3	26	87	5	149	36	23	23	16	1.94
41688269--41688383	54	2.1	54	88	3	169	36	23	23	16	1.94
41688772--41688801	8	3.8	8	90	0	51	3	26	26	43	1.70
41689980--41690087	26	4.2	26	93	0	189	36	24	7	32	1.83
41696071--41696163	27	3.5	27	81	10	102	38	23	23	13	1.91
41696071--41696185	54	2.1	54	82	3	133	35	24	23	16	1.95
41696089--41696182	27	3.4	27	84	10	111	32	24	24	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41702789--41702840	16	3.3	15	76	7	50	32	11	15	40	1.83
41704977--41705028	20	2.6	20	90	0	86	13	30	30	25	1.94
41705104--41705128	13	1.9	13	100	0	50	0	40	28	32	1.57
41706715--41706766	20	2.6	20	90	0	86	13	30	30	25	1.94
41706842--41706866	13	1.9	13	100	0	50	0	40	28	32	1.57
41712884--41712917	10	3.3	10	88	8	50	58	17	20	2	1.51
41715217--41715260	23	1.9	23	86	9	63	31	11	25	31	1.91
41725318--41725373	28	2.0	28	100	0	112	39	7	10	42	1.67
41728753--41728919	46	3.6	46	73	13	162	30	30	17	20	1.96
41728761--41728933	93	1.9	93	90	0	274	30	30	18	20	1.97
41735982--41736151	46	3.7	46	73	13	159	30	27	20	22	1.98
41738356--41738502	40	3.7	40	94	0	249	22	23	24	29	1.99
41738356--41738523	80	2.1	78	87	4	239	22	22	25	30	1.99
41744202--41744323	45	2.7	46	87	3	158	23	23	22	30	1.99
41744196--41744323	46	2.8	46	84	3	161	24	24	21	30	1.99
41744249--41744790	177	3.1	175	81	3	586	26	24	19	29	1.98
41744692--41744894	44	4.7	44	68	11	114	27	22	20	30	1.98
41744249--41744894	177	3.7	176	77	6	578	26	24	19	29	1.98
41744780--41745035	44	5.7	43	71	13	133	29	24	16	29	1.97
41744911--41745079	89	1.9	89	84	4	225	30	25	14	28	1.95
41744911--41745084	45	3.9	44	76	7	154	31	25	14	29	1.95
41746249--41746293	3	15.0	3	100	0	90	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41752049--41752081	8	4.0	8	96	4	57	39	12	24	24	1.89
41754497--41754548	19	2.6	19	78	6	59	55	1	3	38	1.29
41754608--41754636	15	2.0	15	93	6	51	62	0	6	31	1.22
41755456--41755495	10	3.9	10	90	3	53	62	12	10	15	1.54
41755831--41755893	24	2.6	24	92	5	101	7	0	39	52	1.31
41756735--41756929	41	4.8	41	82	4	232	33	19	23	24	1.97
41756942--41757057	53	2.2	54	81	4	128	46	31	2	18	1.63
41757184--41757231	7	6.7	7	80	4	51	22	2	27	47	1.62
41757184--41757234	15	3.5	15	81	2	59	21	1	29	47	1.62
41757829--41757908	8	10.1	8	94	2	135	72	1	0	26	0.92
41757829--41757905	23	3.3	23	94	3	136	72	1	0	25	0.92
41760801--41761128	23	14.3	23	78	8	260	32	6	22	39	1.79
41760804--41761079	114	2.4	114	78	10	281	33	6	21	38	1.79
41761806--41761968	43	3.8	43	85	1	218	23	18	31	26	1.97
41761806--41761968	87	1.9	87	85	0	227	23	18	31	26	1.97
41764835--41764903	25	2.8	26	78	10	74	31	21	23	23	1.98
41764843--41764948	23	4.4	23	74	12	81	34	19	22	22	1.96
41764896--41764985	24	3.8	24	76	2	101	35	18	22	23	1.96
41764872--41764983	47	2.4	47	84	3	136	35	18	21	24	1.95
41770995--41771123	46	2.9	44	84	7	147	24	29	22	24	1.99
41771121--41771278	38	4.1	38	90	1	217	31	24	20	23	1.98
41779032--41779164	27	4.9	27	89	0	185	27	20	9	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41779163--41779292	27	4.8	27	82	6	147	39	20	11	29	1.87
41779163--41779292	54	2.4	54	84	2	163	39	20	11	29	1.87
41780091--41780160	25	2.8	25	93	0	113	27	25	22	24	2.00
41780090--41780185	25	3.9	24	81	9	95	28	23	22	25	2.00
41780091--41780185	50	1.9	50	80	8	113	28	24	23	24	2.00
41780444--41780498	29	1.9	28	88	3	83	21	23	27	27	1.99
41782605--41782668	26	2.4	27	86	2	85	26	23	7	42	1.81
41782561--41782688	26	4.8	26	72	13	66	32	21	10	35	1.87
41782897--41782960	26	2.4	27	86	2	85	26	23	7	42	1.81
41782458--41783041	292	2.0	292	98	0	1141	30	19	17	32	1.95
41782992--41783115	27	4.6	27	77	7	110	41	22	8	28	1.82
41782992--41783172	54	3.3	55	80	7	149	40	19	8	30	1.81
41783072--41783178	27	3.9	27	76	13	101	41	17	8	32	1.80
41783219--41783296	27	2.9	26	75	11	77	38	21	19	20	1.94
41784106--41784175	25	2.8	25	93	0	113	27	25	22	24	2.00
41784105--41784200	25	3.9	24	81	9	95	28	23	22	25	2.00
41784106--41784200	50	1.9	50	80	8	113	28	24	23	24	2.00
41785367--41785395	15	1.9	15	100	0	58	13	0	31	55	1.39
41785954--41786111	43	3.7	43	74	10	144	24	18	25	31	1.98
41794267--41794301	17	2.1	17	94	0	61	20	8	0	71	1.11
41794657--41794681	6	4.2	6	100	0	50	16	0	0	84	0.63
41802750--41802927	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41802771--41802926	82	1.9	81	88	3	233	29	28	15	26	1.96
41805082--41805196	28	4.1	28	86	1	140	27	15	32	24	1.95
41807947--41808018	28	2.6	28	100	0	144	31	19	27	20	1.97
41809025--41809197	39	4.4	38	86	2	220	26	26	21	26	1.99
41814609--41814692	28	3.2	28	65	25	83	23	16	29	29	1.96
41814505--41814736	49	4.7	49	84	3	295	25	18	27	29	1.98
41821704--41821815	28	4.0	28	80	2	109	28	14	29	27	1.95
41826326--41826428	28	3.7	28	82	0	116	28	15	31	25	1.96
41826326--41826446	56	2.1	57	83	4	147	30	14	31	23	1.95
41826364--41826448	28	3.0	28	85	1	116	29	15	34	21	1.94
41828302--41828479	27	6.6	27	83	3	205	26	15	28	29	1.96
41828303--41828458	82	1.9	81	88	3	233	26	15	28	29	1.96
41828299--41828479	82	2.2	81	83	2	229	27	15	27	29	1.96
41843288--41843403	42	2.7	44	77	10	114	25	20	23	31	1.98
41846322--41846579	39	6.5	39	91	2	374	29	26	22	21	1.99
41860103--41860188	42	2.0	44	84	8	115	24	18	25	31	1.98
41868836--41868962	46	2.7	47	81	7	134	34	25	15	23	1.95
41869164--41869207	19	2.4	19	85	7	56	50	0	9	40	1.34
41876730--41876805	29	2.6	29	91	0	125	39	14	21	25	1.91
41881645--41881755	55	2.0	55	98	1	215	32	7	42	18	1.77
41882576--41882669	48	2.0	48	91	0	152	36	14	24	24	1.93
41894784--41894863	29	2.8	29	92	0	133	37	15	22	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41902855--41903006	43	3.6	43	87	3	157	23	30	21	25	1.98
41902883--41903053	43	4.0	43	84	7	197	23	30	21	24	1.99
41904927--41904956	15	2.1	15	93	6	53	36	26	6	30	1.82
41914212--41914246	6	5.8	6	90	10	54	17	0	0	82	0.66
41914212--41914246	11	2.9	12	87	12	54	17	0	0	82	0.66
41914213--41914246	17	1.9	18	94	5	61	17	0	0	82	0.67
41916207--41916255	20	2.5	20	86	0	62	24	16	38	20	1.92
41917926--41917968	20	2.2	19	87	4	59	20	16	34	27	1.94
41936311--41936478	46	3.6	46	77	9	187	25	29	18	26	1.98
41940065--41940470	47	8.8	45	66	19	137	27	19	30	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310