genome.fa.s13.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  109  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34753180--34753277	33	3.0	33	77	1	108	32	10	22	34	1.88
34757976--34758019	20	2.2	20	95	0	79	9	22	45	22	1.80
34763064--34763178	32	3.5	33	77	9	99	33	11	23	32	1.90
34765961--34765987	13	2.1	13	100	0	54	40	0	29	29	1.57
34766742--34766797	19	2.8	21	65	13	55	25	7	25	42	1.80
34768066--34768097	16	2.0	16	100	0	64	56	18	0	25	1.42
34768388--34768455	32	2.2	31	94	2	118	14	11	22	51	1.74
34776668--34776846	3	60.0	3	73	9	109	30	6	2	61	1.32
34782768--34782842	27	2.6	28	74	14	73	41	28	8	22	1.82
34783326--34783356	15	2.1	15	93	0	53	0	35	0	64	0.94
34787262--34787419	44	3.6	43	75	9	131	28	17	22	31	1.97
34787348--34788058	143	5.0	144	85	1	890	32	19	21	27	1.97
34787778--34787901	44	2.8	45	77	4	135	27	21	23	27	1.99
34789188--34789346	3	53.7	3	72	12	105	29	5	2	62	1.29
34789299--34789377	15	5.4	14	69	13	52	30	3	0	65	1.10
34793752--34793780	7	4.1	7	100	0	58	68	0	0	31	0.89
34794308--34794350	18	2.4	18	80	7	52	48	0	4	46	1.22
34802308--34802422	27	4.3	26	85	5	140	35	23	24	16	1.95
34802308--34802422	54	2.1	54	87	3	160	35	23	24	16	1.95
34804041--34804150	26	4.2	26	94	2	168	36	23	4	35	1.76
34807576--34807735	51	3.2	50	91	1	248	29	23	15	32	1.95
34810275--34810302	12	2.3	12	100	0	56	85	0	7	7	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34810866--34810919	22	2.6	19	78	21	56	29	3	1	64	1.21
34811092--34811131	11	3.9	11	78	15	50	30	0	0	70	0.88
34811099--34811140	18	2.4	18	84	11	52	33	2	0	64	1.07
34811376--34811425	3	16.7	3	83	8	66	36	2	0	62	1.07
34812632--34812667	3	12.0	3	87	0	54	0	5	33	61	1.19
34816877--34816919	21	2.0	21	100	0	86	32	18	16	32	1.93
34836160--34836220	24	2.6	22	76	16	61	34	1	1	62	1.15
34850379--34850545	44	3.8	44	79	7	178	30	16	23	29	1.96
34850336--34850546	88	2.4	90	80	6	225	29	18	22	29	1.97
34861495--34861857	44	7.8	44	72	18	245	31	17	22	28	1.96
34861525--34861804	98	2.9	98	99	0	551	31	18	21	28	1.97
34861624--34861893	142	1.9	141	85	6	375	32	17	21	28	1.96
34863582--34863616	3	11.7	3	100	0	70	34	0	0	65	0.93
34865529--34865586	23	2.5	23	77	8	64	63	3	3	29	1.27
34865545--34865590	14	3.2	14	75	6	56	69	2	0	28	1.00
34865545--34865597	14	3.7	14	75	5	52	66	1	1	30	1.13
34868514--34868569	29	1.9	29	82	7	69	41	8	10	39	1.71
34868742--34868805	28	2.3	27	78	10	67	53	3	1	42	1.26
34879126--34879157	16	2.0	16	93	0	55	40	0	0	59	0.97
34882310--34883277	484	2.0	484	98	0	1882	25	27	22	24	2.00
34898336--34898369	12	3.1	11	88	12	52	44	0	0	55	0.99
34902852--34902894	11	4.0	11	78	6	52	23	44	4	27	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34903432--34903500	36	1.9	36	87	0	102	30	27	13	28	1.94
34903432--34903483	18	2.9	18	100	0	104	32	26	11	28	1.91
34907548--34907590	11	4.0	11	84	6	61	20	46	4	27	1.71
34907547--34907589	21	2.0	21	90	4	68	20	46	2	30	1.63
34908601--34908723	57	2.1	59	83	3	151	46	4	12	37	1.60
34911887--34911953	34	1.9	35	87	3	100	44	13	10	31	1.77
34918138--34918177	14	2.9	14	84	0	53	42	17	7	32	1.77
34918103--34918169	34	1.9	35	87	3	100	44	13	10	31	1.77
34920119--34920186	12	6.3	12	71	25	62	39	2	0	57	1.14
34920100--34920195	41	2.3	40	87	5	147	35	2	0	62	1.07
34920143--34920176	17	2.0	17	94	0	59	38	0	0	61	0.96
34922521--34922560	18	2.2	18	86	8	55	67	12	0	20	1.22
34923914--34923973	19	3.0	20	85	7	77	41	11	0	46	1.40
34925375--34925465	40	2.3	40	84	0	119	21	30	23	24	1.99
34928538--34928670	46	2.9	45	80	4	151	36	13	23	27	1.92
34935834--34935866	11	2.9	12	86	13	52	66	0	0	33	0.92
34936164--34936232	32	2.2	31	89	5	102	21	20	33	24	1.97
34936176--34936247	32	2.2	32	82	4	83	22	22	31	23	1.98
34938609--34938913	152	2.0	152	96	1	567	30	15	22	32	1.95
34940239--34940312	29	2.6	29	78	10	71	17	22	33	25	1.96
34942580--34942610	12	2.5	12	94	5	53	25	38	0	35	1.56
34942727--34942759	5	6.6	5	92	0	57	36	24	0	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34946171--34946250	40	2.0	40	95	0	142	28	16	15	40	1.88
34953709--34953745	19	2.0	19	89	5	58	72	8	0	18	1.08
34960635--34960674	6	6.7	6	97	0	71	17	0	0	82	0.67
34962493--34962640	28	5.3	28	82	2	174	27	25	12	34	1.92
34972226--34972265	13	3.0	13	82	7	53	60	0	5	35	1.19
34974041--34974085	17	2.4	19	82	14	58	60	8	13	17	1.58
34980835--34980894	16	3.6	17	76	13	63	55	0	5	40	1.22
34980835--34980894	32	1.9	33	83	10	81	55	0	5	40	1.22
34980975--34981004	11	2.6	12	89	10	53	70	0	23	6	1.11
34985574--34985611	12	3.1	12	85	14	51	76	0	13	10	1.02
34986411--34986458	15	3.0	16	81	9	62	35	0	4	60	1.16
34986479--34986517	18	2.0	20	85	9	55	33	2	2	61	1.23
34986511--34986575	20	3.4	19	74	18	71	38	4	3	53	1.37
34986537--34986580	17	2.6	16	82	10	52	38	2	2	56	1.24
34986544--34986604	23	2.6	23	82	15	72	37	4	3	54	1.39
34986680--34986798	23	5.0	22	75	18	98	31	6	5	56	1.47
34986680--34986818	24	5.8	23	75	16	106	34	7	4	53	1.48
34987107--34987155	22	2.2	23	85	3	64	28	4	6	61	1.38
35001049--35001262	75	2.9	73	85	4	295	30	17	21	30	1.96
35001040--35001262	73	3.1	71	83	6	302	30	17	21	31	1.96
35001181--35001548	89	4.2	87	79	9	311	26	16	18	38	1.92
35001181--35001413	89	2.6	87	86	4	315	28	16	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35001181--35001536	177	2.0	176	81	6	407	27	16	18	37	1.92
35001181--35001552	87	4.2	87	78	9	353	27	16	18	38	1.91
35002575--35002612	12	3.1	12	85	14	51	76	0	13	10	1.02
35003491--35003529	18	2.0	20	85	9	55	33	2	2	61	1.23
35003522--35003591	20	3.4	20	76	15	63	35	4	2	57	1.33
35003577--35003619	23	1.9	22	90	4	68	37	6	2	53	1.41
35003690--35003804	23	5.0	22	74	18	92	32	6	5	55	1.49
35003690--35003804	22	4.9	23	75	17	96	32	6	5	55	1.49
35004013--35004055	22	2.0	23	86	13	65	32	2	4	60	1.30
35004013--35004154	23	6.0	22	65	22	74	33	2	6	57	1.36
35004013--35004065	25	2.3	22	83	9	61	32	3	3	60	1.32
35004022--35004140	50	2.5	47	75	14	116	35	2	5	56	1.37
35004262--35004306	14	3.2	14	93	0	72	35	8	17	37	1.81
35006296--35006359	18	3.6	18	80	14	78	56	21	4	17	1.59
35007055--35007188	48	2.8	48	94	1	225	56	15	18	8	1.65
35010282--35010343	19	3.3	19	71	22	51	69	1	9	19	1.25
35010312--35010387	32	2.4	32	82	4	82	72	0	9	18	1.10
35017308--35017370	21	3.0	21	75	6	58	19	33	33	14	1.91
35019372--35019547	46	3.8	46	80	12	225	21	21	28	28	1.98
35019369--35019539	93	1.8	93	96	0	315	21	21	29	28	1.98
35026533--35026613	34	2.2	37	83	16	98	37	0	4	58	1.20
35032095--35032151	29	2.0	28	93	3	96	40	22	19	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35032158--35032339	92	2.0	92	91	2	294	45	9	21	23	1.81
35032764--35032842	22	3.8	22	73	20	89	26	3	58	11	1.50
35032797--35032858	16	3.5	16	69	23	52	24	1	58	16	1.47
35032775--35032862	38	2.3	38	100	0	176	26	2	57	13	1.48
35032775--35032862	19	4.6	20	69	9	76	26	2	57	13	1.48
35033210--35033344	66	2.0	66	100	0	270	25	13	27	34	1.93
35035312--35035402	20	4.2	20	81	13	101	40	0	2	57	1.11
35035534--35035594	32	1.9	32	86	6	88	42	1	3	52	1.27
35035543--35035586	22	1.9	23	86	9	63	40	2	4	52	1.34
35036924--35037004	29	2.8	28	77	14	85	65	0	13	20	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310