genome.fa.s13.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  151  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49553441--49553600	24	6.6	23	71	13	115	31	30	13	23	1.93
49553441--49553600	50	3.3	48	73	12	119	31	30	13	23	1.93
49555535--49555796	39	6.7	40	88	7	337	24	27	22	25	2.00
49561671--49561715	23	2.0	23	100	0	90	26	22	26	24	2.00
49562806--49562907	53	1.9	53	87	0	150	21	25	12	40	1.89
49563636--49563858	119	1.9	120	81	6	274	25	27	21	24	1.99
49563634--49563858	40	5.7	40	83	6	260	25	28	21	24	1.99
49565680--49565826	79	1.9	80	88	1	224	27	27	19	25	1.99
49565680--49565849	40	4.3	40	88	0	216	27	27	20	24	1.99
49565678--49565900	80	2.8	79	80	3	214	26	27	20	25	1.99
49565834--49565911	40	1.9	41	82	10	97	26	28	21	23	1.99
49573495--49573523	9	3.3	9	95	4	51	10	0	0	89	0.48
49580326--49580479	43	3.6	43	78	6	134	33	25	16	24	1.96
49593104--49593277	46	3.8	46	77	13	194	20	19	29	29	1.97
49593099--49593270	93	1.8	93	92	0	290	20	19	29	29	1.97
49597645--49597762	59	2.0	59	88	0	173	26	28	16	28	1.97
49600485--49600544	26	2.2	27	94	5	104	45	6	18	30	1.75
49600971--49601057	45	1.9	45	88	0	129	22	10	24	42	1.85
49604499--49604619	45	2.7	45	88	0	179	23	18	27	31	1.97
49607413--49607613	108	1.8	110	86	4	291	22	25	18	32	1.97
49607366--49607620	55	4.8	54	77	9	242	21	25	17	34	1.96
49617659--49617721	18	3.4	18	74	10	65	33	19	26	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49617973--49618022	23	2.2	23	82	13	59	42	22	14	22	1.88
49618085--49618146	26	2.3	26	86	2	88	20	22	17	38	1.93
49618085--49618170	27	3.2	27	86	1	111	22	18	18	40	1.91
49618127--49618183	27	2.1	27	80	6	62	26	12	22	38	1.89
49618167--49618286	27	4.4	27	81	4	143	39	16	11	32	1.85
49618167--49618603	54	8.3	53	87	6	545	37	16	13	32	1.87
49618167--49618603	81	5.5	81	84	7	558	37	16	13	32	1.87
49618272--49618301	15	2.0	15	100	0	60	26	20	6	46	1.75
49618246--49618328	42	2.0	42	92	0	139	33	19	9	37	1.84
49618288--49618603	27	11.7	27	92	1	490	37	16	13	33	1.88
49621535--49621621	37	2.4	37	84	1	104	37	27	13	20	1.91
49623021--49623061	21	2.0	20	90	4	64	29	0	21	48	1.50
49629047--49629240	43	4.5	43	92	2	300	31	34	23	10	1.89
49629034--49629265	129	1.8	129	88	1	351	31	34	21	12	1.92
49647546--49647586	21	2.0	20	85	4	55	29	0	19	51	1.47
49654564--49654668	55	1.9	55	86	0	147	24	31	22	20	1.98
49655451--49655622	44	3.8	44	78	10	177	24	29	19	27	1.98
49655409--49655667	94	2.8	94	82	6	278	23	29	18	28	1.98
49664130--49664175	23	2.0	23	84	12	60	45	10	6	36	1.65
49664137--49664181	23	2.0	23	82	8	56	40	13	8	37	1.76
49669744--49669768	13	1.9	13	100	0	50	64	8	0	28	1.22
49669993--49670041	10	4.8	10	80	14	55	40	22	22	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49669993--49670041	21	2.4	21	89	3	73	40	22	22	14	1.90
49672093--49672173	42	2.0	41	82	2	99	16	25	1	56	1.47
49672167--49672207	19	2.1	20	95	4	75	0	24	4	70	1.06
49674371--49674395	13	1.9	13	100	0	50	64	8	0	28	1.22
49678138--49678183	23	2.0	23	84	12	60	45	10	6	36	1.65
49678145--49678189	23	2.0	23	82	8	56	40	13	8	37	1.76
49682019--49682082	13	4.9	13	79	7	67	29	6	25	39	1.80
49687810--49687895	27	3.2	26	86	4	118	37	23	22	17	1.94
49690123--49690301	43	4.2	43	86	2	137	35	25	13	25	1.93
49690103--49690300	86	2.3	87	80	3	213	34	24	13	27	1.93
49697935--49698101	43	3.9	43	91	0	271	36	25	12	25	1.91
49702278--49702323	19	2.3	20	92	3	76	47	15	10	26	1.78
49702609--49702770	43	3.8	43	84	2	209	33	24	14	27	1.94
49719661--49719881	40	5.6	40	85	6	281	27	28	22	22	1.99
49719661--49719881	80	2.8	79	88	4	320	27	28	22	22	1.99
49724527--49724576	15	3.4	15	86	2	66	60	12	18	10	1.59
49724538--49724585	15	3.2	15	79	5	53	56	14	16	12	1.68
49739143--49739271	46	2.8	46	88	2	179	29	27	21	21	1.99
49741593--49741740	51	2.9	51	89	2	226	29	13	27	29	1.94
49753089--49753275	60	3.1	61	80	11	174	28	26	20	24	1.99
49754241--49754369	46	2.9	45	82	7	133	26	27	20	24	1.99
49754367--49754680	38	8.1	38	84	4	385	31	24	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49757341--49757388	25	1.9	25	91	0	78	35	25	12	27	1.92
49757425--49757507	20	4.2	20	87	6	132	36	10	20	32	1.87
49757560--49757679	24	5.0	24	83	10	147	31	19	20	28	1.97
49757561--49757658	47	2.1	47	88	5	144	32	18	19	29	1.96
49757872--49757935	31	2.1	31	90	0	101	35	15	23	25	1.94
49759969--49760063	48	2.0	48	83	8	122	20	27	20	32	1.97
49761450--49761679	38	6.1	38	84	0	264	31	23	21	23	1.98
49767281--49767343	15	4.2	15	75	0	63	50	15	19	14	1.77
49783721--49783906	40	4.7	40	88	5	252	24	22	27	26	2.00
49783774--49783939	80	2.1	79	86	5	228	25	20	27	26	1.99
49785871--49785945	38	2.0	38	86	5	107	30	18	26	24	1.98
49785999--49786282	40	7.1	40	89	0	417	24	22	28	25	1.99
49791329--49791442	41	2.7	42	80	10	110	27	28	19	25	1.99
49794116--49794141	12	2.2	12	100	0	52	50	7	0	42	1.31
49794622--49794799	27	6.6	27	83	3	196	27	15	27	29	1.96
49794623--49794778	82	1.9	81	88	3	233	27	15	27	29	1.96
49794619--49794799	82	2.2	81	83	2	229	27	15	27	29	1.96
49794704--49794810	27	3.9	27	85	1	79	27	14	27	30	1.95
49794802--49794842	20	2.0	20	95	0	73	36	21	12	29	1.90
49806307--49806514	85	2.4	84	88	1	299	25	18	23	32	1.97
49806268--49806509	43	5.7	43	72	7	197	26	18	23	31	1.97
49807333--49807358	12	2.2	12	100	0	52	23	15	26	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49811842--49812016	47	3.7	46	78	11	178	19	29	24	27	1.98
49821177--49821201	13	1.9	13	100	0	50	8	36	32	24	1.84
49821911--49822032	44	2.7	46	83	6	151	22	29	19	27	1.98
49829207--49829381	40	4.4	40	94	0	305	21	18	32	27	1.97
49829207--49829381	80	2.2	80	98	0	341	21	18	32	27	1.97
49837353--49837527	40	4.4	40	99	0	341	21	20	30	28	1.98
49837353--49837551	80	2.5	80	92	0	272	22	21	28	27	1.99
49845502--49845597	41	2.4	40	92	3	165	18	19	31	30	1.96
49851816--49851986	90	1.9	90	85	2	236	27	28	19	25	1.99
49851909--49852001	42	2.2	44	77	14	106	23	31	19	25	1.98
49852551--49852583	16	2.1	16	94	0	57	21	18	6	54	1.64
49859335--49859507	46	3.7	46	77	13	192	29	28	20	21	1.98
49859340--49859510	93	1.8	93	92	0	288	28	29	21	21	1.98
49859923--49859982	30	2.0	30	93	0	102	31	25	8	35	1.85
49874434--49874656	53	4.2	54	76	6	204	17	25	18	38	1.92
49881172--49881357	79	2.3	82	82	6	229	24	27	23	24	2.00
49881172--49881357	40	4.6	41	82	7	204	24	27	23	24	2.00
49881938--49882244	150	2.0	150	96	1	562	21	21	14	42	1.89
49882089--49883094	517	1.9	515	98	0	1949	26	23	14	35	1.94
49884681--49884720	21	1.9	21	100	0	80	15	10	32	42	1.79
49889314--49889428	27	4.3	26	88	4	140	20	22	20	35	1.96
49891523--49892381	49	17.5	49	99	0	1684	24	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49893315--49893428	39	2.9	39	81	2	122	22	22	28	25	1.99
49897919--49898160	43	5.6	43	94	0	403	12	22	33	31	1.91
49897900--49898171	86	3.2	86	91	1	433	13	21	33	31	1.92
49898486--49898595	45	2.5	42	81	11	123	24	21	26	27	1.99
49898536--49898619	42	2.0	43	88	4	125	22	23	30	22	1.99
49901324--49901368	15	3.0	15	80	9	56	11	15	17	55	1.68
49903836--49903975	49	2.8	50	81	5	178	25	20	26	27	1.99
49904972--49905193	40	5.6	40	82	5	254	24	22	27	25	2.00
49904976--49905226	79	3.2	77	79	7	238	26	21	26	25	1.99
49905956--49906024	35	2.0	35	94	2	122	46	7	21	24	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310