genome.fa.s13.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  111  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35388598--35388702	40	2.6	39	92	1	165	24	10	15	49	1.76
35392205--35392309	40	2.6	39	92	1	165	24	10	15	49	1.76
35392575--35392617	21	2.0	22	81	4	52	27	44	2	25	1.66
35392650--35392682	14	2.3	15	94	5	59	36	33	0	30	1.58
35393096--35393240	41	3.5	41	87	2	184	31	24	19	25	1.98
35393332--35393458	40	3.2	39	78	9	132	25	21	25	28	1.99
35398213--35398245	16	2.1	16	100	0	66	33	30	6	30	1.82
35398380--35398557	60	2.9	58	78	9	169	41	12	4	41	1.64
35411450--35411504	26	2.3	23	84	9	65	56	3	0	40	1.17
35413561--35413647	37	2.3	38	90	6	131	28	4	12	54	1.58
35413576--35413638	19	3.4	19	66	27	53	28	6	11	53	1.60
35415059--35415087	14	2.1	14	100	0	58	6	31	34	27	1.83
35417485--35417653	46	3.7	46	82	9	170	23	30	17	27	1.97
35417240--35417660	47	8.9	47	72	12	224	26	30	16	27	1.97
35425113--35425666	48	11.6	48	77	11	473	24	29	17	28	1.98
35425158--35425666	191	2.7	191	90	2	783	24	29	17	28	1.98
35425113--35425666	146	3.9	142	78	11	444	24	29	17	28	1.98
35425157--35425724	143	4.0	141	76	10	433	25	29	17	27	1.97
35428918--35428976	30	1.9	31	89	3	93	30	23	13	32	1.93
35433739--35433781	17	2.3	18	84	15	52	46	4	6	41	1.51
35443830--35444042	106	2.0	106	98	0	408	47	15	3	34	1.61
35445049--35445122	37	2.0	37	94	0	130	45	10	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35465725--35465914	41	4.6	41	84	2	231	35	15	27	21	1.93
35465790--35465893	20	5.1	20	64	13	68	38	15	25	20	1.92
35465725--35465914	82	2.3	82	87	1	256	35	15	27	21	1.93
35473104--35473158	22	2.5	21	82	11	74	34	9	16	40	1.80
35478366--35478537	93	1.8	93	92	0	290	29	29	20	21	1.98
35478359--35478534	46	3.8	46	77	12	189	30	28	19	21	1.98
35478410--35478546	47	3.0	46	74	16	131	30	29	18	21	1.97
35484579--35484659	38	2.1	38	100	0	162	27	19	19	33	1.96
35486842--35486947	55	1.9	55	86	7	153	22	31	21	24	1.98
35496532--35496588	28	2.0	28	100	0	114	26	17	14	42	1.87
35496891--35496978	45	2.0	45	97	0	167	38	25	12	23	1.90
35496891--35496957	21	3.0	21	66	26	57	38	25	11	23	1.89
35496907--35496983	21	3.5	21	70	16	66	38	25	12	22	1.90
35521910--35522085	46	3.8	46	78	10	205	22	21	26	28	1.99
35521908--35522078	93	1.8	93	93	0	297	23	22	26	28	1.99
35525008--35525093	15	5.7	15	86	4	120	11	17	12	58	1.63
35527401--35527466	29	2.2	29	91	2	105	33	15	27	24	1.95
35527517--35527692	46	3.8	46	78	10	187	22	21	27	28	1.99
35527514--35527684	93	1.8	93	89	0	270	22	22	28	27	1.99
35528332--35528409	37	2.1	37	97	0	147	41	10	23	25	1.86
35539366--35539546	40	4.6	40	90	2	276	25	25	23	24	2.00
35542552--35543080	265	2.0	265	95	0	959	28	24	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35543014--35543436	228	1.9	228	92	0	711	31	22	18	26	1.97
35546182--35546235	24	2.2	24	84	12	67	27	38	16	16	1.90
35551853--35551978	40	3.2	40	94	1	209	26	27	23	23	2.00
35553899--35554020	55	2.2	55	79	0	127	23	20	31	23	1.98
35555530--35555583	23	2.2	25	83	6	67	72	1	1	24	1.05
35562767--35562814	23	2.1	23	88	0	69	27	10	16	45	1.80
35563219--35563267	25	2.0	25	83	0	62	24	24	0	51	1.49
35569782--35569889	26	4.2	26	95	0	180	33	7	23	36	1.83
35571392--35572210	54	15.2	54	99	0	1611	14	22	24	38	1.92
35571392--35572222	27	30.8	27	79	7	623	15	22	23	38	1.92
35577124--35577225	51	2.0	51	98	0	195	27	10	33	28	1.90
35580309--35580389	28	3.0	26	85	3	72	28	24	11	35	1.90
35580323--35580394	28	2.6	28	90	0	108	30	27	11	30	1.91
35585020--35585127	26	4.2	26	93	0	189	32	8	24	35	1.85
35586749--35587096	27	12.9	26	85	7	462	16	24	23	34	1.95
35586749--35587096	54	6.4	54	99	0	678	16	24	23	34	1.95
35587462--35587926	27	17.2	26	85	7	615	16	23	24	35	1.95
35587462--35587926	54	8.6	54	98	0	887	16	23	24	35	1.95
35586383--35587809	713	2.0	713	98	0	2773	24	19	22	33	1.97
35589854--35589997	46	3.1	46	75	13	177	24	17	27	31	1.97
35595128--35595179	24	2.1	26	82	13	65	40	15	0	44	1.46
35596840--35596880	21	2.0	21	90	9	66	48	2	4	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35605190--35605263	38	2.0	37	91	2	121	37	31	10	20	1.87
35613270--35613358	45	2.0	45	86	4	126	30	15	24	29	1.96
35613334--35613597	143	1.8	143	80	0	321	30	20	21	26	1.98
35618488--35618628	40	3.5	40	86	6	178	29	26	19	24	1.99
35620563--35620592	15	2.0	15	100	0	60	33	13	6	46	1.69
35622936--35623004	31	2.2	32	92	2	113	55	2	5	36	1.39
35625215--35625385	93	1.8	93	94	0	306	27	29	21	21	1.98
35625207--35625382	46	3.8	46	81	10	214	28	29	21	21	1.98
35627773--35627861	30	3.0	30	79	11	94	56	15	17	10	1.67
35627773--35627855	15	5.6	14	73	10	58	55	16	18	9	1.68
35627784--35627861	15	5.2	15	75	9	70	55	15	17	11	1.69
35630776--35630864	46	1.9	46	88	0	133	29	30	21	19	1.97
35645616--35645852	134	1.8	130	87	6	354	37	4	8	48	1.55
35645755--35645798	20	2.2	20	87	0	61	45	0	4	50	1.22
35645746--35645799	21	2.6	21	76	8	56	40	0	5	53	1.24
35645744--35646033	145	2.0	145	81	8	340	42	3	10	44	1.54
35646929--35646987	27	2.2	27	93	0	100	38	11	5	44	1.63
35647036--35647142	52	2.1	52	96	0	196	39	3	9	47	1.54
35649085--35649262	27	6.6	27	84	3	205	29	28	15	26	1.96
35649106--35649261	82	1.9	81	88	3	233	29	28	15	26	1.96
35660746--35660788	21	2.0	21	100	0	86	25	13	27	32	1.94
35663558--35663707	43	3.5	43	75	13	139	28	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35687211--35687383	45	3.9	46	85	7	216	24	29	23	22	1.99
35687376--35687611	38	6.2	38	92	1	348	29	26	22	21	1.99
35691967--35692011	23	2.0	22	95	0	72	42	35	11	8	1.72
35694492--35694569	33	2.4	32	80	6	84	26	24	16	32	1.96
35718129--35718168	3	13.0	3	84	5	53	40	0	0	60	0.97
35719695--35719752	30	2.0	30	96	3	109	25	17	25	31	1.97
35743499--35743706	40	5.2	40	85	4	235	23	23	27	25	2.00
35743495--35743706	80	2.7	80	81	3	277	24	22	26	25	2.00
35760110--35760259	41	3.7	41	77	1	167	30	27	20	22	1.98
35765137--35765202	33	2.0	33	100	0	132	27	21	9	42	1.83
35776926--35777004	29	2.7	29	86	5	106	27	32	15	24	1.95
35778090--35778172	41	2.0	41	100	0	166	32	14	19	33	1.92
35778347--35778425	37	2.1	37	90	0	122	25	31	18	24	1.98
35778544--35779240	47	14.7	47	93	0	1133	29	29	8	32	1.87
35778995--35779116	22	5.3	22	63	21	61	27	31	9	31	1.89
35779913--35780020	54	2.0	54	98	0	207	30	23	7	38	1.82
35786660--35786751	47	2.0	47	97	0	175	31	8	22	36	1.85
35791293--35791328	18	2.0	18	100	0	72	44	5	11	38	1.63
35794669--35794715	23	2.0	23	95	0	85	25	2	27	44	1.65
35794830--35794903	20	3.8	20	72	21	75	31	0	24	44	1.54
35797427--35797460	16	2.1	16	100	0	68	32	26	11	29	1.92
35797465--35797494	14	2.1	14	100	0	60	36	26	0	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35799730--35799759	15	2.0	15	93	0	51	30	0	3	66	1.07
35801049--35801137	42	2.1	42	87	0	124	50	12	6	30	1.65
35801162--35801201	19	2.2	18	95	4	71	42	15	2	40	1.60
35805003--35805091	42	2.1	42	87	0	124	50	13	7	28	1.69
35805108--35805155	19	2.6	18	90	9	78	45	14	2	37	1.57
35810545--35810849	46	6.6	46	86	0	378	20	24	13	41	1.88
35810545--35810839	92	3.2	92	88	0	419	20	24	13	42	1.88
35810545--35810849	138	2.2	138	87	1	441	20	24	13	41	1.88
35818719--35818770	20	2.6	20	96	0	95	26	30	28	13	1.94
35820690--35820758	6	11.5	6	83	6	59	21	8	11	57	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310