genome.fa.s13.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  157  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51447849--51447995	44	3.3	43	73	12	138	19	21	22	36	1.95
51459435--51459496	24	2.5	25	76	10	65	54	4	4	35	1.43
51459481--51459505	11	2.3	11	100	0	50	56	8	0	36	1.29
51459538--51459578	18	2.2	18	86	4	55	53	12	4	29	1.58
51459958--51459999	20	2.2	20	87	12	61	61	0	4	33	1.17
51463144--51463184	15	2.8	15	79	17	50	60	2	4	31	1.30
51463415--51463448	13	2.7	13	86	4	52	58	0	5	35	1.22
51463415--51463451	12	3.0	12	84	7	56	59	0	5	35	1.20
51463407--51463474	25	2.8	24	74	10	59	61	0	4	33	1.16
51463411--51463475	12	5.3	12	76	10	51	60	0	4	35	1.18
51465118--51465539	44	9.6	44	84	3	476	29	26	13	31	1.93
51465119--51465539	132	3.2	131	83	4	533	29	26	13	31	1.93
51477434--51477474	15	2.8	15	79	17	50	60	2	4	31	1.30
51477721--51477784	30	2.1	28	78	18	67	62	0	3	34	1.11
51477724--51477764	21	2.0	21	85	9	57	63	0	4	31	1.15
51483365--51483405	15	2.8	15	79	17	50	60	2	4	31	1.30
51483411--51483509	39	2.6	37	75	15	94	55	2	9	33	1.43
51483638--51483671	13	2.7	13	86	4	52	58	0	5	35	1.22
51483638--51483674	12	3.0	12	84	7	56	59	0	5	35	1.20
51483630--51483697	25	2.8	24	74	10	59	61	0	4	33	1.16
51483634--51483698	12	5.3	12	76	10	51	60	0	4	35	1.18
51486886--51486938	22	2.4	22	93	0	88	30	52	3	13	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51487215--51487268	26	2.1	25	86	10	74	9	5	3	81	0.97
51487211--51487268	13	4.5	13	72	20	50	8	6	3	81	0.98
51487211--51487256	19	2.4	19	77	3	56	8	6	4	80	1.01
51488182--51488251	3	22.3	3	80	8	77	30	7	2	60	1.38
51488253--51488304	20	2.7	19	82	11	54	23	13	3	59	1.50
51488602--51488632	15	2.1	15	100	0	62	32	6	0	61	1.21
51488714--51488767	3	18.3	3	78	3	56	29	5	0	64	1.16
51488972--51489369	109	3.7	109	98	0	751	32	20	16	30	1.95
51493772--51493825	24	2.2	24	83	0	72	72	0	18	9	1.11
51495559--51495893	55	6.1	55	100	0	670	27	20	18	34	1.96
51497220--51497306	43	2.0	43	100	0	174	45	17	9	27	1.78
51497231--51497316	43	2.1	39	85	10	111	48	18	5	26	1.70
51500072--51500615	134	4.1	134	98	0	1029	26	20	24	28	1.99
51500551--51500708	45	3.4	44	69	17	131	29	20	22	27	1.98
51500530--51500710	95	1.9	95	98	0	353	29	22	20	28	1.98
51500396--51500844	229	2.0	229	96	1	839	26	21	23	28	1.99
51500625--51501274	134	4.8	134	96	1	1169	26	20	23	28	1.99
51500262--51500978	363	2.0	363	98	1	1375	26	21	24	28	1.99
51500128--51501112	497	2.0	497	98	0	1909	26	21	24	28	1.99
51501237--51501495	44	5.9	44	74	4	198	29	16	23	30	1.96
51501282--51501525	132	1.9	131	83	2	312	30	16	23	29	1.96
51501454--51501891	229	1.9	229	92	0	734	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51502225--51502277	22	2.4	22	93	0	88	30	52	3	13	1.57
51502554--51502607	26	2.1	25	86	10	74	9	5	3	81	0.97
51502550--51502607	13	4.5	13	72	20	50	8	6	3	81	0.98
51502550--51502595	19	2.4	19	77	3	56	8	6	4	80	1.01
51504706--51504820	55	2.1	55	100	0	230	26	21	18	33	1.96
51506147--51506233	43	2.0	43	100	0	174	45	17	9	27	1.78
51506158--51506243	43	2.1	39	85	10	111	48	18	5	26	1.70
51507095--51507166	37	1.9	37	88	5	110	30	16	12	40	1.86
51507651--51507675	12	2.1	12	100	0	50	56	0	0	44	0.99
51509212--51509263	25	2.1	25	100	0	104	28	11	36	23	1.90
51510043--51510080	16	2.4	16	86	4	51	68	5	0	26	1.11
51510342--51510410	19	3.3	20	75	18	61	60	2	4	31	1.31
51510351--51510461	10	11.6	10	68	20	69	57	0	5	36	1.28
51510351--51510461	12	9.1	12	68	17	50	57	0	5	36	1.28
51511070--51511127	17	3.4	17	97	0	107	17	44	29	8	1.78
51515187--51515269	20	4.2	20	76	6	96	24	14	34	26	1.94
51516716--51516748	13	2.5	13	95	0	57	12	3	3	81	0.91
51523012--51523110	28	3.5	28	88	1	135	29	13	25	32	1.93
51525146--51526001	44	19.4	44	86	1	1016	30	26	13	29	1.94
51536544--51536576	16	2.1	16	88	5	50	66	6	0	27	1.15
51536845--51536910	21	3.2	20	76	17	64	59	3	4	33	1.33
51536854--51536966	10	10.6	10	68	24	63	56	0	6	36	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51536895--51536964	25	2.8	25	81	12	83	55	0	5	38	1.24
51536923--51536975	20	2.8	19	78	16	58	60	1	1	35	1.19
51539021--51539053	16	2.1	16	88	5	50	66	6	0	27	1.15
51539322--51539387	21	3.2	20	76	17	64	59	3	4	33	1.33
51539331--51539443	10	10.6	10	68	24	63	56	0	6	36	1.30
51539372--51539441	25	2.8	25	81	12	83	55	0	5	38	1.24
51539400--51539452	20	2.8	19	78	16	58	60	1	1	35	1.19
51542754--51542883	47	2.8	47	85	2	154	23	18	26	32	1.97
51547167--51547266	49	2.0	49	83	7	123	33	15	10	42	1.80
51552961--51553025	30	2.1	31	83	11	80	50	12	7	29	1.67
51552960--51553032	31	2.4	29	78	13	76	46	13	8	31	1.73
51558091--51558129	15	2.6	15	88	8	53	0	0	20	79	0.73
51560087--51560172	43	2.0	43	90	0	136	19	20	31	27	1.97
51562585--51562701	38	3.1	38	77	1	119	15	15	32	36	1.89
51567932--51568002	35	2.0	35	97	0	133	29	9	22	38	1.86
51574739--51574776	18	2.1	19	85	5	51	31	7	7	52	1.59
51575456--51575503	24	2.0	24	95	0	87	35	25	14	25	1.94
51578674--51578844	43	4.0	44	75	8	172	26	14	25	33	1.94
51584847--51584880	16	2.1	17	88	5	52	14	0	8	76	1.01
51586580--51586614	17	2.0	18	88	5	54	20	17	40	22	1.92
51587359--51587394	17	2.1	17	89	5	54	11	22	44	22	1.84
51592424--51592461	20	1.9	20	88	0	58	36	31	13	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51602845--51603249	131	3.1	129	83	3	355	26	18	18	37	1.93
51602954--51603313	130	2.7	131	86	4	476	26	18	18	36	1.94
51605842--51605874	15	2.2	15	89	10	50	60	12	0	27	1.32
51617705--51617746	20	2.0	21	86	4	59	52	16	9	21	1.72
51623567--51623616	21	2.4	21	96	0	91	56	14	4	26	1.56
51630037--51630128	24	3.8	24	69	2	76	22	21	21	33	1.97
51630042--51630183	49	2.9	49	87	3	187	24	23	18	33	1.96
51632069--51632118	21	2.4	21	96	0	91	26	4	14	56	1.56
51636653--51636758	37	2.9	37	90	2	162	25	22	16	35	1.94
51636721--51636995	52	5.2	52	97	0	505	26	23	14	35	1.94
51641071--51641112	20	2.0	21	86	4	59	21	9	16	52	1.72
51644277--51644365	42	2.1	42	89	0	133	50	13	6	29	1.67
51644390--51644443	19	2.8	19	100	0	108	42	16	3	37	1.66
51648249--51648337	42	2.1	42	87	0	124	48	14	8	28	1.74
51648362--51648401	19	2.2	18	95	4	71	42	15	2	40	1.60
51653620--51653731	26	4.3	26	76	13	104	48	0	10	40	1.44
51653671--51654184	105	4.9	106	83	5	529	44	1	13	40	1.52
51653954--51654099	27	5.5	27	64	18	65	44	2	13	40	1.55
51653660--51654184	204	2.5	203	83	6	603	44	1	13	40	1.52
51655424--51655448	6	4.2	6	100	0	50	36	0	48	16	1.46
51657233--51657370	53	2.6	52	86	3	179	27	15	27	28	1.96
51660123--51660154	12	2.6	13	90	9	50	50	25	6	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51660610--51660761	42	3.6	41	78	8	126	27	26	20	25	1.99
51660605--51660761	86	1.8	85	87	4	235	27	27	20	24	1.99
51668440--51668526	43	2.0	43	84	8	115	27	28	19	24	1.98
51682429--51682578	52	2.9	52	83	5	169	26	17	26	30	1.97
51684172--51684772	295	2.0	296	98	0	1152	39	10	17	32	1.84
51687372--51687433	27	2.3	27	86	5	81	22	24	20	32	1.98
51701785--51701869	40	2.2	40	84	2	109	28	31	22	17	1.97
51701940--51702095	47	3.3	46	86	4	199	27	29	9	33	1.89
51713231--51713345	55	2.1	55	85	3	151	18	26	31	23	1.97
51714980--51715019	21	1.9	21	94	0	71	2	57	17	22	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310