genome.fa.s13.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  169  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55386804--55386978	91	1.9	93	84	7	239	29	27	14	28	1.95
55397654--55397692	3	13.0	3	100	0	78	66	0	0	33	0.92
55403039--55403182	46	3.1	46	73	14	143	29	29	20	21	1.98
55406624--55406698	37	2.0	37	89	0	114	38	21	8	32	1.82
55406912--55407177	47	5.7	46	76	8	166	24	28	18	28	1.98
55406914--55407083	47	3.7	47	81	8	188	24	30	18	27	1.98
55409506--55409574	31	2.2	31	89	0	102	46	15	2	34	1.61
55419843--55419881	10	3.8	10	83	6	51	58	0	0	41	0.98
55427457--55427501	20	2.2	20	88	7	65	33	26	4	35	1.77
55428864--55428931	25	2.6	25	83	4	82	39	7	14	38	1.74
55436550--55436648	18	5.5	18	75	9	94	40	16	14	29	1.87
55436532--55436648	36	3.3	35	75	10	103	40	17	13	29	1.87
55436532--55436650	54	2.2	54	84	1	150	39	17	13	29	1.88
55438795--55438864	29	2.4	29	76	4	70	47	20	7	25	1.75
55441866--55441978	56	2.0	56	94	0	199	44	14	15	25	1.85
55460663--55460700	20	1.9	20	89	10	60	26	0	7	65	1.19
55463983--55464050	20	3.5	20	76	9	61	61	0	2	35	1.11
55464878--55464916	4	9.8	4	100	0	78	51	23	0	25	1.49
55468425--55468467	20	2.2	20	95	0	77	37	11	13	37	1.82
55469691--55469837	43	3.4	43	76	10	140	28	23	20	27	1.99
55469968--55470016	25	2.0	25	91	0	80	65	22	0	12	1.26
55474215--55474342	41	3.1	41	81	0	166	21	21	17	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55474215--55474392	82	2.2	82	80	6	191	20	23	17	39	1.92
55485023--55485061	12	3.3	12	78	7	53	17	12	0	69	1.19
55486607--55486646	14	2.9	14	84	0	53	32	7	17	42	1.77
55486615--55486681	35	1.9	35	87	3	100	31	10	13	44	1.77
55486630--55486669	20	2.0	20	85	0	53	27	12	12	47	1.77
55493882--55493948	23	3.0	22	74	8	64	50	4	4	40	1.43
55499203--55499253	19	2.5	21	84	6	61	33	5	5	54	1.48
55499608--55499725	3	40.3	3	67	8	55	33	10	1	55	1.44
55503186--55503244	31	1.9	31	85	0	82	40	20	16	22	1.91
55503249--55503371	59	2.1	60	81	4	142	36	16	17	29	1.92
55509051--55509263	45	4.9	44	85	5	215	24	27	21	26	1.99
55509093--55509266	45	3.9	45	87	3	230	25	27	22	24	2.00
55512947--55512996	15	3.4	14	81	10	55	46	2	2	50	1.24
55515704--55515818	43	2.7	43	80	12	148	23	18	26	31	1.97
55520946--55520970	12	2.1	12	100	0	50	12	16	16	56	1.68
55524994--55525032	20	2.0	20	85	10	53	51	17	10	20	1.74
55531217--55531246	14	2.1	14	93	0	51	30	13	33	23	1.93
55537093--55537131	20	2.0	20	94	0	69	28	20	12	38	1.89
55539568--55539705	60	2.3	58	75	9	134	37	7	18	35	1.81
55543989--55544029	21	2.0	21	90	0	64	29	21	29	19	1.98
55545935--55545968	16	2.1	16	88	0	50	50	14	17	17	1.79
55550223--55550293	36	1.9	37	82	2	90	42	7	18	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55560510--55560613	51	2.0	51	96	0	190	40	5	12	41	1.67
55560524--55560601	23	3.2	23	63	16	57	35	5	14	44	1.67
55562288--55562314	14	1.9	14	100	0	54	29	22	0	48	1.51
55568411--55568664	38	6.2	38	76	15	238	30	25	14	29	1.95
55568411--55568664	123	2.1	123	94	0	454	30	25	14	29	1.95
55568574--55568704	48	2.8	47	88	1	190	29	21	16	32	1.95
55573098--55573304	47	5.0	38	71	18	162	29	25	15	29	1.96
55573042--55573304	85	3.1	85	97	0	490	30	23	15	30	1.95
55573136--55573346	47	4.7	47	80	10	260	30	23	15	30	1.95
55573216--55573346	48	2.8	47	89	1	199	29	22	16	32	1.95
55581582--55581615	16	2.1	16	88	0	50	67	2	8	20	1.31
55590039--55590133	28	3.4	28	74	0	91	35	10	14	38	1.81
55590535--55590573	19	2.2	19	86	9	55	23	20	15	41	1.90
55592093--55592129	10	3.8	10	92	3	58	64	0	0	35	0.94
55592442--55592481	20	2.0	20	85	9	55	25	5	7	62	1.42
55593414--55593442	14	2.0	15	93	6	51	44	0	0	55	0.99
55603137--55603170	11	3.0	12	87	12	54	32	0	0	67	0.91
55603292--55603355	30	2.1	31	88	8	96	56	10	3	29	1.49
55610552--55610582	10	2.9	11	90	9	55	64	0	0	35	0.94
55628608--55628669	31	2.0	31	100	0	124	32	16	19	32	1.94
55636582--55636670	44	2.0	44	82	4	108	38	22	17	21	1.94
55637010--55637057	24	2.0	25	95	4	89	50	8	20	20	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55638182--55638293	51	2.2	53	83	6	140	20	18	18	41	1.90
55638275--55638301	6	4.5	6	100	0	54	18	18	14	48	1.82
55640303--55640344	18	2.3	19	80	12	52	33	0	2	64	1.07
55644500--55644550	26	2.0	26	100	0	102	27	29	11	31	1.92
55644889--55644936	25	2.0	24	91	4	78	64	8	8	18	1.46
55646056--55646164	49	2.2	50	79	11	118	30	27	11	31	1.91
55648109--55648217	48	2.3	48	85	0	137	19	16	26	37	1.93
55648354--55648406	18	2.9	18	80	0	61	33	9	16	39	1.81
55652699--55652731	17	1.9	18	88	11	52	42	12	0	45	1.41
55655988--55656013	13	2.0	13	100	0	52	84	0	0	15	0.62
55655995--55656063	26	2.6	27	78	15	72	63	4	0	31	1.14
55656002--55656065	27	2.6	24	75	20	60	59	6	0	34	1.23
55658254--55658293	20	2.0	20	85	9	55	22	7	2	67	1.28
55658396--55658468	37	2.0	37	89	10	114	17	24	5	52	1.66
55659059--55659092	18	1.9	18	94	5	61	26	11	5	55	1.58
55659248--55659280	12	2.8	12	95	0	57	24	6	0	69	1.10
55662035--55662085	5	9.4	5	81	14	57	19	0	1	78	0.85
55662035--55662092	11	5.2	11	77	10	64	20	0	1	77	0.86
55662042--55662097	15	3.9	15	82	17	59	21	0	1	76	0.87
55662034--55662095	18	3.6	18	82	10	76	20	0	1	77	0.85
55663645--55663684	20	2.0	20	85	9	55	25	5	2	67	1.23
55665411--55665529	58	2.0	59	98	1	231	23	13	31	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55665430--55665520	28	3.2	28	66	22	80	25	15	31	27	1.95
55665471--55665611	49	2.9	49	91	0	219	23	13	30	32	1.93
55668773--55668975	46	4.3	48	88	7	265	35	14	21	28	1.92
55668707--55668975	98	2.7	98	93	0	457	34	14	22	28	1.93
55668939--55669084	37	4.0	37	93	1	242	36	16	21	24	1.94
55669577--55669610	18	1.9	18	94	5	61	26	11	5	55	1.58
55671682--55671839	68	2.2	70	86	5	212	13	31	5	50	1.63
55681626--55681720	17	5.3	19	87	9	146	36	13	11	37	1.81
55681625--55681729	54	2.0	54	90	3	169	39	12	11	37	1.79
55682032--55682231	45	4.5	45	84	1	258	25	28	14	32	1.95
55682032--55682215	89	2.1	90	87	1	262	26	28	14	30	1.95
55682245--55682626	78	4.8	78	85	8	516	25	23	18	32	1.97
55682165--55682626	166	2.8	165	89	6	671	25	24	17	32	1.97
55682373--55683108	376	2.0	374	92	1	1222	27	22	17	32	1.97
55682367--55682924	298	1.9	287	83	7	721	27	23	17	31	1.97
55682790--55682977	78	2.4	78	90	3	315	24	23	18	34	1.96
55682954--55683239	131	2.2	131	92	0	464	27	22	18	31	1.97
55687636--55687685	25	2.0	25	88	0	73	16	38	10	36	1.82
55688975--55689000	5	5.2	5	100	0	52	42	0	19	38	1.51
55691784--55691821	17	2.5	15	87	12	51	34	15	10	39	1.82
55691783--55691815	17	1.9	17	100	0	66	36	12	12	39	1.80
55691942--55691981	21	2.0	20	85	5	53	10	2	15	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55692425--55692497	38	1.9	38	83	5	94	38	6	15	39	1.74
55693978--55694074	32	3.0	32	100	0	194	47	0	9	43	1.35
55694004--55694066	20	3.5	20	68	31	70	46	0	9	44	1.36
55699105--55699221	25	4.9	23	72	17	78	58	0	6	34	1.24
55700857--55701508	206	3.2	205	87	4	909	29	21	17	31	1.96
55701458--55701545	44	2.0	44	100	0	176	29	20	15	34	1.94
55701252--55701748	250	2.0	250	91	0	805	28	21	18	31	1.96
55713426--55713542	25	4.9	23	72	17	78	58	0	6	34	1.24
55720998--55721047	25	2.0	25	100	0	100	24	16	4	56	1.57
55722481--55722616	42	3.2	42	83	7	141	25	17	25	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310