genome.fa.s13.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  128  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41105767--41105808	11	4.1	11	79	14	54	16	28	33	21	1.95
41111032--41111102	24	3.0	24	81	6	81	7	35	36	21	1.80
41111619--41112403	43	18.5	43	87	2	1032	15	34	32	16	1.91
41111620--41112402	212	3.7	211	86	4	1046	15	34	33	16	1.91
41111619--41112403	255	3.1	256	85	1	1069	15	34	32	16	1.91
41117609--41117699	46	2.0	46	93	0	155	24	15	25	35	1.94
41119850--41120017	85	2.1	77	88	11	243	37	7	28	26	1.84
41121184--41121368	40	4.7	40	80	7	191	24	22	27	24	2.00
41121184--41121357	79	2.2	80	82	8	212	23	23	28	24	2.00
41121237--41121401	79	2.1	79	82	6	192	26	21	27	24	1.99
41125871--41125911	20	2.0	21	85	4	57	46	24	0	29	1.53
41133552--41133729	90	2.0	90	83	2	223	28	25	19	27	1.98
41134420--41134444	10	2.5	10	100	0	50	76	16	0	8	1.02
41140226--41140345	48	2.7	44	82	7	136	31	30	14	24	1.94
41140231--41140404	90	1.9	90	82	4	217	29	27	16	27	1.97
41143811--41143871	30	2.0	30	90	0	95	31	24	8	36	1.85
41145782--41146156	29	12.9	29	77	8	199	22	26	13	37	1.91
41145913--41146156	116	2.1	115	84	6	314	23	27	11	37	1.90
41157147--41157215	33	2.1	33	97	0	129	26	13	23	37	1.91
41162793--41163613	93	8.8	93	99	0	1579	29	26	19	23	1.98
41171020--41171842	93	8.8	93	99	0	1601	30	27	19	23	1.98
41174014--41174201	51	3.8	48	80	9	198	27	28	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41176359--41176481	43	2.9	42	75	7	131	23	17	24	34	1.95
41181504--41181534	16	1.9	16	93	0	53	32	35	12	19	1.90
41186543--41186873	48	6.9	48	74	5	274	28	19	27	24	1.98
41186540--41186873	96	3.5	96	82	3	395	28	19	28	24	1.98
41189452--41189644	40	4.8	40	84	5	212	25	21	26	26	1.99
41189452--41189670	40	5.5	40	81	6	205	26	21	26	26	1.99
41197342--41197519	40	4.5	40	90	3	245	23	23	28	25	2.00
41205381--41205565	40	4.6	40	80	8	207	24	23	28	23	2.00
41205381--41205565	80	2.3	81	87	6	252	24	23	28	23	2.00
41210236--41210459	40	5.6	40	91	1	308	24	20	28	26	1.99
41210197--41210459	80	3.3	80	85	3	318	23	20	28	26	1.99
41210197--41210459	120	2.2	120	82	4	318	23	20	28	26	1.99
41218199--41218408	40	5.3	39	89	4	242	25	21	27	25	1.99
41218146--41218408	120	2.2	120	82	4	309	25	21	27	25	1.99
41218147--41218443	80	3.7	80	81	6	230	26	21	27	24	1.99
41224896--41224934	19	2.1	19	95	0	69	38	10	17	33	1.84
41229803--41229909	43	2.5	43	83	6	119	30	26	17	25	1.97
41232725--41232785	31	2.0	31	96	0	113	49	1	26	22	1.59
41233278--41233363	40	2.2	40	87	4	120	24	24	25	25	2.00
41239160--41239770	305	2.0	305	86	1	841	29	20	24	25	1.99
41240714--41240805	40	2.3	40	87	5	125	25	23	26	25	2.00
41251659--41251791	66	2.0	66	92	0	221	39	11	24	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41257109--41257255	73	2.0	73	90	0	231	40	13	25	19	1.89
41257245--41257289	20	2.2	20	92	0	72	53	6	15	24	1.66
41261199--41261370	46	3.7	48	79	11	164	27	19	29	23	1.98
41262098--41262146	22	2.2	22	88	0	71	32	8	34	24	1.85
41262600--41262638	21	1.9	21	89	5	62	12	35	30	20	1.90
41269888--41269959	35	2.1	35	91	0	117	43	19	22	15	1.88
41290945--41291007	27	2.3	27	83	0	81	38	31	14	15	1.88
41293899--41293937	17	2.3	17	81	0	51	28	25	17	28	1.98
41297854--41297906	26	2.0	26	82	7	63	22	16	20	39	1.92
41298782--41298881	24	4.2	24	86	6	132	20	38	6	36	1.77
41305409--41305461	26	2.0	26	85	7	72	20	16	22	39	1.92
41306710--41306810	24	4.2	24	85	7	125	20	37	4	36	1.75
41312886--41312983	27	3.5	28	90	2	135	26	13	28	31	1.94
41312914--41312996	27	3.0	27	87	5	96	30	12	25	32	1.92
41312886--41312997	28	4.0	27	83	6	98	28	12	25	33	1.92
41317745--41317801	28	2.0	28	100	0	114	17	29	14	38	1.89
41323427--41323585	47	3.4	47	85	0	228	31	8	30	29	1.86
41330390--41330543	38	3.9	39	83	6	116	31	27	21	19	1.97
41330390--41330525	38	3.5	37	87	6	166	32	27	22	18	1.97
41340485--41341587	40	27.6	40	97	0	2005	27	27	20	24	1.99
41347863--41347913	13	3.7	13	92	7	75	13	9	0	76	1.02
41348212--41348255	22	2.0	22	95	0	79	34	4	36	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41349053--41349111	31	1.9	30	89	3	91	27	37	13	22	1.91
41354509--41354619	55	2.0	55	91	3	179	21	18	27	31	1.97
41358816--41358877	21	3.2	21	61	25	55	33	24	14	27	1.94
41358817--41358887	36	2.0	36	100	0	142	35	22	16	25	1.95
41373691--41373794	40	2.5	43	79	6	115	29	13	27	28	1.94
41398623--41398710	46	1.9	46	88	0	122	27	30	22	19	1.98
41410041--41410212	93	1.8	93	94	0	308	28	29	20	20	1.98
41410034--41410209	46	3.8	46	79	12	207	29	29	20	20	1.98
41410083--41410221	47	3.0	46	75	16	144	29	28	19	22	1.98
41415091--41416406	659	2.0	659	100	0	2632	35	19	15	29	1.92
41417063--41417251	50	3.8	49	83	2	234	30	24	16	27	1.97
41417076--41417259	101	1.8	99	87	2	269	30	25	16	27	1.97
41426074--41426104	16	1.9	16	93	0	53	61	6	9	22	1.50
41433193--41433500	40	7.7	40	97	0	562	22	27	20	30	1.98
41440543--41440711	27	6.2	27	84	4	196	30	26	15	27	1.96
41440555--41440710	82	1.9	81	88	3	233	29	28	15	26	1.96
41444135--41444170	2	18.0	2	100	0	72	0	50	0	50	1.00
41445672--41445960	50	5.7	50	78	5	242	31	25	15	28	1.96
41445675--41445960	151	1.9	151	82	3	360	31	25	15	27	1.96
41455668--41455778	57	1.9	57	81	3	134	31	18	18	31	1.95
41456189--41456235	20	2.3	20	85	7	60	25	17	19	38	1.92
41458039--41458079	21	2.0	21	100	0	82	26	9	4	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41464359--41464502	48	3.0	48	81	0	180	26	22	22	28	1.99
41466648--41466716	33	2.1	33	86	7	97	17	7	2	72	1.20
41468663--41468693	12	2.6	12	94	0	53	16	19	6	58	1.59
41476041--41476106	31	2.1	31	97	0	123	33	15	24	27	1.95
41483456--41483503	25	1.9	25	86	0	69	35	22	14	27	1.93
41483547--41483585	20	2.0	20	100	0	78	35	12	20	30	1.90
41483637--41483709	23	3.1	23	94	3	128	28	20	20	30	1.98
41483636--41483730	24	4.0	24	89	6	140	28	21	22	28	1.99
41483924--41483987	31	2.1	31	93	0	110	37	15	23	23	1.93
41489685--41489862	27	6.6	27	84	3	205	29	28	15	26	1.96
41489706--41489861	82	1.9	81	88	3	233	29	28	15	26	1.96
41503910--41503985	21	3.5	21	66	16	55	36	27	13	22	1.91
41521473--41521528	14	3.9	14	82	13	78	48	12	7	32	1.68
41521564--41521623	27	2.2	27	93	0	102	21	21	21	35	1.96
41532908--41533065	42	3.7	42	83	3	183	30	13	24	31	1.94
41536050--41536322	46	5.9	46	86	3	352	21	23	13	41	1.89
41538432--41538466	8	4.6	8	86	13	56	74	0	0	25	0.82
41538433--41538466	14	2.5	14	95	4	61	73	0	0	26	0.83
41541333--41541752	46	8.9	47	85	5	510	22	23	13	41	1.88
41541333--41541756	97	4.5	96	88	4	567	22	23	12	41	1.88
41541574--41541647	24	3.2	24	65	27	68	22	24	13	39	1.90
41543419--41543465	21	2.1	21	84	11	58	14	29	0	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41547680--41547862	79	2.3	81	85	7	241	25	27	22	24	2.00
41547659--41547862	40	5.1	40	83	8	247	25	27	22	24	1.99
41551921--41551948	10	2.8	10	100	0	56	10	10	7	71	1.31
41566144--41566180	14	2.6	14	95	0	65	35	2	16	45	1.61
41568226--41569060	420	2.0	420	95	0	1517	29	12	23	35	1.91
41597558--41597594	15	2.5	15	86	4	58	75	2	5	16	1.10
41602406--41602455	24	2.1	23	82	10	57	42	0	12	46	1.41
41602496--41602522	13	2.1	13	100	0	54	37	7	7	48	1.59
41614278--41614302	7	3.6	7	100	0	50	76	0	0	24	0.80
41616833--41616866	3	11.7	3	93	6	61	32	32	0	35	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310