genome.fa.s13.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  154  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50636736--50636796	21	2.9	21	82	4	79	31	19	11	37	1.87
50636744--50636796	11	5.0	11	75	6	56	28	20	13	37	1.90
50639635--50639812	27	6.6	27	82	3	196	27	15	27	29	1.96
50639636--50639791	82	1.9	81	86	3	224	27	15	27	29	1.96
50639632--50639812	82	2.2	81	82	2	220	27	15	27	29	1.96
50648055--50648115	21	2.9	21	82	4	79	32	18	11	37	1.86
50648041--50648115	10	7.1	11	73	7	57	33	16	13	37	1.87
50651207--50651427	40	5.6	40	87	0	291	26	25	22	26	2.00
50660984--50661051	29	2.3	29	85	5	93	27	30	13	27	1.94
50661158--50661225	29	2.3	29	82	5	84	27	29	13	29	1.94
50661332--50661399	29	2.3	29	82	5	84	27	29	13	29	1.94
50661501--50661579	29	2.7	30	82	13	110	29	30	15	25	1.96
50660877--50661548	174	3.9	174	99	0	1290	30	24	14	29	1.95
50663486--50663563	29	2.7	28	84	11	104	25	15	30	28	1.96
50663516--50663843	174	1.9	174	96	0	611	30	14	24	31	1.94
50665282--50665384	52	2.0	52	92	0	170	25	19	24	31	1.98
50665655--50665798	77	1.9	77	98	0	279	25	31	20	21	1.98
50671840--50671917	29	2.7	28	80	11	95	25	15	29	29	1.96
50671870--50672197	174	1.9	174	94	0	575	29	14	24	31	1.95
50674904--50675071	89	1.9	88	87	1	246	31	13	13	41	1.83
50677989--50678036	24	2.0	24	83	0	60	47	2	2	47	1.25
50684136--50684192	30	1.9	30	92	0	96	33	21	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50687041--50687080	19	2.2	19	90	4	64	40	15	7	37	1.75
50688130--50688154	8	3.1	8	100	0	50	76	0	0	24	0.80
50690521--50690711	51	3.8	51	80	8	246	29	27	17	25	1.98
50690519--50690703	101	1.8	102	91	3	311	29	26	18	25	1.98
50692863--50692895	11	3.1	11	82	8	50	9	30	0	60	1.27
50693301--50693325	8	3.1	8	100	0	50	76	0	0	24	0.80
50698347--50698384	18	2.1	18	90	0	58	39	34	5	21	1.76
50702733--50702757	13	1.9	13	100	0	50	72	8	8	12	1.29
50709425--50709449	8	3.1	8	100	0	50	52	12	0	36	1.39
50710836--50710867	6	5.3	6	100	0	64	65	0	15	18	1.27
50714728--50715014	50	5.8	50	83	4	348	20	32	19	27	1.97
50714728--50715018	97	3.0	100	80	7	335	20	32	19	27	1.97
50714682--50715014	147	2.3	148	89	1	508	21	31	20	27	1.98
50717637--50717678	18	2.4	18	92	4	68	21	19	19	40	1.92
50719429--50719476	21	2.2	22	77	3	53	52	8	4	35	1.51
50725710--50725752	3	14.3	3	100	0	86	67	0	0	32	0.91
50744097--50744146	20	2.5	21	90	9	86	42	24	22	12	1.87
50744109--50744208	22	4.6	21	72	11	69	44	26	17	13	1.84
50753682--50753725	15	2.8	16	86	6	54	50	27	2	20	1.60
50754277--50754658	190	2.0	190	92	0	629	36	24	9	28	1.88
50755049--50755099	22	2.3	22	83	12	61	45	9	15	29	1.79
50763102--50763401	150	2.0	150	99	0	591	27	18	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50778291--50778389	23	4.3	23	78	10	112	23	21	24	31	1.98
50782941--50783198	40	6.3	41	80	7	276	27	17	25	30	1.97
50782942--50783179	81	2.9	80	77	9	232	28	17	24	29	1.97
50782933--50783198	122	2.2	122	99	0	525	26	17	24	31	1.97
50791312--50791426	31	3.7	31	91	1	187	28	25	16	29	1.97
50791448--50791541	42	2.2	42	94	0	161	32	21	15	29	1.95
50791662--50791759	25	4.0	23	80	9	88	26	22	23	27	1.99
50792414--50792478	27	2.4	27	79	5	69	20	26	18	35	1.95
50792509--50792745	27	8.7	27	80	3	188	30	9	20	39	1.85
50792596--50792745	81	1.9	81	87	5	223	28	8	22	41	1.83
50792595--50792775	54	3.4	54	82	3	177	27	10	21	40	1.86
50792595--50792773	81	2.2	81	82	7	213	27	10	21	40	1.85
50792616--50792785	27	6.3	26	76	11	112	28	11	22	37	1.88
50792777--50792893	27	4.3	27	82	0	144	41	10	23	25	1.86
50798916--50799093	27	6.6	27	83	3	205	26	15	28	29	1.96
50798917--50799072	82	1.9	81	88	3	233	26	15	28	29	1.96
50798913--50799093	82	2.2	81	83	2	229	27	15	27	29	1.96
50806979--50807156	27	6.6	27	83	3	205	26	15	28	29	1.96
50806980--50807135	82	1.9	81	88	3	233	26	15	28	29	1.96
50806976--50807156	82	2.2	81	83	2	229	27	15	27	29	1.96
50812015--50812199	79	2.3	82	84	7	238	25	27	22	24	2.00
50811996--50812199	40	5.1	40	82	8	238	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50816078--50816450	187	2.0	187	95	0	674	32	25	18	23	1.97
50825706--50825886	40	4.6	40	83	2	222	26	21	25	26	2.00
50831216--50831510	47	6.2	47	85	4	385	29	30	8	31	1.87
50831271--50831507	49	4.9	48	88	4	354	30	29	8	32	1.86
50831271--50831510	96	2.5	96	94	0	426	30	29	7	31	1.86
50835327--50835402	22	3.5	22	73	7	73	42	15	28	13	1.85
50836043--50836085	23	1.9	23	85	4	61	37	18	0	44	1.50
50836924--50836965	22	2.0	22	90	4	68	61	2	0	35	1.09
50837381--50837502	36	3.4	36	96	0	217	38	5	4	51	1.45
50839452--50839490	20	2.0	20	84	0	51	58	2	0	38	1.12
50839547--50839582	10	3.7	10	88	3	56	38	0	0	61	0.96
50839715--50840616	133	6.8	133	98	0	1745	33	6	15	44	1.71
50861440--50861627	49	3.8	49	85	2	259	26	19	25	28	1.98
50861435--50861627	100	1.9	100	93	0	332	26	19	25	28	1.99
50863909--50863947	21	1.9	20	84	5	51	12	41	28	17	1.87
50864510--50864552	21	2.0	21	86	0	59	13	41	13	30	1.84
50869310--50869426	55	2.1	55	85	3	155	24	29	30	15	1.96
50872862--50872973	27	4.2	26	85	7	143	37	23	24	15	1.93
50872862--50872973	54	2.1	54	88	3	163	37	23	24	15	1.93
50874407--50874463	24	2.4	24	100	0	114	29	36	0	33	1.58
50882683--50882860	27	6.6	27	84	3	196	29	28	15	26	1.96
50882704--50882859	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50887573--50887677	27	3.9	27	84	9	133	36	20	24	18	1.95
50887566--50887677	54	2.1	54	89	3	172	36	21	24	17	1.95
50897222--50897393	93	1.8	95	86	5	251	29	16	30	23	1.96
50897218--50897392	47	3.7	47	76	15	191	29	17	30	22	1.97
50899683--50899813	67	2.0	67	92	0	217	30	31	18	19	1.96
50902342--50902382	18	2.3	18	87	4	66	14	43	29	12	1.82
50903622--50903794	27	6.4	27	74	9	165	26	22	8	42	1.81
50903619--50903758	56	2.6	55	84	5	169	29	21	8	40	1.83
50909224--50909256	16	2.1	16	94	0	57	54	3	0	42	1.15
50909688--50909871	29	6.3	29	78	7	183	22	26	11	40	1.87
50909709--50909782	30	2.5	30	86	2	96	22	29	9	37	1.86
50909688--50909811	59	2.1	59	86	4	171	20	27	12	40	1.87
50909688--50909873	88	2.1	89	85	5	245	22	25	11	40	1.88
50909771--50909908	59	2.4	57	83	11	181	24	23	10	41	1.86
50909800--50909899	29	3.4	29	81	2	128	26	24	9	41	1.84
50909709--50909899	88	2.2	88	81	5	208	24	26	10	39	1.87
50917340--50917370	16	1.9	16	100	0	62	58	9	6	25	1.54
50919534--50919633	50	2.0	50	94	0	173	21	30	13	36	1.91
50927886--50928040	43	3.6	42	76	6	159	32	25	16	25	1.96
50930294--50930324	14	2.3	14	94	5	55	45	19	6	29	1.75
50932832--50932884	25	2.1	25	89	0	79	26	18	20	33	1.96
50936412--50936541	43	3.0	43	74	12	115	31	25	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50943029--50943190	74	2.2	75	81	5	193	51	12	13	22	1.74
50943144--50943237	48	2.0	48	82	0	116	54	13	10	21	1.69
50944111--50944474	184	2.0	183	81	1	433	27	19	23	29	1.98
50945531--50945597	30	2.2	30	86	0	89	25	31	23	19	1.98
50946431--50946542	43	2.6	42	79	5	136	27	24	16	32	1.96
50953425--50953545	62	2.0	62	94	0	215	35	16	6	41	1.75
50953613--50953682	35	2.0	35	100	0	140	31	17	14	37	1.89
50953791--50953973	39	4.7	39	82	1	188	29	28	18	23	1.97
50954520--50954702	39	4.7	39	82	1	188	29	28	18	23	1.97
50960285--50960343	31	2.0	29	84	12	77	30	27	15	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310