genome.fa.s13.2.7.7.80.10.50.1000.280.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  280  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92149359--92149425	24	2.7	25	79	2	73	19	32	19	28	1.96
92149248--92149436	99	1.9	101	82	6	242	19	28	19	33	1.95
92149773--92150704	467	2.0	467	97	0	1767	27	11	19	41	1.86
92152446--92152475	10	3.1	10	95	4	53	43	16	10	30	1.81
92153567--92153605	5	7.8	5	85	8	53	74	0	25	0	0.82
92153540--92153614	14	5.6	14	73	16	70	66	0	30	2	1.05
92154592--92154626	18	2.0	18	94	5	63	54	0	0	45	0.99
92154715--92154758	19	2.4	18	85	7	54	40	9	0	50	1.34
92156799--92156842	19	2.4	19	85	7	56	40	9	0	50	1.34
92160104--92160590	150	3.3	148	84	5	565	27	18	29	24	1.98
92160104--92160540	50	8.8	50	84	4	539	27	18	29	24	1.98
92161291--92161324	17	2.0	17	100	0	68	41	5	23	29	1.78
92163537--92163655	27	4.4	28	80	9	122	39	21	26	12	1.89
92163537--92163663	54	2.3	55	79	5	141	40	20	25	13	1.89
92165208--92165336	56	2.3	55	81	5	136	16	30	25	27	1.97
92165391--92165415	12	2.1	12	100	0	50	8	24	32	36	1.84
92165725--92165773	24	2.0	26	84	8	66	51	26	4	18	1.64
92166239--92166293	27	2.0	27	82	6	67	25	25	0	49	1.51
92167442--92167475	16	2.1	16	94	0	59	35	8	0	55	1.31
92169836--92169925	44	2.0	44	91	0	144	36	8	4	50	1.54
92170363--92170407	17	2.6	17	86	13	58	55	0	2	42	1.12
92172410--92172454	20	2.3	20	96	3	83	44	8	20	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92177806--92177834	2	14.5	2	100	0	58	0	0	48	51	1.00
92178785--92178923	70	2.0	70	97	0	260	50	10	14	25	1.74
92179110--92179207	48	2.0	48	100	0	196	50	10	20	19	1.76
92183182--92183320	69	2.0	69	98	0	269	26	12	32	28	1.93
92185637--92185694	30	1.9	31	96	3	109	34	6	27	31	1.83
92192329--92192425	43	2.3	43	87	3	124	43	15	15	25	1.86
92192430--92192555	21	5.9	21	70	17	71	43	12	14	29	1.82
92192368--92192512	65	2.2	65	80	6	161	41	11	18	28	1.86
92192474--92192545	22	3.3	22	77	11	76	44	11	12	31	1.77
92192431--92192564	43	3.1	42	80	6	144	43	12	14	29	1.83
92194659--92194721	2	31.5	2	100	0	126	49	50	0	0	1.00
92197380--92197431	6	8.5	6	89	2	77	69	0	15	15	1.20
92199129--92199184	28	2.0	28	92	0	94	26	19	23	30	1.98
92206551--92206813	40	6.6	40	87	3	300	26	28	20	24	1.99
92212530--92212589	30	2.0	30	100	0	120	16	13	20	50	1.78
92217184--92217227	20	2.2	20	95	0	79	29	6	6	56	1.51
92231623--92231914	40	7.3	40	92	3	412	26	21	27	24	1.99
92231571--92231947	80	4.7	80	83	7	238	26	21	27	23	1.99
92239414--92239509	27	3.5	27	80	7	104	40	21	8	29	1.82
92239440--92239746	27	11.7	26	77	10	92	37	23	8	30	1.84
92239515--92239620	54	2.0	53	98	1	203	28	26	7	37	1.83
92239516--92239628	53	2.1	54	95	1	201	30	25	6	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92239516--92239657	53	2.6	53	87	4	169	32	24	7	35	1.82
92239516--92239670	80	1.9	80	82	2	195	32	25	7	34	1.83
92239590--92239746	54	2.9	54	80	2	147	38	22	8	29	1.84
92239731--92239878	27	5.3	27	82	9	179	34	18	21	25	1.96
92239749--92239840	33	3.0	31	85	13	113	33	16	25	25	1.96
92239731--92239860	60	2.3	59	85	7	180	34	19	21	24	1.96
92240543--92240622	31	2.6	31	91	0	124	18	18	15	47	1.83
92240543--92240627	6	13.8	6	76	14	84	18	18	14	48	1.81
92240543--92240627	19	4.6	18	73	16	84	18	18	14	48	1.81
92246560--92246603	20	2.3	20	81	18	58	45	0	4	50	1.22
92246939--92246973	13	2.8	13	91	4	54	74	0	25	0	0.82
92246937--92246970	17	2.0	17	94	0	59	73	0	26	0	0.83
92248945--92248993	22	2.3	22	86	6	66	24	30	30	14	1.94
92250561--92250754	97	2.0	97	96	0	361	31	22	22	23	1.98
92258189--92258300	27	4.1	27	80	12	122	16	24	21	37	1.94
92258189--92258309	54	2.2	54	82	2	145	17	25	21	35	1.95
92262261--92262515	55	4.8	54	80	9	278	36	17	25	21	1.95
92262268--92262468	108	1.8	110	90	4	327	34	17	25	22	1.96
92262707--92262737	16	1.9	16	93	0	53	41	0	22	35	1.54
92267178--92267285	27	4.0	27	91	0	162	32	19	21	26	1.97
92267190--92267311	54	2.3	54	81	9	144	35	19	18	27	1.95
92267270--92267337	26	2.6	27	85	4	93	41	19	10	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92267321--92267821	27	18.5	26	78	11	350	40	17	9	32	1.82
92267305--92267809	54	9.3	53	79	6	480	39	17	10	32	1.83
92267270--92267809	163	3.3	163	87	3	707	39	17	10	32	1.83
92268065--92268188	41	3.0	41	85	2	142	23	20	27	28	1.99
92268330--92268391	22	2.8	22	78	9	72	17	22	24	35	1.95
92276364--92276532	46	3.7	47	79	10	172	28	20	28	23	1.99
92276364--92276630	46	5.7	49	75	13	169	28	19	28	22	1.98
92281180--92281213	13	2.6	13	95	0	59	41	14	17	26	1.88
92281312--92281343	3	10.7	3	93	0	55	31	3	0	65	1.08
92292017--92292057	15	2.6	16	85	11	50	9	31	0	58	1.31
92295600--92295657	29	2.0	29	100	0	116	41	17	20	20	1.90
92299015--92299101	44	2.0	44	86	4	122	35	13	26	24	1.93
92299237--92299359	47	2.6	47	93	0	201	34	15	23	26	1.95
92299104--92299373	95	2.9	92	75	9	231	33	18	24	23	1.97
92300039--92300084	23	2.0	23	84	12	60	45	10	6	36	1.65
92300046--92300090	23	2.0	23	82	8	56	40	13	8	37	1.76
92301822--92301863	17	2.6	16	88	7	59	26	14	19	40	1.89
92314112--92314291	92	2.0	92	97	0	342	31	25	17	26	1.97
92317807--92317842	10	3.6	10	84	0	54	36	19	25	19	1.95
92317807--92317845	20	2.0	20	94	0	69	38	17	25	17	1.92
92317809--92317852	20	2.2	20	87	0	61	38	18	22	20	1.93
92327807--92327849	15	2.9	15	92	0	77	30	25	6	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92340928--92340967	22	1.9	22	85	10	57	27	12	20	40	1.88
92343118--92343151	17	2.0	17	94	0	59	55	5	8	29	1.54
92358499--92358526	5	5.6	5	100	0	56	82	0	17	0	0.68
92361175--92361203	2	14.5	2	100	0	58	0	48	0	51	1.00
92365207--92365327	46	2.6	46	85	7	158	33	26	19	21	1.97
92367200--92367279	30	2.7	30	82	7	99	56	15	17	11	1.67
92367200--92367270	15	4.7	15	81	6	90	57	12	18	11	1.64
92367202--92367279	15	5.2	15	78	9	79	56	15	16	11	1.67
92370200--92370371	93	1.8	93	94	0	308	27	30	21	20	1.98
92370192--92370367	46	3.8	46	80	12	216	28	29	21	20	1.98
92371667--92371759	29	3.2	29	92	3	161	32	29	12	25	1.93
92387651--92387702	26	2.0	26	100	0	104	19	19	30	30	1.96
92394297--92394339	21	2.0	21	95	0	77	34	18	23	23	1.96
92396135--92396310	46	3.8	46	79	12	216	20	21	29	28	1.98
92396132--92396303	93	1.8	93	96	0	317	20	21	29	27	1.98
92403716--92403891	46	3.8	46	80	12	225	21	21	28	28	1.98
92403713--92403883	93	1.8	93	96	0	315	21	21	29	28	1.98
92411617--92411749	40	3.3	39	84	5	167	25	24	26	24	2.00
92438292--92438463	46	3.7	46	71	14	129	31	28	18	21	1.96
92438301--92438562	93	2.8	93	83	2	339	30	26	19	23	1.98
92440658--92440722	6	10.3	6	79	11	51	73	4	4	16	1.17
92440834--92440878	22	2.0	22	83	8	56	11	2	68	17	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92441005--92441034	12	2.4	13	94	5	53	53	0	43	3	1.17
92443466--92443599	40	3.3	40	88	4	155	22	28	23	25	1.99
92443430--92443599	80	2.2	78	80	6	182	22	28	23	25	2.00
92451464--92451575	40	2.8	40	89	2	154	28	27	20	23	1.99
92451465--92451591	40	3.2	40	81	10	125	29	25	21	23	1.99
92461076--92461253	40	4.5	40	94	2	297	24	23	28	24	2.00
92473796--92474058	40	6.6	40	87	3	309	26	28	20	23	1.99
92475309--92475371	23	2.7	24	75	20	69	41	7	22	28	1.82
92476845--92476958	37	3.1	37	87	1	158	30	30	15	22	1.95
92477104--92477288	48	3.8	48	90	2	307	31	27	5	35	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310