genome.fa.s13.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  132  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42671792--42671842	26	2.0	26	84	3	68	64	3	0	31	1.11
42671804--42671852	26	2.0	24	88	8	71	63	6	0	30	1.19
42682373--42682553	40	4.6	40	88	2	249	26	23	24	25	2.00
42692179--42692323	40	3.6	40	84	6	177	25	24	25	24	2.00
42700203--42700354	40	3.8	40	83	6	184	24	24	26	25	2.00
42701733--42701879	40	3.7	40	85	0	188	27	23	23	25	2.00
42704080--42704235	46	3.4	46	76	15	176	21	20	28	28	1.98
42711578--42711706	46	2.8	46	95	0	222	19	21	29	29	1.98
42714077--42714134	29	2.0	29	100	0	116	24	10	20	44	1.82
42723334--42723478	45	3.2	45	97	0	263	23	24	26	26	2.00
42724139--42724310	45	3.8	45	92	1	283	24	24	26	25	2.00
42722677--42724283	805	2.0	804	99	0	3160	34	11	21	32	1.88
42734140--42734311	79	2.2	79	82	3	211	24	21	28	25	1.99
42734087--42734309	40	5.6	39	80	8	200	25	21	27	25	1.99
42734167--42734344	79	2.2	80	81	2	198	24	21	28	24	1.99
42742066--42742355	40	7.3	40	93	1	422	24	21	27	26	1.99
42742013--42742355	80	4.3	80	88	2	424	25	20	27	26	1.99
42742013--42742357	120	2.9	118	86	3	424	24	20	27	26	1.99
42751692--42751733	18	2.3	18	84	8	50	45	14	19	21	1.85
42752060--42752229	27	6.4	27	81	2	166	44	16	14	25	1.85
42752067--42752225	54	3.0	54	78	2	187	44	16	12	26	1.83
42759619--42759879	27	9.6	27	92	2	414	27	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42759619--42759879	55	4.8	54	94	1	432	27	13	28	30	1.94
42759619--42759879	82	3.2	82	94	1	443	27	13	28	30	1.94
42775092--42775172	41	2.0	41	97	0	153	20	27	23	28	1.99
42776660--42776717	30	1.9	30	82	3	71	31	24	10	34	1.89
42786106--42786135	9	3.2	9	95	4	51	20	3	23	53	1.60
42791421--42791557	40	3.4	40	86	0	175	24	17	24	32	1.97
42792987--42793077	26	3.5	26	76	11	87	37	24	19	18	1.94
42816270--42816452	40	4.6	39	81	6	170	24	20	27	26	1.99
42816306--42816487	79	2.3	80	79	3	190	26	20	27	25	1.99
42820384--42820467	42	2.0	42	97	0	159	29	11	28	29	1.92
42827882--42827939	15	3.9	15	81	0	71	58	15	13	12	1.63
42831573--42831680	26	4.2	26	92	0	180	32	6	24	37	1.81
42835675--42835770	47	2.0	47	93	0	165	35	15	25	23	1.94
42835683--42835756	24	3.1	24	63	24	57	37	17	24	20	1.93
42837217--42837324	26	4.2	25	89	7	162	32	7	23	37	1.82
42837217--42837324	52	2.1	52	92	0	180	32	7	23	37	1.82
42840670--42840716	22	2.1	22	100	0	94	42	31	0	25	1.55
42841725--42841785	30	2.0	30	83	0	77	31	22	8	37	1.84
42844264--42844302	14	2.6	16	88	8	55	35	20	2	41	1.66
42845032--42845056	12	2.1	12	100	0	50	68	0	24	8	1.16
42846627--42846666	21	1.9	21	94	0	71	37	10	12	40	1.77
42846745--42846783	19	2.1	19	95	0	69	28	10	12	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42846719--42846847	54	2.4	54	81	2	161	31	10	13	44	1.78
42846900--42846944	19	2.4	19	85	7	56	24	2	20	53	1.57
42846909--42846945	9	3.9	10	82	10	51	24	0	18	56	1.41
42847004--42847091	45	2.0	45	82	8	108	36	13	13	36	1.85
42847564--42847656	48	1.9	48	91	0	150	20	18	16	45	1.86
42849252--42849351	39	2.6	38	80	10	114	51	10	2	37	1.47
42852105--42853000	40	22.4	40	98	0	1715	22	22	27	27	1.99
42859626--42859784	35	4.5	35	80	0	174	28	7	20	43	1.79
42860705--42860734	15	2.0	15	100	0	60	33	13	0	53	1.40
42869585--42869769	40	4.6	39	78	5	167	24	22	27	24	2.00
42876527--42876551	12	2.1	12	100	0	50	32	32	0	36	1.58
42888495--42888522	14	2.0	14	100	0	56	35	7	28	28	1.84
42891421--42891533	29	4.0	28	79	8	120	28	28	15	28	1.96
42891410--42891520	58	1.9	57	83	1	141	27	28	15	27	1.96
42891744--42891789	16	2.9	16	80	0	56	6	21	23	47	1.74
42898183--42898350	46	3.6	46	80	8	164	25	30	18	25	1.98
42904035--42904060	13	2.0	13	100	0	52	61	7	0	30	1.24
42905601--42905702	29	3.6	29	72	7	91	28	32	16	22	1.96
42905574--42905734	57	2.8	57	86	0	214	29	31	18	21	1.97
42905574--42905730	28	5.6	27	71	8	107	29	30	18	21	1.97
42905762--42906215	40	11.4	40	88	4	693	25	27	22	24	2.00
42905762--42906215	80	5.7	80	98	0	872	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42907658--42907748	46	2.0	46	86	0	128	27	30	6	35	1.82
42907742--42907913	47	3.7	47	88	1	229	26	26	10	36	1.89
42907810--42907887	22	3.4	22	71	22	70	24	26	12	35	1.92
42907785--42907912	25	5.4	24	69	23	92	27	25	10	36	1.89
42911563--42911768	40	5.2	40	88	4	301	23	22	27	26	2.00
42911563--42911768	80	2.6	80	96	2	371	23	22	27	26	2.00
42914327--42914356	15	2.0	15	93	0	51	50	33	13	3	1.58
42920442--42920624	79	2.3	81	82	7	214	24	22	27	25	2.00
42920442--42920626	40	4.6	41	82	7	213	24	22	28	25	1.99
42920481--42920651	79	2.2	79	78	8	179	27	20	26	25	1.99
42926139--42926306	46	3.6	46	79	9	173	27	19	30	22	1.98
42931709--42931734	9	2.9	9	100	0	52	11	0	23	65	1.25
42932629--42932755	47	2.7	45	76	8	128	29	16	27	25	1.97
42933730--42933773	22	2.0	22	95	0	79	20	4	52	22	1.65
42934971--42935089	29	4.2	29	80	4	118	30	13	31	25	1.94
42936160--42936194	18	2.0	18	88	5	54	37	20	14	28	1.91
42939281--42939320	20	2.0	21	85	5	55	32	7	0	60	1.25
42952343--42952455	27	4.2	28	84	5	144	33	19	24	22	1.97
42952343--42952456	55	2.1	54	87	6	169	34	19	24	21	1.96
42958344--42958373	16	1.9	15	93	6	51	33	23	0	43	1.54
42960413--42960603	39	4.9	39	85	3	174	19	23	29	27	1.98
42963313--42963345	4	8.2	4	100	0	66	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42966014--42966218	40	5.2	40	85	2	263	26	26	22	24	2.00
42975883--42975973	47	1.9	47	90	0	146	30	23	18	27	1.98
42979270--42979429	57	2.8	56	79	1	176	30	19	6	43	1.77
42980303--42980378	38	2.0	37	84	2	98	34	10	15	39	1.82
42982714--42982806	19	5.1	19	72	12	77	29	9	13	47	1.75
42982688--42982816	54	2.4	54	92	0	213	32	9	14	43	1.78
42984172--42984245	18	4.3	17	77	14	71	35	22	1	40	1.63
42984172--42984245	17	4.3	17	81	8	78	35	22	1	40	1.63
42985425--42985472	13	3.3	14	75	18	53	58	2	2	37	1.22
42985875--42985934	3	20.3	3	77	3	59	63	3	0	33	1.11
42986400--42986492	48	1.9	48	91	0	150	20	17	17	45	1.86
42987987--42988034	26	2.0	24	81	18	57	66	4	25	4	1.27
42988232--42988271	21	1.9	21	89	0	62	47	5	15	32	1.66
42993258--42993365	26	4.2	26	89	0	171	32	5	24	37	1.78
42996989--42997200	108	2.0	107	96	0	388	32	27	13	25	1.94
42999103--42999135	4	8.0	4	96	3	57	72	3	0	24	0.98
43000495--43000547	23	2.4	22	76	20	56	9	18	1	69	1.25
43005035--43005200	45	3.7	44	69	7	111	33	27	15	23	1.94
43005313--43005360	24	2.0	24	100	0	96	25	29	16	29	1.97
43005410--43005448	14	2.6	16	88	8	55	35	20	2	41	1.66
43006178--43006202	12	2.1	12	100	0	50	68	0	24	8	1.16
43007787--43007826	21	1.9	21	94	0	71	37	10	12	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43007879--43008007	54	2.4	54	82	2	170	31	11	13	44	1.79
43008060--43008104	19	2.4	19	85	7	56	24	2	20	53	1.57
43008069--43008105	9	3.9	10	82	10	51	24	0	18	56	1.41
43008721--43008813	48	1.9	48	91	0	150	22	19	16	41	1.89
43009290--43009347	28	2.1	28	96	0	107	46	3	18	31	1.66
43016773--43016931	35	4.5	35	80	0	174	28	7	20	43	1.79
43030436--43030462	12	2.2	12	100	0	54	0	48	29	22	1.51
43034809--43034867	30	2.0	30	83	6	75	33	16	6	42	1.75
43040948--43041010	31	2.0	31	96	0	117	23	6	25	44	1.77
43041047--43041074	14	2.0	14	100	0	56	35	7	28	28	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310