genome.fa.s13.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  99  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31809833--31809880	12	3.9	12	75	5	51	39	4	18	37	1.70
31810087--31810207	61	2.0	60	95	0	206	37	7	23	31	1.82
31818412--31818806	131	3.0	131	98	1	760	25	12	14	46	1.80
31823234--31823258	13	1.9	13	100	0	50	32	0	20	48	1.50
31824347--31824550	44	4.7	42	85	7	200	24	19	25	30	1.98
31828358--31828542	40	4.7	40	81	5	178	27	28	20	24	1.99
31828325--31828542	40	5.5	39	77	7	165	25	27	20	25	1.99
31836228--31836450	40	5.6	40	85	3	236	26	27	21	24	1.99
31836382--31836459	40	1.9	41	82	10	97	26	28	21	23	1.99
31841882--31841908	13	2.1	13	100	0	54	29	0	22	48	1.51
31843002--31843121	44	2.7	44	89	2	179	22	19	28	30	1.98
31848558--31848588	16	1.9	16	93	0	53	48	0	9	41	1.36
31848576--31848611	5	7.8	5	87	12	51	61	0	0	38	0.96
31848802--31848879	25	3.4	25	64	20	69	39	12	7	39	1.72
31848782--31848879	44	2.2	44	98	0	187	39	12	8	39	1.72
31857698--31857821	47	2.7	46	82	9	155	28	19	28	24	1.98
31873143--31873175	17	1.9	18	88	11	52	48	0	9	42	1.35
31873154--31873207	26	2.2	24	83	12	65	44	0	5	50	1.25
31874536--31874561	11	2.4	11	100	0	52	46	23	0	30	1.53
31884116--31884201	43	2.0	43	81	4	102	26	29	20	23	1.99
31886757--31886927	46	3.7	46	96	0	306	20	20	29	29	1.98
31894674--31894849	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31894671--31894842	93	1.8	93	96	0	317	20	21	29	27	1.98
31906354--31906441	45	2.0	45	97	0	167	22	19	20	37	1.94
31944200--31944418	79	2.8	79	83	4	253	15	18	25	41	1.89
31944199--31944418	40	5.6	40	84	5	268	15	18	25	41	1.89
31944212--31944433	119	1.9	117	82	6	277	14	17	26	41	1.88
31944909--31944933	12	2.1	12	100	0	50	24	8	28	40	1.83
31959955--31960015	24	2.6	24	89	2	88	47	13	21	18	1.82
31960276--31960347	28	2.5	28	78	10	74	30	15	29	25	1.96
31960273--31960348	29	2.7	29	74	10	84	30	14	28	26	1.95
31972785--31972852	19	3.4	19	69	11	64	47	1	8	42	1.43
31972777--31972858	41	2.0	41	100	0	164	46	2	12	39	1.54
31973735--31973780	21	2.3	20	78	14	51	30	6	17	45	1.73
31979347--31979399	25	2.1	25	96	0	97	39	15	26	18	1.90
31985908--31986010	48	2.2	48	94	1	181	27	14	35	22	1.93
31989186--31989229	22	1.9	24	86	9	65	52	4	4	38	1.42
31992291--31992406	40	2.9	40	92	0	187	32	34	14	18	1.91
31992724--31992844	48	2.5	48	86	5	154	20	29	28	21	1.98
31992749--31992844	48	2.0	48	93	0	165	21	27	28	22	1.99
31998462--31998510	25	2.0	25	100	0	98	28	4	28	38	1.75
32000064--32000270	54	3.9	54	79	8	233	21	25	17	35	1.95
32000249--32000370	47	2.6	47	97	0	226	25	24	13	36	1.93
32001691--32001732	19	2.2	19	100	0	84	11	28	9	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32009844--32009956	60	1.9	60	96	0	208	29	20	27	23	1.99
32011091--32011396	150	2.0	151	98	0	596	38	9	25	26	1.87
32011958--32012135	27	6.6	27	83	3	205	26	15	28	29	1.96
32011959--32012114	82	1.9	81	88	3	233	26	15	28	29	1.96
32011955--32012135	82	2.2	81	83	2	229	27	15	27	29	1.96
32013170--32013251	38	2.2	38	95	4	148	29	12	35	23	1.91
32022305--32022358	19	2.8	19	78	10	56	33	7	22	37	1.82
32024994--32025063	26	2.7	26	84	0	86	25	22	21	30	1.99
32032605--32032728	23	5.3	23	75	10	110	23	24	19	33	1.97
32034713--32034762	22	2.3	21	79	3	55	12	30	38	20	1.88
32044103--32044361	47	5.3	49	81	6	249	27	13	27	32	1.93
32044316--32044416	42	2.4	41	83	3	130	28	12	28	29	1.93
32044491--32044524	15	2.3	15	100	0	68	35	5	23	35	1.79
32045127--32045178	26	2.1	26	83	16	67	48	0	21	30	1.51
32049069--32049107	14	2.7	15	84	11	55	25	15	28	30	1.96
32065351--32065474	43	2.9	42	76	8	133	29	25	16	28	1.96
32068693--32068722	14	2.1	14	93	0	51	46	36	0	16	1.47
32074245--32074377	62	2.2	57	84	6	167	41	3	3	51	1.35
32074321--32074382	12	5.1	12	72	27	51	48	1	1	48	1.21
32077302--32077326	12	2.1	12	100	0	50	24	24	0	52	1.48
32077610--32077690	23	3.6	23	77	3	92	17	1	39	41	1.57
32079698--32079735	20	1.9	20	88	0	58	34	21	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32081013--32081092	42	1.9	42	94	0	142	36	22	16	25	1.94
32082889--32082929	19	2.2	19	100	0	82	34	17	0	48	1.47
32094306--32094330	13	1.9	13	100	0	50	16	40	32	12	1.84
32106043--32106067	13	1.9	13	100	0	50	32	0	4	64	1.12
32109137--32109202	10	6.4	9	74	20	51	71	3	3	22	1.14
32113850--32113887	20	1.9	20	88	0	58	52	23	13	10	1.71
32114161--32114200	21	2.0	20	90	5	62	70	10	2	17	1.27
32120660--32120784	46	2.7	46	88	0	187	20	21	27	30	1.98
32123156--32123284	46	2.8	46	83	2	141	27	16	24	32	1.96
32124988--32125038	24	2.4	21	77	22	61	29	5	5	58	1.45
32124996--32125042	14	3.6	14	72	21	57	31	6	4	57	1.43
32124995--32125045	24	2.1	24	96	0	93	33	5	3	56	1.42
32126047--32126754	356	2.0	354	88	0	1038	20	24	26	28	1.99
32130060--32130264	47	4.4	45	78	10	209	24	20	31	23	1.98
32130060--32130264	94	2.2	91	83	7	245	24	20	31	23	1.98
32136114--32136174	22	2.9	22	82	4	63	44	18	8	29	1.78
32136864--32137002	49	2.8	47	73	8	125	23	26	18	31	1.97
32141977--32142968	42	23.9	42	97	1	1794	26	21	28	23	1.99
32145043--32145156	40	2.8	40	88	5	167	27	21	27	23	1.99
32153075--32153221	40	3.7	40	92	0	240	27	22	28	21	1.99
32153075--32153225	80	1.9	80	94	0	266	27	21	28	22	1.99
32153075--32153244	80	2.1	80	90	0	259	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32166178--32166225	24	2.0	24	95	0	87	52	8	14	25	1.69
32173377--32173417	12	3.4	12	82	0	55	75	4	4	14	1.14
32174451--32174501	26	2.0	26	88	0	75	49	41	1	7	1.43
32175608--32175717	50	2.3	48	85	6	143	38	2	3	55	1.32
32175639--32175787	3	50.0	3	70	7	90	28	4	4	62	1.34
32175890--32176038	74	2.0	74	98	0	289	34	6	1	57	1.32
32177702--32177964	40	6.6	39	85	4	269	26	26	20	25	1.99
32177896--32177973	40	1.9	41	82	10	97	26	28	20	24	1.99
32179892--32179929	18	2.1	18	100	0	76	34	13	10	42	1.78
32184273--32184375	7	14.1	7	73	18	86	80	0	16	1	0.86
32184294--32184371	5	16.8	5	77	15	71	82	0	16	1	0.75
32184264--32184372	26	4.2	26	80	12	118	79	0	16	2	0.89
32184294--32184377	19	4.8	19	75	21	85	80	0	17	1	0.77
32184273--32184372	13	7.8	13	75	15	93	81	1	16	2	0.85
32185514--32186219	142	5.0	143	83	2	828	30	20	22	26	1.98
32186630--32186680	26	2.0	26	88	0	75	49	41	1	7	1.43
32187813--32187915	18	5.7	18	78	8	102	25	5	3	65	1.33
32187812--32187915	3	34.7	3	74	5	77	25	5	3	64	1.33
32195090--32195123	10	3.3	10	88	8	50	58	17	20	2	1.51
32196150--32196193	21	2.0	22	91	4	72	40	4	6	47	1.50
32200819--32201073	55	4.8	54	76	9	204	21	24	16	37	1.94
32200866--32201010	53	2.7	53	81	8	177	22	23	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32208444--32208602	53	2.9	55	78	5	180	23	23	16	36	1.94
32209860--32209902	22	1.9	23	90	4	70	34	16	39	9	1.80
32210464--32210553	5	16.8	5	75	19	67	17	4	1	76	1.01
32210469--32210555	45	2.0	43	82	13	106	18	4	2	74	1.09
32233542--32233664	49	2.5	49	86	2	158	22	28	21	27	1.99
32236275--32236316	20	2.1	20	100	0	84	50	4	4	40	1.45
32238209--32238381	46	3.7	46	79	4	159	25	29	17	27	1.98
32243910--32244034	49	2.5	49	85	6	155	23	33	18	24	1.97
32247621--32247669	16	3.1	16	90	0	80	34	4	36	24	1.75
32247883--32247923	15	2.6	16	81	14	50	53	2	0	43	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310