genome.fa.s13.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  135  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43786793--43787040	41	6.1	40	79	3	210	37	16	25	20	1.93
43786808--43787040	82	2.9	80	82	3	268	38	16	25	20	1.92
43788844--43788881	19	2.0	19	94	0	67	23	2	36	36	1.69
43791183--43791322	44	3.3	42	82	7	131	25	19	25	30	1.98
43791169--43791322	43	3.6	42	77	10	141	24	18	24	32	1.97
43791183--43791340	43	3.7	43	75	10	126	24	18	25	30	1.98
43793847--43793879	15	2.2	15	94	0	57	57	12	12	18	1.64
43796864--43797041	51	3.6	49	81	5	216	28	25	19	26	1.99
43796857--43797041	100	1.9	100	93	1	318	28	25	20	25	1.99
43804158--43804405	41	6.1	40	79	3	210	37	16	25	20	1.93
43804173--43804405	82	2.9	80	82	3	268	38	16	25	20	1.92
43806209--43806246	19	2.0	19	94	0	67	23	2	36	36	1.69
43808548--43808687	44	3.3	42	82	7	131	25	19	25	30	1.98
43808534--43808687	43	3.6	42	77	10	141	24	18	24	32	1.97
43808548--43808705	43	3.7	43	75	10	126	24	18	25	30	1.98
43811505--43811570	24	2.8	24	77	9	80	28	21	24	25	1.99
43813736--43813880	40	3.6	40	80	9	154	24	22	27	25	2.00
43813735--43813886	80	1.9	80	82	5	191	25	22	27	25	2.00
43823021--43823151	44	3.0	43	83	8	160	25	16	25	32	1.96
43825150--43825214	24	2.7	24	82	0	76	27	18	24	29	1.98
43835436--43835524	27	3.3	27	81	6	90	28	14	17	39	1.89
43835476--43835841	27	13.7	27	78	6	343	29	10	20	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43835502--43835841	107	3.2	107	82	2	389	29	10	20	39	1.86
43835476--43835841	80	4.6	81	79	6	370	29	10	20	39	1.86
43836181--43836249	28	2.5	28	90	0	111	33	39	8	18	1.82
43838635--43838702	34	2.0	33	94	2	118	23	41	8	25	1.83
43839087--43839179	27	3.4	27	84	0	87	33	16	11	38	1.85
43839132--43839603	27	17.6	27	76	10	303	32	9	19	39	1.83
43839129--43839584	80	5.7	81	77	4	275	32	9	19	39	1.83
43839131--43839603	54	8.8	54	78	5	415	32	9	19	39	1.83
43839160--43839604	160	2.8	161	80	7	485	32	8	19	39	1.83
43839919--43840010	28	3.3	28	89	0	130	26	35	17	20	1.95
43846420--43846701	136	2.1	137	90	6	448	44	5	9	41	1.59
43846677--43846827	76	2.0	75	89	1	230	30	16	7	45	1.74
43849843--43849890	24	2.0	24	84	8	62	29	0	25	45	1.53
43851051--43851081	13	2.4	13	100	0	62	16	38	22	22	1.92
43858917--43858998	39	2.1	39	88	4	121	21	20	26	30	1.98
43867635--43867785	27	5.6	27	81	4	169	27	15	27	29	1.96
43867635--43867785	55	2.8	55	86	5	191	27	15	27	29	1.96
43870351--43870437	39	2.2	39	97	0	165	21	24	27	26	1.99
43870351--43870450	39	2.6	39	90	3	130	22	24	27	27	1.99
43871680--43871722	10	4.1	10	80	11	50	53	27	2	16	1.55
43872498--43872592	44	2.2	44	85	7	124	32	21	16	29	1.95
43887259--43887299	20	2.0	20	95	0	73	26	4	7	60	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43901279--43901339	27	2.2	28	88	5	90	37	22	9	29	1.87
43907626--43907849	39	5.7	40	83	9	248	24	27	22	25	2.00
43907626--43907849	79	2.8	78	81	9	256	24	27	22	25	2.00
43910262--43910313	25	2.1	25	100	0	104	42	0	28	28	1.56
43915089--43915130	17	2.5	17	96	0	75	28	19	16	35	1.93
43925999--43926054	21	2.7	21	88	2	78	26	30	35	7	1.83
43926015--43926059	21	2.1	21	91	0	72	22	26	42	8	1.83
43926465--43926513	23	2.1	24	88	3	73	28	30	20	20	1.98
43927399--43927567	46	3.7	45	78	7	162	24	30	17	27	1.97
43928734--43928912	85	2.1	85	98	0	349	38	8	26	26	1.85
43936956--43937133	27	6.6	27	83	3	205	26	15	28	29	1.96
43936957--43937112	82	1.9	81	88	3	233	26	15	28	29	1.96
43936953--43937133	82	2.2	81	83	2	229	27	15	27	29	1.96
43945019--43945196	27	6.6	27	83	3	205	26	15	28	29	1.96
43945020--43945175	82	1.9	81	88	3	233	26	15	28	29	1.96
43945016--43945196	82	2.2	81	83	2	229	27	15	27	29	1.96
43948943--43949210	48	5.6	48	76	12	182	25	29	19	25	1.99
43949137--43949349	46	4.6	45	79	11	193	23	29	19	28	1.98
43949180--43949352	94	1.9	91	84	10	235	21	29	20	28	1.98
43952066--43952119	28	1.9	28	96	0	99	42	22	7	27	1.80
43959742--43959789	24	2.0	24	84	8	62	27	2	27	43	1.66
43960514--43960674	85	1.9	86	83	3	209	45	20	12	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43960518--43960710	43	4.5	43	78	3	174	45	20	12	22	1.84
43962629--43962675	16	2.9	16	78	12	60	38	4	27	29	1.76
43966338--43966373	17	2.1	17	100	0	72	25	0	38	36	1.56
43966498--43966540	11	3.9	11	78	9	52	69	2	0	27	1.00
43969123--43969167	20	2.3	20	85	11	58	33	0	11	55	1.35
43974662--43974736	31	2.5	30	82	6	80	41	8	25	25	1.82
43974725--43974797	29	2.5	29	90	2	110	41	12	31	15	1.84
43974690--43974797	30	3.6	30	82	7	114	41	12	28	17	1.85
43974662--43974867	30	6.9	30	74	7	107	37	12	25	24	1.90
43975083--43975135	26	2.0	26	100	0	106	43	15	11	30	1.81
43977010--43977191	47	3.9	47	89	0	265	28	32	9	29	1.88
43983453--43983637	79	2.3	82	84	7	238	25	27	22	24	2.00
43983434--43983637	40	5.1	40	82	8	238	25	27	22	25	2.00
43986858--43987001	78	1.8	78	96	0	270	24	13	20	40	1.89
44007703--44007869	67	2.5	66	81	7	169	31	16	29	22	1.96
44007727--44007910	67	2.8	64	77	8	194	29	16	30	23	1.96
44009849--44010018	93	1.8	93	89	0	268	28	28	19	23	1.98
44009849--44010015	46	3.6	46	70	13	153	29	28	19	23	1.98
44010736--44010903	86	2.0	86	95	2	302	39	19	7	33	1.79
44020434--44020665	43	5.4	43	97	0	446	23	14	34	27	1.93
44020647--44020720	29	2.6	29	89	4	105	25	16	32	25	1.96
44021033--44021293	40	6.5	40	81	3	278	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44024828--44025262	47	9.1	47	84	3	555	31	10	31	27	1.89
44024846--44025262	96	4.3	96	95	1	703	31	9	31	27	1.89
44026186--44026270	42	2.0	42	100	0	170	42	7	17	32	1.76
44030848--44031015	46	3.6	46	75	10	189	27	27	21	23	1.99
44030849--44031019	93	1.8	93	93	0	297	28	27	21	22	1.99
44031437--44031496	30	2.0	30	86	0	84	30	25	6	38	1.81
44035160--44035220	30	2.0	30	87	0	86	39	6	22	31	1.80
44035931--44036102	67	2.6	66	81	7	170	31	16	29	22	1.96
44035955--44036126	67	2.7	64	77	7	195	27	16	30	24	1.97
44042621--44042683	33	1.9	33	90	0	99	17	22	12	47	1.81
44042626--44042697	33	2.2	33	85	5	92	18	18	13	50	1.79
44042856--44043086	109	2.1	109	83	1	284	24	25	13	37	1.92
44045521--44045550	15	1.9	16	93	6	53	43	0	0	56	0.99
44047652--44047687	17	2.1	17	94	0	63	36	11	5	47	1.63
44064100--44064277	27	6.6	26	82	6	178	26	15	28	29	1.96
44064101--44064256	82	1.9	81	86	3	224	26	16	28	28	1.97
44064097--44064277	82	2.2	81	82	2	220	27	16	27	29	1.97
44064182--44064288	27	3.9	27	85	1	70	26	14	28	30	1.95
44068632--44068797	40	4.2	40	91	0	253	27	25	24	23	2.00
44070176--44070201	13	2.0	13	100	0	52	61	7	0	30	1.24
44072940--44073029	29	3.1	29	91	1	137	31	28	12	27	1.93
44073242--44073284	16	2.7	16	85	0	50	9	13	16	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44079994--44080157	24	6.7	24	73	6	114	19	25	21	33	1.97
44080754--44080793	21	1.9	21	85	10	55	35	0	27	37	1.57
44090198--44090260	32	2.0	31	96	0	108	26	23	9	38	1.86
44093822--44094083	40	6.6	40	89	1	393	23	22	25	29	1.99
44121986--44122048	16	4.1	16	80	12	78	55	3	0	41	1.16
44121990--44122049	8	7.6	8	71	17	54	53	3	0	43	1.17
44122184--44122229	21	2.2	21	88	7	67	34	0	34	30	1.58
44122190--44122235	14	3.3	14	82	11	58	39	0	30	30	1.57
44122197--44122275	7	11.4	7	76	2	52	44	2	25	27	1.67
44126219--44126396	27	6.6	27	80	5	162	29	28	16	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310