genome.fa.s13.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  98  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31460342--31460466	22	5.8	22	68	12	71	42	38	0	18	1.56
31460327--31460458	7	18.6	7	71	16	58	41	38	1	18	1.60
31462389--31462417	15	2.0	15	93	6	51	48	27	13	10	1.75
31465543--31465577	17	2.0	17	88	5	52	54	0	0	45	0.99
31468764--31468815	24	2.2	24	100	0	104	7	5	44	42	1.57
31471510--31471622	57	2.0	56	84	1	145	39	15	15	28	1.89
31472018--31472052	18	2.0	17	94	5	61	42	0	0	57	0.99
31472092--31472116	11	2.3	11	100	0	50	36	8	8	48	1.62
31474308--31474643	170	2.0	170	98	0	645	31	11	22	35	1.89
31485621--31485645	7	3.6	7	100	0	50	12	0	0	88	0.53
31503773--31503855	41	2.0	41	95	0	148	42	9	16	31	1.81
31513461--31513488	8	3.5	8	100	0	56	21	35	14	28	1.92
31514468--31514507	14	2.8	14	80	3	53	15	5	0	80	0.88
31514498--31514571	13	6.5	12	71	21	52	39	0	0	60	0.97
31514504--31514534	10	3.2	10	90	9	55	38	0	0	61	0.96
31514507--31514574	22	3.0	22	75	12	66	44	0	0	55	0.99
31514628--31514671	20	2.2	19	84	8	52	38	0	2	59	1.10
31514627--31514675	21	2.4	19	80	12	53	40	0	2	57	1.10
31514636--31514729	35	2.8	34	74	17	97	40	3	4	52	1.37
31518092--31518306	46	4.6	48	76	8	183	28	20	27	23	1.99
31518092--31518306	94	2.3	93	82	4	245	28	20	27	23	1.99
31518324--31518447	49	2.5	49	77	11	128	29	18	27	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31518189--31518450	142	1.9	138	80	6	312	28	18	28	24	1.98
31528149--31528409	48	5.5	48	80	6	284	29	21	27	21	1.98
31528152--31528368	94	2.3	93	87	6	321	29	21	28	20	1.98
31528149--31528409	142	1.9	140	86	4	373	29	21	27	21	1.98
31528150--31528549	48	8.4	49	73	9	208	27	20	29	23	1.99
31530326--31530646	50	6.5	50	82	2	362	24	28	19	27	1.99
31534123--31534195	38	1.9	38	97	0	137	34	17	24	23	1.96
31534316--31534404	46	1.9	46	84	4	117	43	15	22	17	1.87
31534165--31534481	165	1.9	165	100	0	634	40	15	22	21	1.91
31534665--31534711	25	2.0	25	83	8	62	53	4	14	27	1.60
31541669--31541895	100	2.3	100	86	1	312	22	26	20	29	1.99
31541625--31541901	150	1.9	148	81	4	342	23	25	21	29	1.99
31541625--31541901	50	5.6	50	81	3	283	23	25	21	29	1.99
31548385--31548437	18	2.9	18	82	0	52	37	15	11	35	1.83
31554632--31554704	30	2.4	30	86	0	101	32	20	23	23	1.98
31557339--31557394	24	2.3	24	87	0	76	33	5	7	53	1.51
31557416--31557462	23	2.2	20	88	11	67	12	10	0	76	1.02
31557653--31557705	26	2.0	26	89	7	81	79	3	11	5	1.03
31557637--31557726	8	9.8	9	69	17	51	78	3	7	10	1.05
31557656--31557722	26	2.6	25	81	13	73	79	4	10	5	1.05
31557665--31557737	36	2.0	36	86	10	103	76	5	12	5	1.12
31566262--31566363	40	2.6	40	86	7	129	24	23	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31580140--31580246	26	4.2	26	90	2	171	33	7	24	34	1.83
31580140--31580246	51	2.1	52	92	1	180	33	7	24	34	1.83
31597572--31597601	15	2.0	15	100	0	60	6	20	6	66	1.38
31600090--31600134	23	2.0	23	100	0	90	22	8	24	44	1.81
31600842--31600949	26	4.2	26	93	0	189	31	6	25	37	1.81
31604405--31604432	14	2.0	14	100	0	56	50	7	14	28	1.69
31606844--31607110	47	5.7	48	72	12	189	25	19	31	23	1.98
31606844--31607110	141	1.9	139	82	7	335	25	19	31	23	1.98
31610678--31610751	27	2.7	27	85	4	96	33	13	25	27	1.93
31617527--31617602	37	2.1	36	83	11	93	56	2	0	40	1.13
31619215--31619245	15	2.1	15	93	0	53	67	9	6	16	1.39
31622855--31622890	17	2.1	17	94	0	63	36	0	11	52	1.37
31622485--31623275	262	3.0	265	89	4	1211	41	4	15	38	1.69
31625901--31625999	35	2.9	35	95	1	182	20	13	30	36	1.90
31627297--31627511	46	4.6	47	78	9	206	29	20	26	24	1.99
31627297--31627511	94	2.3	94	84	3	272	29	20	26	24	1.99
31627492--31627663	49	3.5	49	77	7	156	28	20	27	23	1.99
31632402--31632714	27	11.6	27	85	1	403	39	21	8	30	1.83
31632402--31632772	54	6.9	54	86	0	458	38	21	8	31	1.83
31632402--31632799	81	4.9	81	80	4	410	38	21	9	30	1.84
31632402--31632770	27	13.7	27	80	5	336	39	21	8	31	1.83
31632754--31632920	27	6.2	27	88	0	217	36	19	18	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31632754--31632949	54	3.6	54	83	0	232	35	19	19	25	1.95
31633375--31633439	22	3.0	22	84	8	87	21	21	21	35	1.96
31633598--31633699	27	3.8	27	84	5	116	17	22	21	38	1.93
31633836--31633938	31	3.3	31	83	1	125	20	15	13	50	1.77
31645532--31646003	222	2.1	223	85	3	632	42	13	13	30	1.82
31655773--31655797	8	3.1	8	100	0	50	36	0	16	48	1.46
31658601--31658639	19	2.1	19	90	0	60	41	0	12	46	1.42
31661912--31661952	22	1.9	21	90	5	64	7	2	17	73	1.17
31672642--31672853	40	5.3	40	87	3	277	23	20	27	28	1.99
31676917--31676981	31	2.0	33	88	5	98	15	32	27	24	1.95
31681998--31682176	52	3.5	52	84	6	208	28	13	30	27	1.95
31688536--31688605	21	3.3	21	87	0	104	22	25	34	17	1.96
31688730--31688786	27	2.1	27	83	6	71	19	29	24	26	1.98
31700267--31700301	18	1.9	18	88	0	52	31	8	25	34	1.86
31700870--31701162	26	11.3	26	85	2	369	29	22	20	27	1.99
31700910--31701162	78	3.2	78	95	0	434	29	22	20	27	1.98
31701212--31701286	20	3.8	20	91	6	111	34	18	9	37	1.83
31701212--31701267	11	5.5	11	71	16	57	32	19	10	37	1.86
31701229--31701285	9	5.8	10	76	15	57	35	19	8	36	1.83
31701314--31701361	25	1.9	25	86	0	69	27	14	22	35	1.93
31709114--31709250	26	5.3	26	84	4	154	28	24	20	27	1.99
31709300--31709356	20	3.0	20	90	10	84	35	19	8	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31709308--31709356	5	10.2	5	75	16	50	36	20	6	36	1.78
31709300--31709353	9	5.5	10	75	16	51	35	18	9	37	1.83
31713347--31713376	12	2.5	12	88	0	51	6	6	10	76	1.15
31719292--31719405	59	1.9	59	89	3	176	33	27	14	24	1.95
31719347--31719512	50	3.3	49	83	3	206	30	27	15	25	1.96
31724483--31724547	30	2.2	29	91	2	103	24	15	21	38	1.92
31730925--31730997	29	2.5	29	81	0	83	28	30	10	30	1.91
31731089--31731134	9	4.9	9	84	7	56	15	36	13	34	1.86
31731089--31731134	19	2.4	19	85	7	67	15	36	13	34	1.86
31734780--31735004	49	4.5	49	79	9	267	29	26	17	26	1.97
31734780--31735011	100	2.3	98	83	7	281	28	27	17	26	1.98
31735258--31735311	27	2.0	27	85	0	72	38	14	7	38	1.75
31736989--31737205	108	2.0	109	97	0	409	29	24	9	35	1.87
31745457--31745538	40	2.0	40	92	0	137	50	12	17	20	1.78
31748201--31748286	42	2.0	42	100	0	172	27	18	6	46	1.75
31753517--31753562	16	2.9	16	83	0	56	45	10	26	17	1.81
31753509--31753554	24	1.9	24	90	0	74	45	10	23	19	1.82
31753509--31753560	24	2.2	24	85	0	68	46	13	23	17	1.83
31753533--31753568	16	2.2	16	90	0	54	50	13	22	13	1.77
31753778--31753892	29	4.0	29	85	6	146	26	14	29	28	1.95
31768340--31768451	27	4.1	27	82	10	131	35	22	25	16	1.95
31768340--31768454	54	2.1	54	87	3	160	35	22	25	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31768870--31768900	8	3.9	8	91	0	53	3	22	25	48	1.66
31770469--31770827	46	7.8	46	98	0	682	20	20	28	30	1.98
31779029--31779105	38	2.0	38	89	0	118	27	40	20	11	1.87
31782333--31782455	34	3.6	34	88	0	165	20	24	20	34	1.96
31794686--31794764	37	2.2	37	90	2	124	63	3	18	13	1.45
31797637--31797746	23	4.8	23	75	7	98	34	20	22	22	1.97
31797632--31797746	45	2.5	46	81	8	128	34	19	22	23	1.96
31800170--31800301	65	2.0	65	92	0	219	27	10	21	40	1.86
31805162--31805209	25	1.9	25	86	0	69	39	6	12	41	1.68
31809830--31809880	25	2.0	25	92	0	84	39	5	17	37	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310