genome.fa.s13.2.7.7.80.10.50.1000.292.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  292  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96162529--96162591	23	2.8	22	73	22	67	57	6	0	36	1.24
96163184--96163257	21	3.3	21	73	14	76	44	24	1	29	1.62
96163168--96163257	46	2.0	46	90	0	144	43	24	2	30	1.66
96163239--96163271	14	2.4	14	100	0	66	45	15	0	39	1.46
96163433--96163691	41	6.4	41	87	3	337	16	22	23	37	1.93
96163433--96163691	81	3.2	81	87	2	342	16	22	23	37	1.93
96163433--96163692	122	2.1	122	86	2	362	16	21	23	38	1.93
96163635--96163714	40	2.0	41	85	2	108	18	18	18	43	1.88
96167364--96167489	49	2.6	49	81	5	139	22	27	19	30	1.97
96182319--96182478	43	3.7	42	74	8	126	31	26	16	25	1.96
96182319--96182461	43	3.3	43	78	4	137	31	26	16	25	1.97
96182319--96182478	86	1.9	85	82	8	200	31	26	16	25	1.96
96188144--96188332	48	4.0	47	81	2	209	24	28	17	29	1.98
96191773--96191852	15	5.4	15	75	12	76	58	13	17	10	1.62
96191784--96191861	15	5.2	15	73	14	63	56	15	16	11	1.67
96198129--96198163	18	2.0	18	88	5	54	28	14	20	37	1.91
96199206--96199309	29	3.7	29	84	7	133	28	30	14	25	1.95
96202585--96202651	20	3.3	20	75	19	75	62	14	2	19	1.44
96202584--96202663	41	2.0	41	90	5	126	60	16	2	21	1.48
96202774--96202812	15	2.6	15	87	0	51	61	5	2	30	1.31
96203679--96203818	29	4.9	29	87	4	194	27	30	16	25	1.97
96203820--96203861	18	2.4	17	88	4	57	40	28	0	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96206038--96206194	43	3.7	42	78	8	147	31	26	17	24	1.97
96208653--96208687	12	2.8	12	91	4	52	20	2	11	65	1.37
96212035--96212063	13	2.2	13	100	0	58	31	0	13	55	1.39
96218851--96218887	20	1.9	18	89	10	56	43	0	21	35	1.53
96225571--96225647	29	2.7	28	88	6	102	27	15	28	28	1.96
96225584--96225647	28	2.2	29	91	2	103	29	15	25	29	1.96
96228197--96228259	27	2.3	27	88	0	90	38	17	17	26	1.92
96228638--96228698	28	2.2	28	81	0	68	24	21	22	31	1.98
96234819--96234849	16	2.0	15	93	6	53	25	32	19	22	1.97
96245708--96245733	13	2.0	13	100	0	52	30	0	7	61	1.24
96248059--96248275	22	9.3	22	65	25	90	35	12	27	24	1.92
96248082--96248253	23	7.2	24	63	22	69	34	11	26	26	1.91
96248033--96248278	47	5.2	47	93	0	411	35	11	27	25	1.91
96248292--96248382	46	2.0	46	84	0	119	34	5	31	28	1.80
96256578--96256628	27	1.9	26	84	4	66	19	27	17	35	1.94
96258102--96258140	21	1.9	21	89	5	62	28	10	0	61	1.28
96267162--96267283	27	4.5	27	86	3	165	43	22	8	25	1.81
96267239--96267313	27	2.8	27	85	0	87	41	20	5	33	1.75
96267301--96267607	27	11.4	27	87	0	425	36	19	19	24	1.95
96267302--96267607	54	5.7	54	92	0	468	36	19	19	24	1.95
96268339--96268398	27	2.3	27	85	2	77	21	23	20	35	1.96
96271478--96271503	11	2.4	11	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96274710--96274808	33	3.0	33	76	5	101	27	24	21	27	1.99
96274992--96275083	27	3.4	27	78	1	96	34	20	21	22	1.96
96275246--96275308	27	2.3	27	86	5	83	25	20	14	39	1.90
96276835--96276859	12	2.1	12	100	0	50	68	16	8	8	1.38
96279141--96279239	33	3.0	33	84	0	144	27	28	20	24	1.99
96279650--96279798	27	5.4	27	79	6	163	26	17	21	34	1.95
96280876--96280935	27	2.3	26	85	2	75	21	23	20	35	1.96
96300307--96300375	29	2.4	29	87	0	102	23	39	21	15	1.92
96308677--96308767	42	2.1	43	85	4	130	24	2	47	26	1.63
96309270--96309414	76	1.9	76	80	5	168	28	12	10	48	1.74
96322119--96322316	77	2.5	80	87	8	294	27	6	17	47	1.72
96324867--96324927	30	2.0	30	83	0	77	31	22	8	37	1.84
96332059--96332100	18	2.4	18	84	4	59	21	9	0	69	1.17
96333653--96333677	4	6.2	4	100	0	50	76	0	0	24	0.80
96336787--96336848	27	2.3	27	85	0	79	41	12	20	24	1.87
96340406--96340466	30	2.0	30	87	6	88	19	21	32	26	1.97
96343197--96343317	47	2.6	47	97	0	224	34	6	28	29	1.83
96350058--96350427	47	7.8	46	70	10	171	27	19	28	23	1.98
96350061--96350234	94	1.9	94	90	2	278	27	20	29	22	1.98
96351161--96351277	55	2.1	55	90	3	182	20	23	30	25	1.98
96354511--96354544	16	2.1	16	100	0	68	35	11	0	52	1.38
96360847--96360964	61	2.0	60	89	1	182	33	2	9	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96360852--96360956	31	3.4	31	70	12	99	33	2	7	56	1.43
96363520--96363571	18	2.8	18	85	14	70	69	0	28	1	0.99
96363523--96363569	25	1.9	25	86	4	69	70	0	27	2	0.99
96366532--96366572	19	2.2	19	86	4	57	29	4	0	65	1.13
96366532--96366583	19	3.0	18	81	13	56	32	3	0	63	1.12
96368028--96368086	24	2.5	24	91	0	91	16	16	33	32	1.92
96367768--96368188	171	2.4	172	86	4	553	18	21	27	33	1.96
96368229--96368287	24	2.5	24	85	0	82	16	18	32	32	1.94
96372212--96372293	26	3.2	26	86	6	121	32	3	23	40	1.72
96377769--96377839	34	2.1	35	97	2	135	35	16	33	14	1.89
96385800--96385842	21	2.0	22	90	4	70	53	2	0	44	1.13
96385933--96385973	13	2.9	14	77	22	50	53	0	2	43	1.13
96389958--96390021	31	2.1	31	93	0	110	40	6	26	26	1.79
96390880--96391091	57	3.7	56	71	7	185	31	15	18	34	1.92
96390837--96391095	115	2.3	115	91	0	410	30	16	18	33	1.94
96396120--96396295	23	7.7	23	82	5	203	28	24	21	25	1.99
96397873--96397902	15	2.1	15	93	6	53	30	6	26	36	1.82
96399792--96399940	43	3.5	43	69	14	119	30	18	26	25	1.98
96401390--96401455	30	2.2	30	97	0	123	15	24	37	22	1.92
96406400--96406621	23	9.7	23	83	5	261	30	24	20	24	1.99
96406416--96406621	46	4.5	46	90	1	306	30	25	20	23	1.99
96412896--96413039	40	3.4	42	72	16	109	29	15	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96419055--96419341	39	7.3	39	81	6	292	11	30	31	26	1.92
96419055--96419341	117	2.4	118	83	5	357	11	30	31	26	1.92
96419056--96419344	78	3.7	78	82	4	339	11	30	30	26	1.92
96426207--96426261	28	2.0	28	100	0	110	45	21	10	21	1.82
96438500--96438622	35	3.5	36	75	10	121	43	19	8	27	1.81
96445703--96445816	35	3.3	34	74	9	113	43	19	8	28	1.80
96455417--96455537	54	2.2	54	95	0	215	57	6	8	28	1.53
96455689--96455719	16	1.9	16	93	0	53	35	0	0	64	0.94
96460451--96460510	31	1.9	31	82	0	75	46	10	8	35	1.67
96461638--96461696	18	3.2	18	78	4	64	62	5	1	30	1.26
96462237--96462269	11	3.1	11	91	4	50	72	0	6	21	1.05
96462245--96462289	20	2.2	21	88	4	65	71	2	2	24	1.09
96466631--96466960	100	3.3	100	92	1	511	26	19	25	28	1.99
96466837--96466917	25	3.2	26	65	25	64	28	14	25	30	1.95
96466629--96466968	150	2.3	150	86	2	452	26	19	25	28	1.99
96466629--96466960	49	6.7	50	81	5	404	26	19	25	28	1.99
96466731--96467006	150	1.8	150	86	3	403	27	19	25	27	1.99
96469573--96469635	30	2.1	30	96	0	117	23	3	15	57	1.53
96470732--96470761	2	15.5	2	93	6	53	46	0	0	53	1.00
96472029--96472067	19	2.1	19	95	0	69	51	10	23	15	1.73
96475545--96475573	14	2.0	15	93	6	51	48	20	6	24	1.74
96476992--96477050	25	2.3	26	88	8	86	27	18	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96478776--96478950	46	3.8	44	78	15	151	29	19	29	22	1.98
96488917--96489108	40	4.8	40	87	2	278	25	28	22	24	2.00
96490378--96490478	37	2.7	37	96	0	184	24	30	18	25	1.98
96490597--96492445	47	38.8	46	94	3	2754	30	29	7	33	1.84
96501002--96501248	40	6.2	40	93	3	394	24	27	23	23	2.00
96506819--96507015	50	3.9	50	82	1	234	25	19	26	28	1.99
96512336--96512552	46	4.7	44	80	10	211	22	28	20	28	1.99
96512287--96512566	94	3.0	92	73	9	246	24	28	19	27	1.99
96515858--96515983	46	2.8	44	84	9	137	28	19	29	22	1.98
96523565--96523618	25	2.2	25	82	0	63	33	27	14	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310