genome.fa.s13.2.7.7.80.10.50.1000.285.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  285  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93859543--93859581	20	2.0	20	89	0	60	58	0	0	41	0.98
93860213--93860443	43	5.0	43	83	13	273	53	12	0	33	1.42
93860318--93860503	9	21.0	9	66	16	59	48	16	1	33	1.53
93860327--93860443	46	2.6	44	88	6	182	52	14	0	31	1.47
93860246--93860474	52	4.7	48	81	12	261	51	13	0	34	1.45
93860235--93860474	97	2.5	96	88	3	329	51	13	0	34	1.45
93866039--93866069	15	2.0	16	93	6	55	32	16	51	0	1.44
93866048--93866087	21	1.9	21	89	0	62	32	20	47	0	1.50
93866335--93866413	31	2.5	31	81	8	79	18	3	16	60	1.50
93871504--93871584	41	2.0	41	100	0	162	24	22	14	38	1.92
93871676--93871711	17	2.1	17	89	0	54	66	0	0	33	0.92
93872355--93872413	16	3.9	16	78	10	61	32	5	6	55	1.48
93872518--93872591	31	2.4	28	79	16	76	47	13	6	32	1.69
93874565--93874660	28	3.5	28	76	5	79	41	32	5	20	1.75
93874674--93874784	7	16.1	7	75	14	72	41	29	0	28	1.56
93874673--93874782	55	2.0	55	98	0	211	41	30	0	28	1.56
93874764--93874857	47	2.0	47	95	0	170	32	20	15	30	1.94
93874983--93875016	18	1.9	18	88	5	52	50	0	0	50	1.00
93877437--93877488	15	3.3	15	75	17	52	55	1	0	42	1.10
93897026--93897077	17	2.8	20	78	18	60	48	3	0	48	1.20
93901942--93901998	29	1.9	30	82	10	73	35	0	1	63	1.05
93905969--93906065	50	1.9	50	85	0	131	34	15	16	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93907390--93907425	13	2.8	13	82	0	54	19	8	8	63	1.47
93913707--93913739	17	1.9	17	88	11	50	48	0	3	48	1.17
93917209--93917249	21	2.0	21	90	0	64	19	29	21	29	1.98
93920262--93920495	48	4.8	48	82	7	265	23	41	15	20	1.90
93925972--93926031	31	1.9	32	89	3	95	48	3	8	40	1.50
93938633--93938671	20	2.0	20	95	5	71	61	2	0	35	1.10
93940064--93940132	31	2.4	28	79	13	77	36	10	11	42	1.75
93950657--93950710	20	2.6	21	85	11	76	35	0	5	59	1.21
93950662--93950726	19	3.3	20	83	8	71	33	1	3	61	1.21
93950696--93950744	3	17.3	3	76	19	52	28	2	0	69	1.00
93950700--93950738	11	3.5	11	92	0	69	28	2	0	69	1.02
93952892--93953021	23	5.5	23	74	11	102	16	26	23	33	1.96
93954948--93954990	21	2.0	21	90	0	68	6	20	2	69	1.23
93956508--93956609	51	2.0	51	100	0	204	27	19	13	39	1.90
93964434--93964502	28	2.4	29	79	13	90	44	1	0	53	1.09
93964452--93964511	24	2.5	24	79	15	70	48	3	0	48	1.18
93969749--93969789	19	2.1	20	86	4	57	31	9	2	56	1.45
93970784--93970826	15	2.9	15	86	6	61	58	6	2	32	1.38
93976764--93976847	29	2.8	29	74	13	82	52	4	7	35	1.50
93988959--93989155	54	3.6	54	82	4	236	36	17	24	21	1.94
93988967--93989190	108	2.1	109	84	4	292	37	16	25	20	1.94
93997776--93997822	23	2.0	23	95	0	85	27	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94004354--94004412	29	2.0	29	100	0	118	23	32	27	16	1.96
94005012--94005051	17	2.4	17	91	0	62	22	10	10	57	1.61
94006602--94006626	12	2.1	12	100	0	50	40	8	0	52	1.31
94007523--94007552	13	2.2	14	94	5	53	80	0	20	0	0.72
94010720--94010764	9	5.2	9	89	10	76	22	0	22	55	1.44
94010721--94010763	8	5.1	8	91	8	68	18	0	23	58	1.40
94010721--94010764	17	2.6	17	100	0	88	20	0	22	56	1.42
94014048--94014083	18	2.1	18	94	5	65	69	0	0	30	0.89
94014336--94014428	18	4.6	21	80	11	70	40	16	7	35	1.76
94014336--94014393	22	2.6	22	81	7	64	41	17	5	36	1.72
94014365--94014445	37	2.2	38	86	8	123	35	16	9	38	1.81
94014372--94014445	19	3.9	19	92	3	123	36	14	10	37	1.82
94014564--94014603	21	2.0	20	85	5	53	10	2	15	72	1.21
94015041--94015566	82	6.4	82	96	1	914	22	20	26	30	1.98
94016517--94016571	7	7.9	7	75	20	53	1	14	1	81	0.85
94016515--94016571	21	2.8	20	81	7	69	3	14	1	80	0.92
94022220--94023131	35	26.0	35	99	0	1779	37	14	11	37	1.82
94023962--94024001	21	1.9	21	89	0	62	30	17	50	2	1.59
94024235--94024295	31	2.0	31	93	0	104	16	8	19	55	1.65
94031242--94031553	46	7.0	46	83	9	335	40	14	23	21	1.90
94031330--94031398	34	2.0	34	100	0	138	39	11	23	26	1.88
94031284--94031536	80	3.0	80	84	8	290	41	14	23	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94031241--94031490	126	2.0	126	88	0	374	39	14	24	22	1.90
94031834--94031866	17	2.0	17	94	5	59	48	0	15	36	1.45
94036335--94036445	57	1.9	57	90	0	177	21	30	14	33	1.93
94044322--94044360	17	2.3	17	100	0	78	10	17	10	61	1.55
94049964--94050025	31	2.0	31	93	0	106	45	14	8	32	1.74
94050666--94050704	17	2.2	18	86	4	53	33	10	7	48	1.66
94051246--94051293	11	4.4	11	81	5	53	37	0	2	60	1.09
94053856--94053903	24	2.0	24	100	0	96	37	12	12	37	1.81
94056303--94056333	5	6.2	5	100	0	62	19	0	0	80	0.71
94056400--94056496	48	2.0	48	97	0	185	36	6	12	45	1.67
94067336--94067602	132	2.0	132	86	1	365	35	17	18	28	1.93
94077493--94077525	17	1.9	17	93	0	57	45	15	9	30	1.77
94078844--94079133	148	2.0	148	90	0	463	41	13	15	30	1.85
94080442--94080507	6	10.7	6	79	12	53	75	7	3	13	1.13
94082547--94082585	17	2.2	17	90	4	60	51	10	7	30	1.64
94084025--94084826	2	401.0	2	100	0	1604	50	50	0	0	1.00
94091475--94091526	4	13.5	4	90	8	81	19	0	1	78	0.84
94091475--94091536	12	5.3	11	88	7	79	20	0	1	77	0.85
94092240--94092303	21	3.2	21	70	20	64	40	21	26	10	1.86
94092252--94092314	19	3.3	19	73	20	67	38	23	28	9	1.86
94092222--94092321	39	2.6	39	93	1	166	38	24	26	12	1.90
94094674--94094706	3	11.0	3	100	0	66	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94097749--94097804	25	2.2	25	87	6	78	17	26	21	33	1.96
94100026--94100056	5	6.2	5	100	0	62	19	0	0	80	0.71
94100706--94100774	31	2.2	31	89	5	104	27	33	27	11	1.91
94100717--94100777	31	2.0	31	96	0	113	26	29	31	13	1.93
94104319--94104355	9	4.1	9	86	13	58	32	10	10	45	1.74
94104406--94104440	18	1.9	18	94	0	61	42	20	5	31	1.75
94104768--94104811	20	2.3	18	84	7	52	22	29	34	13	1.93
94105072--94105132	21	2.8	22	72	18	56	22	0	26	50	1.49
94105157--94105342	7	26.7	7	70	10	69	20	0	27	51	1.48
94105157--94105342	13	13.4	14	70	13	98	20	0	27	51	1.48
94105197--94105230	16	2.1	16	88	0	50	23	0	11	64	1.26
94105221--94105304	40	2.1	41	84	6	109	16	0	29	53	1.43
94106855--94106933	33	2.4	32	79	6	86	24	24	17	34	1.96
94109929--94109985	18	3.2	18	78	14	64	77	0	22	0	0.77
94109925--94109969	23	2.0	22	83	12	56	77	0	22	0	0.76
94109906--94109985	33	2.3	33	83	12	90	75	0	23	1	0.88
94111560--94111606	25	2.0	25	83	8	62	27	14	4	53	1.60
94111877--94112094	46	4.7	47	90	2	320	22	23	14	39	1.90
94116254--94116304	19	2.9	16	78	18	57	37	9	15	37	1.81
94116265--94116306	19	2.1	21	91	8	70	38	9	16	35	1.81
94119193--94119246	28	1.9	28	88	0	81	42	0	16	40	1.48
94121850--94122233	212	1.8	212	95	0	705	43	6	11	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94122343--94123223	210	4.2	210	98	0	1676	43	7	10	38	1.69
94123328--94123401	29	2.5	29	86	4	94	50	14	14	20	1.78
94125290--94125483	96	2.0	96	86	0	271	13	33	17	35	1.89
94137226--94137363	70	2.0	70	98	0	267	23	21	10	44	1.83
94145936--94146793	67	12.8	67	99	0	1664	20	32	17	28	1.96
94147561--94147621	30	2.0	30	83	0	77	31	22	8	37	1.84
94154286--94154366	41	2.0	41	95	0	144	24	35	13	25	1.92
94158413--94158597	79	2.3	81	84	7	236	25	27	22	24	2.00
94158413--94158597	40	4.7	40	83	7	234	25	27	22	24	2.00
94158769--94158863	48	2.0	48	95	0	172	23	21	20	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310