genome.fa.s13.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  95  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30411902--30411942	22	1.9	21	85	5	55	21	2	0	75	0.92
30412737--30412785	16	2.9	17	81	9	64	34	2	2	61	1.19
30419340--30419370	3	10.7	3	93	6	55	0	32	0	67	0.91
30428991--30429032	22	2.1	19	86	13	57	52	0	2	45	1.13
30429095--30429151	30	1.9	30	85	7	80	45	12	8	33	1.72
30433338--30433471	67	2.0	67	94	0	232	17	24	17	39	1.92
30438358--30438431	34	2.2	33	87	2	103	31	2	2	63	1.22
30438370--30438434	15	4.1	15	77	13	67	29	1	3	66	1.16
30439074--30439117	12	3.7	12	93	0	79	40	0	31	27	1.56
30462950--30463023	6	11.8	6	91	5	103	68	2	14	13	1.31
30462950--30463023	19	3.9	19	89	3	114	68	2	14	13	1.31
30483202--30483473	47	5.8	47	73	12	170	25	27	19	28	1.98
30483344--30483511	46	3.6	46	76	9	171	25	27	18	27	1.98
30483344--30483513	94	1.8	92	83	7	227	25	27	18	27	1.98
30500750--30500786	18	2.1	18	100	0	74	24	16	0	59	1.37
30506435--30506651	46	4.6	46	77	8	190	29	18	29	23	1.98
30506432--30506698	94	2.9	94	77	11	255	28	18	28	23	1.98
30506435--30506698	47	5.6	45	77	10	194	29	18	28	23	1.98
30511826--30511869	23	1.9	23	85	0	61	36	6	11	45	1.67
30513318--30513465	48	3.1	48	91	0	233	37	8	24	30	1.84
30519011--30519052	21	2.0	21	81	9	50	23	14	40	21	1.90
30521235--30521293	29	2.0	30	86	3	84	30	25	6	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30523473--30523520	24	2.0	24	95	0	87	39	14	29	16	1.88
30525157--30525196	20	2.0	20	85	5	53	45	0	0	55	0.99
30525148--30525201	26	2.1	26	82	0	63	48	0	0	51	1.00
30526634--30526690	25	2.4	23	83	13	71	33	3	7	56	1.43
30528924--30528960	17	2.2	17	100	0	74	0	54	5	40	1.24
30533158--30533366	102	2.0	101	97	1	391	36	19	15	28	1.93
30533456--30533845	196	2.0	194	97	2	737	34	10	8	45	1.69
30536202--30536379	27	6.6	27	82	5	162	29	28	15	26	1.96
30536223--30536378	82	1.9	81	85	6	217	28	28	15	26	1.96
30538557--30538611	21	2.5	22	82	5	67	47	1	0	50	1.11
30540449--30540588	59	2.3	60	81	8	167	27	2	17	52	1.59
30540494--30540586	32	2.9	32	96	0	168	29	3	16	51	1.59
30541808--30541847	20	2.0	20	95	0	71	47	0	2	50	1.14
30541927--30541973	19	2.4	20	96	3	87	48	17	10	23	1.77
30542358--30542394	18	2.1	18	100	0	74	32	21	10	35	1.88
30543637--30543690	21	2.6	21	82	14	67	42	1	5	50	1.36
30553856--30553885	16	1.9	16	93	6	53	0	23	0	76	0.78
30561353--30561486	43	2.9	46	82	8	157	24	18	29	27	1.98
30562910--30562969	23	2.6	23	97	0	111	13	31	33	21	1.92
30565718--30566495	387	2.0	385	95	1	1414	35	12	21	30	1.90
30569039--30569210	93	1.8	93	94	0	308	27	29	21	21	1.99
30569032--30569207	46	3.8	46	79	12	207	28	28	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30569623--30569686	30	2.1	30	82	2	74	31	21	4	42	1.74
30582131--30582157	2	13.5	2	100	0	54	51	0	0	48	1.00
30586488--30586519	17	1.9	16	93	6	55	9	12	3	75	1.16
30587554--30587584	16	1.9	16	100	0	62	19	0	45	35	1.51
30588391--30588416	6	4.3	6	100	0	52	34	30	19	15	1.93
30591468--30591501	14	2.3	15	90	5	52	17	47	0	35	1.48
30606374--30606418	18	2.5	18	82	7	56	48	0	26	24	1.51
30617886--30617923	19	2.1	18	90	5	58	42	0	2	55	1.14
30617976--30618021	22	2.1	23	88	8	69	67	0	32	0	0.91
30625325--30625362	19	2.1	18	90	5	58	42	0	2	55	1.14
30625544--30625651	57	1.9	57	94	0	189	23	24	25	26	2.00
30626843--30626966	28	4.5	26	78	11	115	28	15	28	28	1.96
30633155--30633293	70	2.0	70	95	0	251	43	6	16	33	1.74
30634277--30634377	28	3.6	27	81	15	125	29	16	27	25	1.97
30634261--30634375	56	2.1	55	91	1	185	29	17	26	26	1.97
30639293--30639556	40	6.7	40	89	5	360	25	21	27	25	1.99
30639293--30639589	119	2.5	118	81	9	338	26	21	27	25	1.99
30647358--30647619	39	6.7	40	87	7	337	25	22	27	24	2.00
30653388--30653595	108	1.9	108	84	8	282	38	20	16	24	1.92
30654069--30654330	132	2.0	131	95	0	470	33	10	25	29	1.90
30654768--30654937	40	4.3	40	89	0	207	24	21	27	26	1.99
30654715--30654939	80	2.8	79	82	3	245	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30654790--30654972	79	2.3	79	81	3	215	26	20	27	25	1.99
30655763--30655868	54	2.0	54	98	0	203	29	9	27	33	1.88
30663609--30663692	17	4.9	17	74	0	69	45	19	10	25	1.82
30663583--30663690	51	2.1	51	85	0	144	43	17	10	28	1.82
30666131--30666181	22	2.4	21	81	15	52	35	5	1	56	1.35
30666117--30666182	31	2.1	31	83	5	80	37	6	3	53	1.41
30736655--30736682	14	2.0	14	100	0	56	28	21	7	42	1.79
30742514--30742623	26	4.2	26	95	0	193	33	4	24	37	1.76
30751651--30751827	94	1.9	94	89	0	273	27	19	31	21	1.98
30751647--30751918	48	5.8	46	73	9	165	27	19	29	23	1.98
30752668--30752799	55	2.4	55	83	5	151	22	22	28	25	1.99
30756660--30756772	43	2.6	43	79	10	133	28	27	19	24	1.99
30758359--30758530	40	4.3	40	87	2	213	25	28	21	24	1.99
30758359--30758583	80	2.8	79	80	7	231	25	28	21	24	1.99
30758515--30758592	40	1.9	41	82	10	97	26	28	20	24	1.99
30765586--30765952	47	7.8	46	73	10	188	28	20	28	22	1.99
30765589--30765903	94	3.4	94	80	5	300	28	21	27	22	1.99
30766019--30766084	33	2.0	33	93	0	114	50	0	25	24	1.50
30767977--30768002	13	2.0	13	100	0	52	46	7	7	38	1.61
30768226--30768274	20	2.7	18	77	22	57	51	4	2	42	1.32
30774539--30774569	5	6.2	5	100	0	62	61	0	0	38	0.96
30780639--30780681	18	2.3	19	88	4	61	18	2	4	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30784331--30784394	31	2.1	31	93	0	110	23	23	15	37	1.93
30784603--30784711	25	4.4	25	85	7	125	28	22	21	28	1.99
30787412--30787463	24	2.1	25	86	10	72	21	26	19	32	1.97
30795658--30795699	21	2.2	18	87	12	57	64	4	0	30	1.14
30795723--30795757	11	3.2	11	92	8	54	57	0	0	42	0.99
30797723--30798221	206	2.4	207	87	1	698	28	21	18	31	1.97
30799836--30799929	39	2.4	39	90	3	143	26	29	24	19	1.98
30799900--30800052	60	2.5	60	100	0	306	26	30	20	22	1.98
30800019--30800132	39	2.9	39	93	0	201	28	28	21	21	1.98
30800125--30800217	39	2.4	39	83	3	125	23	24	18	33	1.97
30815924--30815990	19	3.5	19	79	0	80	40	23	16	19	1.91
30824384--30824452	36	1.9	36	93	0	120	34	7	33	24	1.83
30826143--30826237	40	2.4	40	84	3	122	36	33	14	14	1.87
30829748--30829796	16	3.1	15	80	16	55	77	4	8	10	1.10
30831659--30831737	40	2.0	40	87	0	113	31	31	20	16	1.95
30835312--30835351	19	2.1	19	85	0	53	2	20	2	75	1.04
30841602--30841690	40	2.3	40	84	7	112	38	32	13	15	1.87
30843645--30843805	42	3.8	42	78	4	146	47	16	21	15	1.83
30843677--30843737	21	2.9	21	70	0	59	44	19	21	14	1.86
30843676--30843779	21	5.0	21	65	4	57	45	18	22	14	1.85
30855236--30855303	31	2.2	31	81	5	84	38	5	11	44	1.65
30855582--30855669	37	2.4	37	80	1	95	44	2	6	46	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30855941--30856027	37	2.3	37	80	2	93	24	11	11	52	1.70
30856006--30856143	37	3.7	37	81	0	141	18	22	13	45	1.84
30858985--30859030	5	9.2	5	95	0	83	39	19	0	41	1.52
30860603--30860702	30	3.4	30	72	4	87	34	20	3	43	1.67
30860909--30860980	28	2.7	26	77	12	74	68	13	5	12	1.38
30860919--30860980	28	2.3	27	86	8	81	67	14	3	14	1.35
30861759--30861790	16	2.1	15	94	5	55	40	6	6	46	1.54
30861909--30861955	23	1.9	23	83	12	58	36	6	4	53	1.46
30869524--30869971	77	6.1	72	81	11	412	33	16	18	31	1.94
30869529--30870182	143	4.3	147	78	12	523	32	17	18	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310