genome.fa.s13.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  147  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48005363--48005575	76	2.7	79	72	20	196	33	2	7	57	1.39
48006403--48006436	15	2.3	15	89	0	50	35	2	11	50	1.54
48006383--48006443	21	3.0	20	73	22	56	34	4	8	52	1.53
48010293--48010328	16	2.2	16	95	0	63	25	19	2	52	1.59
48018631--48018813	68	2.6	74	85	6	234	32	15	20	31	1.94
48018702--48019015	172	1.9	165	84	6	414	27	16	20	35	1.94
48020113--48020163	21	2.4	21	83	9	59	3	58	0	37	1.16
48020953--48021149	20	10.6	19	66	25	86	34	2	5	57	1.34
48020929--48021011	22	3.6	23	77	11	89	37	1	2	59	1.19
48020958--48021040	36	2.3	36	84	14	109	34	2	2	60	1.23
48021064--48021150	27	3.1	27	68	19	63	34	2	4	58	1.31
48021930--48021981	19	2.6	19	84	6	68	34	1	7	55	1.39
48021952--48021985	15	2.3	15	94	0	59	35	0	11	52	1.38
48021930--48021992	21	3.1	19	81	9	72	33	1	9	55	1.42
48022186--48022251	34	1.9	34	84	6	89	22	9	9	59	1.56
48026516--48026884	3	121.7	3	68	14	134	27	8	4	59	1.47
48026975--48027008	17	2.0	17	94	0	59	35	8	0	55	1.31
48027220--48027284	13	4.7	14	73	14	55	18	7	4	69	1.31
48030006--48030036	15	2.1	15	93	0	53	48	0	0	51	1.00
48030134--48030164	16	1.9	16	93	0	53	74	0	3	22	0.96
48033972--48034051	29	2.8	29	82	1	99	43	7	32	16	1.76
48033964--48034034	28	2.5	28	86	2	97	45	7	32	15	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48033964--48034056	29	3.2	28	80	7	98	43	6	33	17	1.74
48035632--48035687	26	2.2	26	83	3	69	23	1	3	71	1.11
48035643--48035681	18	2.2	18	90	4	62	25	2	0	71	0.98
48038493--48038534	19	2.2	19	83	8	50	50	14	19	16	1.79
48039020--48039091	32	2.2	32	82	0	81	27	26	30	15	1.96
48039671--48039721	12	4.2	12	82	0	57	37	9	41	11	1.75
48039677--48039720	6	7.3	6	84	0	52	38	11	36	13	1.81
48048923--48048961	2	19.5	2	100	0	78	51	48	0	0	1.00
48055963--48056010	15	3.3	15	72	16	55	35	14	2	47	1.56
48060188--48060258	37	1.9	37	88	8	110	50	14	11	23	1.74
48068029--48068129	39	2.6	39	91	0	139	37	23	25	12	1.91
48068048--48068111	21	3.2	21	73	13	80	40	21	25	12	1.88
48071900--48071989	25	3.6	25	77	5	92	24	3	5	66	1.28
48071896--48071990	50	1.9	50	91	0	154	25	3	5	66	1.28
48072019--48072145	28	4.5	28	73	15	102	30	4	1	62	1.25
48072019--48072286	26	10.2	26	72	15	162	29	4	4	61	1.36
48072103--48072286	50	3.7	48	75	12	165	28	5	5	60	1.41
48073272--48074214	470	2.0	470	99	0	1868	25	16	17	39	1.91
48076519--48076553	15	2.2	17	90	10	56	22	0	5	71	1.07
48089590--48089643	22	2.5	21	84	3	63	29	20	18	31	1.96
48095058--48095105	13	3.6	13	75	5	51	4	29	0	66	1.10
48096516--48096691	46	3.8	45	79	12	205	21	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48096512--48096683	93	1.8	93	94	0	308	21	21	29	27	1.99
48097508--48097617	55	2.0	55	89	0	166	30	21	18	30	1.97
48098847--48099239	131	3.0	130	83	3	466	38	13	15	33	1.86
48102090--48102275	42	4.4	43	82	10	188	25	24	20	29	1.99
48102090--48102286	85	2.3	84	79	14	208	26	23	20	29	1.99
48104549--48104741	48	4.0	48	91	0	314	36	6	26	30	1.82
48106603--48106715	27	4.3	24	76	20	95	38	10	25	25	1.88
48106603--48106715	51	2.1	54	84	7	144	38	10	25	25	1.88
48113139--48113181	21	2.0	21	100	0	86	27	4	23	44	1.73
48122126--48122284	43	3.7	44	76	10	159	25	16	27	31	1.96
48131017--48131043	13	2.1	13	100	0	54	14	33	37	14	1.88
48131874--48131912	14	2.8	14	100	0	78	10	15	5	69	1.34
48152330--48152377	25	1.9	25	86	0	69	33	25	16	25	1.96
48152414--48152495	20	4.2	20	90	3	139	36	10	19	32	1.87
48152549--48152646	47	2.1	47	94	5	171	30	20	20	28	1.98
48152548--48152667	24	5.0	24	88	10	174	30	20	21	27	1.98
48152861--48152924	31	2.1	31	90	0	101	35	15	23	25	1.94
48161616--48161877	39	6.7	40	87	7	337	25	22	27	24	2.00
48164699--48164868	43	4.0	42	72	12	132	32	22	16	28	1.96
48165953--48165977	13	1.9	13	100	0	50	40	16	4	40	1.67
48174793--48174827	16	2.2	16	100	0	70	17	28	22	31	1.96
48178010--48178225	39	5.6	40	86	4	291	28	23	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48178010--48178221	76	2.7	78	87	5	279	28	23	19	28	1.98
48182576--48182713	43	3.2	43	79	9	149	30	27	16	25	1.97
48185824--48185866	21	2.0	21	82	8	52	6	6	46	39	1.58
48185899--48185960	27	2.3	27	88	5	90	17	22	25	33	1.96
48187494--48187528	16	2.2	16	100	0	70	25	14	31	28	1.95
48193890--48193919	14	2.2	14	94	5	53	33	6	20	40	1.78
48203333--48203394	31	2.0	31	96	0	115	29	24	1	45	1.63
48207199--48207228	14	2.1	15	93	6	53	43	10	0	46	1.37
48217483--48217528	21	2.1	23	88	8	69	21	47	19	10	1.80
48219036--48219080	6	7.5	6	87	0	63	13	4	2	80	0.97
48219034--48219100	30	2.2	31	82	12	77	14	7	1	76	1.08
48221992--48222024	13	2.6	13	90	4	50	30	3	12	54	1.52
48230827--48230964	69	2.0	69	100	0	276	26	26	21	26	2.00
48239760--48239857	6	17.0	6	83	10	109	18	2	0	79	0.83
48244426--48244454	14	2.0	15	93	6	51	51	20	0	27	1.47
48251281--48251358	6	12.8	6	86	8	113	50	15	16	17	1.79
48251760--48251873	27	4.3	27	83	4	133	23	21	20	34	1.97
48251829--48251982	54	2.9	53	83	3	157	27	10	21	40	1.85
48251827--48251983	27	5.8	27	78	5	138	26	11	21	40	1.87
48251885--48252015	54	2.4	54	85	0	163	31	7	20	40	1.81
48251885--48251997	27	4.2	26	77	6	82	28	8	22	40	1.83
48251950--48252089	27	5.2	27	82	1	147	40	5	19	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48252096--48252190	27	3.5	27	82	0	118	28	7	22	42	1.80
48275233--48275300	29	2.3	29	80	5	75	29	32	11	26	1.92
48275403--48275481	29	2.7	30	80	13	101	29	30	16	24	1.96
48278383--48278645	45	5.8	45	86	3	332	23	20	18	38	1.94
48280415--48280463	24	2.0	24	100	0	98	44	4	8	42	1.53
48285643--48285810	45	3.7	45	87	1	239	27	20	16	35	1.94
48285642--48285812	90	1.9	90	91	2	281	26	21	16	35	1.95
48290965--48291012	23	2.1	23	84	7	62	39	4	2	54	1.32
48291013--48291051	19	2.1	18	85	4	51	41	0	5	53	1.23
48295921--48296092	53	3.3	53	84	8	176	35	18	25	21	1.95
48296284--48296314	16	1.9	16	93	0	53	41	0	22	35	1.54
48299658--48299832	46	3.8	46	96	0	314	20	21	29	29	1.98
48307237--48307409	46	3.7	46	79	10	208	21	20	27	29	1.98
48307234--48307404	93	1.8	93	93	0	297	21	21	28	28	1.98
48310992--48311263	134	2.0	134	96	0	499	29	12	22	34	1.91
48313761--48314016	55	4.8	52	77	10	204	35	16	25	23	1.94
48313769--48313969	108	1.8	110	83	6	266	33	16	25	24	1.96
48314208--48314238	16	1.9	16	93	0	53	41	0	22	35	1.54
48317932--48318017	44	2.0	44	92	0	145	31	31	17	19	1.95
48325338--48325603	47	5.8	43	69	11	138	25	19	30	24	1.98
48325394--48325606	91	2.3	90	80	5	232	24	20	30	25	1.99
48325482--48325603	47	2.7	44	83	6	147	22	19	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48332123--48332340	47	4.7	46	72	13	160	26	19	28	25	1.99
48332123--48332392	94	2.9	94	79	7	262	27	20	28	24	1.99
48333150--48333270	55	2.2	55	81	13	144	27	22	24	25	2.00
48337055--48337225	93	1.8	93	96	0	315	28	29	21	21	1.98
48337047--48337222	46	3.8	46	80	12	225	28	28	21	21	1.98
48341283--48341409	49	2.6	49	86	2	166	24	24	18	33	1.97
48341380--48341553	46	3.7	45	81	5	168	24	24	18	32	1.97
48342203--48342253	20	2.7	18	82	14	59	37	21	0	41	1.54
48345647--48345680	18	1.9	18	88	5	52	41	5	8	44	1.60
48349051--48349084	18	1.9	18	88	5	52	41	5	8	44	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310