genome.fa.s13.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  165  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54139991--54140118	25	5.1	25	77	11	111	21	29	18	30	1.97
54140012--54140118	50	2.1	50	84	6	137	20	28	20	29	1.98
54140048--54140131	25	3.4	24	81	6	96	20	28	23	27	1.99
54140024--54140131	50	2.2	50	83	6	130	20	28	22	28	1.98
54142622--54142836	46	4.6	46	88	4	299	28	16	29	25	1.97
54142617--54142877	94	2.8	94	81	5	305	30	16	27	25	1.97
54142617--54142877	140	1.9	140	84	4	357	30	16	27	25	1.97
54142656--54143075	46	8.9	48	75	10	158	28	17	27	26	1.98
54154072--54154344	27	10.3	27	84	5	317	45	21	15	18	1.86
54154720--54154762	18	2.4	18	100	0	86	23	27	16	32	1.96
54157539--54157867	27	12.2	27	89	0	451	42	22	17	18	1.89
54162621--54162775	42	3.7	41	82	6	195	28	25	17	29	1.97
54162621--54162785	84	2.0	84	84	2	215	29	24	16	29	1.96
54169663--54169979	47	6.8	46	74	14	244	25	30	18	25	1.98
54169667--54169979	145	2.2	144	81	10	346	25	30	17	25	1.97
54175337--54176586	625	2.0	625	100	0	2500	34	16	18	30	1.93
54179346--54179426	6	13.8	6	92	3	87	18	7	0	74	1.05
54179342--54179437	12	8.0	12	87	2	95	18	6	1	73	1.09
54181470--54181509	13	3.1	13	88	0	62	15	32	37	15	1.88
54192052--54192276	40	5.7	40	87	5	278	25	28	22	24	2.00
54192052--54192276	119	1.9	120	83	6	296	25	28	22	24	2.00
54200062--54200246	79	2.3	82	84	7	238	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54200043--54200246	40	5.1	40	82	8	238	25	27	22	25	2.00
54208573--54208696	47	2.6	47	83	0	131	21	16	27	34	1.95
54210263--54210433	93	1.8	93	94	0	306	27	29	21	21	1.98
54210255--54210430	46	3.8	46	81	10	214	28	29	21	21	1.98
54212821--54212909	30	3.0	30	79	11	94	56	15	17	10	1.67
54212821--54212903	15	5.6	14	73	10	58	55	16	18	9	1.68
54212832--54212909	15	5.2	15	75	9	70	55	15	17	11	1.69
54215833--54216004	93	1.8	93	94	0	308	27	30	21	20	1.98
54215825--54216000	46	3.8	46	81	10	214	28	29	21	21	1.98
54225729--54225774	17	2.9	16	81	12	51	56	2	0	41	1.11
54225849--54225916	30	2.2	30	79	7	75	52	7	1	38	1.38
54226414--54226460	22	2.2	22	88	3	69	42	2	2	53	1.25
54228670--54228705	3	12.0	3	100	0	72	0	33	0	66	0.92
54233121--54233383	47	5.6	46	81	11	240	22	29	19	28	1.98
54233122--54233383	94	2.8	91	79	12	275	22	29	19	28	1.98
54233122--54233383	140	1.9	141	86	5	379	22	29	19	28	1.98
54235205--54235271	21	3.2	21	81	10	75	34	7	1	56	1.36
54249632--54250240	94	6.5	93	80	5	593	35	18	19	27	1.95
54249724--54249872	50	3.1	50	70	17	134	36	20	18	24	1.94
54249632--54250220	281	2.1	282	82	4	688	35	18	18	27	1.95
54249596--54250237	188	3.4	188	80	5	726	35	18	19	27	1.95
54250925--54250957	6	5.8	6	86	13	52	84	0	0	15	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54250925--54250955	16	1.9	16	100	0	62	83	0	0	16	0.64
54250925--54250957	10	2.9	12	82	17	52	84	0	0	15	0.61
54253884--54253954	33	2.1	35	82	10	85	30	19	11	38	1.87
54268809--54268855	16	2.9	16	75	9	51	27	8	12	51	1.69
54270956--54271082	63	2.0	63	95	0	227	18	20	33	27	1.96
54271324--54271383	30	2.0	30	83	6	77	56	13	1	28	1.47
54272578--54272644	33	2.0	33	100	0	134	47	11	2	37	1.56
54272578--54272633	18	3.3	18	68	14	55	42	14	3	39	1.63
54272589--54272642	16	3.3	16	70	14	56	53	9	3	33	1.50
54272590--54272645	17	3.4	17	71	14	62	55	8	3	32	1.48
54274173--54274307	67	2.0	67	98	0	261	34	29	11	24	1.90
54275203--54275370	43	3.9	43	77	6	162	33	25	14	26	1.94
54275204--54275367	86	1.9	85	80	3	186	33	25	14	26	1.94
54278246--54278279	16	2.1	16	88	5	50	8	0	14	76	1.01
54283050--54283091	20	2.1	20	100	0	84	50	14	7	28	1.69
54290643--54290704	19	3.2	18	78	13	61	22	3	3	70	1.16
54290662--54290704	21	2.0	22	91	8	72	23	0	2	74	0.93
54291550--54291608	31	1.9	31	92	0	100	38	10	6	44	1.65
54295364--54295431	25	2.7	25	84	8	93	38	17	29	14	1.90
54296907--54296951	23	2.0	22	87	8	65	71	2	2	24	1.09
54296990--54297092	10	10.4	10	73	15	63	62	1	0	34	1.13
54297580--54297685	9	11.7	9	71	19	69	33	2	0	63	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54297564--54297637	9	7.7	10	76	19	52	39	2	0	58	1.13
54297580--54297683	19	5.7	18	73	15	70	33	2	0	62	1.16
54297604--54297689	36	2.3	38	76	21	94	30	2	1	66	1.12
54303828--54303871	22	2.0	22	82	8	54	56	2	2	38	1.24
54305061--54305125	21	3.2	21	68	12	64	13	27	20	38	1.90
54305043--54305143	39	2.6	39	91	0	166	14	26	21	36	1.93
54305043--54305145	18	5.4	18	67	13	62	15	26	22	35	1.94
54313671--54313764	24	3.9	24	76	14	86	28	1	5	64	1.22
54320684--54320938	91	2.8	87	77	11	237	43	14	7	33	1.74
54322904--54322958	27	2.0	27	100	0	110	41	21	10	25	1.86
54325083--54325161	39	2.1	38	84	15	96	31	1	2	64	1.15
54325086--54325162	20	3.8	20	74	8	68	32	1	2	63	1.16
54325165--54325221	23	2.5	22	76	15	62	33	1	0	64	1.04
54332496--54332658	38	4.2	38	87	4	220	21	22	25	30	1.99
54332496--54332659	76	2.1	78	87	5	244	21	23	25	29	1.99
54332651--54332764	46	2.6	44	86	8	144	22	23	28	25	2.00
54334515--54334623	54	2.0	54	100	0	218	35	16	5	42	1.72
54337879--54338145	138	1.9	137	81	2	320	37	25	19	17	1.93
54337721--54338176	69	6.6	69	73	4	274	36	25	19	18	1.94
54338249--54338395	57	2.6	57	82	1	170	38	17	12	31	1.88
54354296--54354353	28	2.1	27	84	6	82	53	1	25	18	1.54
54355369--54355465	50	1.9	50	89	0	149	38	15	15	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54357538--54357638	53	1.9	53	82	8	125	57	4	5	31	1.44
54359316--54359733	44	9.7	45	67	14	162	28	24	18	28	1.98
54359973--54360277	88	3.5	87	83	4	389	29	20	20	29	1.98
54360098--54360241	44	3.3	44	68	9	114	30	20	20	28	1.98
54360295--54361113	130	6.3	130	85	2	980	26	22	21	30	1.99
54360371--54360749	86	4.4	86	73	6	300	26	22	21	29	1.99
54360420--54360789	86	4.3	87	73	7	295	25	22	22	30	1.99
54360322--54361053	44	16.8	44	69	8	284	25	22	20	30	1.98
54360370--54361190	261	3.1	262	88	2	1098	25	23	20	30	1.99
54360980--54361095	44	2.6	44	79	5	119	25	25	20	28	1.99
54362396--54362438	19	2.2	19	87	4	59	2	11	0	86	0.67
54367875--54367955	29	2.8	28	81	9	81	58	2	3	35	1.29
54368143--54368205	25	2.5	25	73	19	67	60	4	4	30	1.38
54369570--54369611	18	2.5	17	81	11	50	45	2	4	47	1.36
54371119--54371156	12	3.2	12	81	7	51	52	0	0	47	1.00
54374904--54375165	48	5.5	48	85	6	322	23	31	17	27	1.96
54374904--54375165	97	2.8	96	89	7	385	23	31	17	27	1.96
54374801--54375165	49	7.6	48	77	9	329	24	30	18	26	1.97
54378186--54378215	10	2.8	11	90	10	53	36	0	10	53	1.35
54382132--54382156	2	12.5	2	100	0	50	48	0	0	52	1.00
54384421--54384525	53	2.0	53	83	3	131	27	38	17	17	1.92
54388730--54388787	29	2.0	29	100	0	116	41	31	6	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54390712--54390754	16	2.6	16	79	17	52	37	9	9	44	1.69
54403866--54404022	41	3.8	40	70	12	113	24	18	26	31	1.98
54406446--54406503	19	3.1	18	79	15	73	39	8	10	41	1.70
54406898--54407031	31	4.4	32	76	12	129	38	14	23	23	1.92
54407667--54407796	66	2.0	66	83	6	165	13	25	17	43	1.86
54408244--54408633	194	2.0	194	97	0	744	38	17	10	33	1.84
54414549--54414601	23	2.4	22	76	20	56	9	18	1	69	1.25
54420186--54420225	21	1.9	21	89	0	62	50	10	12	27	1.72
54420902--54420949	25	1.9	25	91	0	78	35	18	29	16	1.93
54420970--54421020	21	2.4	21	96	0	93	45	1	33	19	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310