Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  96  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30869964--30870203
79
3.0
79
81
5
272
29
17
17
35
1.93
30870200--30870235
14
2.6
14
86
4
56
30
13
5
50
1.65
30869743--30870342
244
2.5
239
83
6
708
30
17
19
33
1.94
30871009--30871065
15
3.7
15
85
2
78
66
14
5
14
1.41
30871012--30871074
31
2.1
30
82
8
74
71
12
3
12
1.26
30871857--30871888
16
1.9
17
93
6
57
37
6
6
50
1.53
30872820--30872848
3
9.7
3
100
0
58
68
0
0
31
0.89
30872888--30872937
21
2.3
22
82
10
66
76
0
24
0
0.80
30873182--30873241
30
2.0
30
83
6
77
48
3
18
30
1.64
30873637--30873666
15
1.9
16
93
6
53
43
0
10
46
1.37
30874240--30874308
30
2.3
30
82
7
77
46
4
18
30
1.69
30877935--30877987
2
26.5
2
100
0
106
0
49
0
50
1.00
30880574--30880651
22
3.6
22
66
1
68
32
2
6
58
1.37
30912688--30912771
41
2.0
43
93
4
145
29
9
17
42
1.81
30914409--30914478
29
2.4
30
80
9
81
54
1
10
34
1.43
30917398--30917467
9
8.0
8
73
14
50
25
5
4
64
1.34
30917398--30917467
4
16.0
4
73
14
50
25
5
4
64
1.34
30922684--30922753
1
70.0
1
72
0
50
85
2
7
4
0.80
30922686--30922756
11
6.2
11
77
19
74
84
2
8
4
0.84
30922684--30922751
20
3.3
20
80
13
68
85
2
7
4
0.82
30922684--30922753
23
3.1
21
80
9
77
85
2
7
4
0.80
30922687--30922755
35
2.0
35
86
11
97
84
2
8
4
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30923680--30923782
45
2.3
45
77
1
109
28
12
26
33
1.93
30923743--30924115
143
2.6
142
81
5
389
27
19
24
28
1.98
30923891--30924255
96
3.9
96
81
9
389
29
18
24
28
1.98
30923986--30924307
96
3.3
96
82
5
269
29
17
24
29
1.97
30924616--30924671
24
2.3
25
79
14
64
53
26
5
14
1.62
30924988--30925025
18
2.2
18
90
4
60
5
13
2
78
1.02
30926038--30926107
9
8.0
8
73
14
50
25
5
4
64
1.34
30926038--30926107
4
16.0
4
73
14
50
25
5
4
64
1.34
30926230--30926280
20
2.5
20
90
3
75
23
5
5
64
1.38
30928511--30928535
13
1.9
13
100
0
50
40
8
4
48
1.51
30929927--30930004
17
5.1
17
69
23
73
56
19
10
14
1.66
30929939--30929990
13
3.7
13
74
18
50
57
17
9
15
1.64
30929927--30930004
30
2.6
30
97
0
147
56
19
10
14
1.66
30930459--30930534
38
2.0
38
94
0
134
19
28
9
42
1.82
30931507--30931573
32
2.1
32
86
5
91
26
16
13
43
1.85
30937774--30937840
33
2.1
32
83
10
84
35
0
4
59
1.18
30938637--30938683
25
2.0
25
83
8
62
27
14
4
53
1.60
30938954--30939116
46
3.7
46
78
14
173
21
23
13
41
1.89
30939034--30939106
38
1.9
38
97
0
137
23
24
17
34
1.96
30940162--30940258
11
8.8
11
84
0
113
3
10
34
52
1.51
30940162--30940242
22
3.7
22
93
0
135
1
9
38
50
1.44
30943843--30943872
15
1.9
15
93
6
51
50
3
0
46
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30943841--30943883
17
2.5
17
82
10
52
51
2
2
44
1.27
30947071--30947118
22
2.2
22
100
0
96
25
12
27
35
1.92
30954007--30954034
6
4.7
6
100
0
56
53
0
0
46
1.00
30955123--30955241
54
2.2
54
81
3
141
21
25
25
27
1.99
30956328--30956389
32
2.0
32
84
15
85
32
19
3
45
1.66
30961253--30961360
26
4.2
26
89
0
171
33
8
23
35
1.85
30963783--30963832
24
2.1
24
100
0
100
40
18
4
38
1.69
30964603--30964627
7
3.6
7
100
0
50
76
0
0
24
0.80
30973443--30973506
33
1.9
33
96
0
119
35
4
26
32
1.77
30984293--30984317
6
4.2
6
100
0
50
16
0
16
68
1.22
30987266--30987313
25
1.9
26
87
8
73
45
10
8
35
1.68
31002839--31002876
19
2.1
19
85
5
51
50
10
10
28
1.70
31005204--31005228
4
6.2
4
100
0
50
24
24
0
52
1.48
31006472--31006557
42
2.0
42
100
0
172
41
9
9
39
1.69
31008337--31009279
40
23.5
40
96
0
1654
27
27
22
23
1.99
31017210--31018152
40
23.5
40
96
0
1645
27
27
22
23
1.99
31023424--31023456
5
6.6
5
89
10
50
42
0
0
57
0.98
31025596--31025733
46
3.0
46
92
0
213
37
15
25
21
1.92
31025619--31025749
46
2.8
46
91
2
201
40
14
24
20
1.90
31027587--31027627
18
2.4
17
88
8
57
58
0
9
31
1.31
31028345--31028387
10
4.3
10
82
11
61
69
2
6
20
1.23
31028428--31028495
34
2.0
34
100
0
136
47
11
5
35
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31034029--31034078
20
2.5
20
80
6
57
68
2
4
26
1.18
31036193--31036261
21
3.4
21
71
15
72
36
1
7
55
1.37
31036248--31036278
15
2.1
14
94
5
53
35
3
6
54
1.42
31036654--31036684
12
2.6
12
94
0
53
74
0
25
0
0.82
31048930--31048971
22
1.9
22
90
0
66
7
33
26
33
1.83
31061619--31061888
135
2.0
135
97
0
513
34
14
22
28
1.93
31061821--31061988
46
3.6
46
77
12
155
30
17
27
24
1.97
31061908--31062019
46
2.5
46
90
8
169
29
15
30
25
1.95
31067172--31067219
19
2.4
21
79
6
55
66
12
0
20
1.24
31069054--31069111
30
1.9
30
89
0
89
55
1
0
43
1.10
31069046--31069127
40
2.0
40
83
4
103
53
1
1
43
1.16
31069094--31069150
30
1.9
29
82
3
69
57
1
1
38
1.19
31069094--31069141
20
2.4
20
75
0
51
56
2
2
39
1.23
31070525--31070583
19
3.0
19
76
16
66
33
5
0
61
1.18
31073639--31073666
4
7.0
4
100
0
56
50
0
0
50
1.00
31077157--31077196
3
13.3
3
84
10
55
37
0
0
62
0.95
31077523--31077573
18
2.9
18
75
13
52
72
5
9
11
1.27
31079084--31079159
21
3.5
23
77
15
81
15
21
22
40
1.90
31081462--31081506
22
2.0
23
87
8
67
17
15
2
64
1.39
31081467--31081506
11
3.5
11
86
3
53
15
17
2
65
1.39
31089218--31089280
28
2.2
29
82
5
74
28
9
4
57
1.51
31089294--31089511
104
2.1
102
79
8
235
36
8
6
48
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31089320--31089513
104
1.9
100
83
5
246
34
8
6
50
1.60
31091991--31092031
14
2.8
15
78
14
50
14
39
0
46
1.45
31099516--31099549
17
2.0
17
88
0
50
47
0
14
38
1.45
31105862--31105903
22
1.9
22
85
9
59
69
9
7
14
1.37
31106631--31106687
23
2.6
23
86
10
75
40
8
5
45
1.58
31107091--31107151
30
2.2
29
82
11
74
32
0
1
65
1.02
31107452--31107502
17
3.0
17
80
11
59
66
0
33
0
0.92
31107452--31107495
14
3.0
15
83
12
56
63
0
36
0
0.95
31107802--31107846
24
1.9
24
90
4
74
73
2
0
24
0.95
31107843--31107962
30
4.1
29
77
7
109
30
24
3
41
1.71
31109488--31109580
45
2.1
45
93
0
159
51
17
8
22
1.72
31112966--31112993
4
7.0
4
100
0
56
25
25
0
50
1.50
31121403--31121432
14
2.1
14
93
0
51
23
6
3
66
1.30
31121356--31121909
172
3.3
173
82
9
599
28
16
19
35
1.93
31121347--31121833
259
1.9
252
85
4
672
28
15
19
36
1.93
31121347--31121909
87
6.7
87
79
10
563
29
15
19
35
1.93
31121675--31121954
75
3.7
74
76
7
289
31
16
17
35
1.92
31121675--31121990
75
4.2
79
76
11
202
29
17
17
35
1.93
31122185--31122304
30
4.1
30
74
7
104
32
22
2
42
1.67
31122527--31122569
15
2.8
16
82
3
61
65
13
6
13
1.46
31123323--31123383
17
3.8
17
76
20
60
34
8
3
54
1.47
31125368--31125397
15
2.0
15
93
0
51
63
0
6
30
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31125489--31125519
15
2.1
15
100
0
62
61
0
6
32
1.21
31125783--31125813
15
2.1
15
100
0
62
61
0
6
32
1.21
31125315--31125901
294
2.0
294
98
0
1129
57
3
12
26
1.51
31125929--31125957
6
4.8
6
100
0
58
82
0
0
17
0.66
31125881--31125978
33
3.0
33
74
4
83
63
1
8
27
1.29
31126129--31126250
3
40.7
3
72
9
88
59
2
8
29
1.39
31126134--31126173
20
2.0
21
85
5
55
57
2
12
27
1.48
31126205--31126266
12
5.2
12
79
14
58
64
1
3
30
1.19
31126725--31126773
10
4.7
10
81
18
64
77
2
10
10
1.07
31128075--31128212
40
3.5
40
79
3
143
36
20
19
23
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310