genome.fa.s13.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  174  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56847699--56847723	5	5.0	5	100	0	50	60	0	0	40	0.97
56855484--56855620	40	3.5	38	78	8	141	38	18	20	21	1.93
56855653--56855809	41	3.9	41	94	0	262	19	22	30	28	1.98
56856131--56856246	21	5.5	21	71	11	76	23	0	31	43	1.60
56856130--56856312	7	26.0	7	68	9	68	21	0	36	40	1.58
56856159--56856227	28	2.4	29	82	2	95	18	1	33	46	1.58
56856419--56856460	16	2.5	17	92	7	68	54	0	0	45	0.99
56861875--56861955	36	2.3	36	97	2	155	24	13	13	48	1.79
56862266--56862531	43	6.2	42	87	3	237	27	17	28	26	1.98
56862266--56862531	86	3.1	85	89	1	388	27	17	28	26	1.98
56866734--56866764	16	1.9	16	93	0	53	51	6	9	32	1.60
56868371--56868428	26	2.3	25	82	11	66	58	3	3	34	1.32
56868725--56868803	6	13.3	6	90	6	99	69	0	5	25	1.08
56868725--56868803	9	8.9	9	86	4	99	69	0	5	25	1.08
56870698--56870765	9	7.3	9	74	12	57	14	5	0	79	0.91
56874088--56874113	3	8.7	3	100	0	52	30	0	34	34	1.58
56880699--56880724	6	4.3	6	100	0	52	0	69	15	15	1.20
56883746--56883778	17	1.9	18	88	11	52	42	12	0	45	1.41
56883926--56884240	113	2.8	114	83	2	359	27	23	20	28	1.99
56884295--56885072	266	3.0	253	88	8	1119	31	19	19	29	1.96
56884699--56884874	77	2.3	76	78	8	196	32	18	19	29	1.96
56884990--56885155	84	2.0	84	80	2	190	35	20	17	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56885651--56885700	15	3.4	14	77	5	55	32	2	26	40	1.67
56885651--56885707	22	2.6	21	86	5	60	33	1	26	38	1.67
56885621--56885703	29	2.9	30	80	7	100	30	2	30	37	1.70
56885658--56885706	15	3.3	15	74	8	55	32	2	26	38	1.68
56885667--56885719	22	2.5	22	96	3	99	32	3	26	37	1.74
56886221--56886998	266	3.0	253	88	8	1128	31	19	19	29	1.96
56886625--56886800	77	2.3	76	78	8	196	32	18	19	29	1.96
56886916--56887081	84	2.0	84	80	2	190	35	20	17	26	1.95
56887577--56887626	15	3.4	14	77	5	55	32	2	26	40	1.67
56887577--56887633	22	2.6	21	86	5	60	33	1	26	38	1.67
56887547--56887629	29	2.9	30	80	7	100	30	2	30	37	1.70
56887584--56887632	15	3.3	15	74	8	55	32	2	26	38	1.68
56887593--56887645	22	2.5	22	96	3	99	32	3	26	37	1.74
56888676--56888727	20	2.5	21	78	12	54	28	7	17	46	1.75
56889074--56889106	15	2.2	15	94	0	57	39	3	3	54	1.31
56889280--56889334	24	2.2	26	83	6	69	58	18	1	21	1.49
56889424--56889674	9	29.8	9	74	12	194	47	19	2	29	1.64
56889420--56889681	25	10.5	24	82	4	177	48	19	2	29	1.62
56889424--56889613	41	4.8	41	76	17	186	48	18	2	30	1.61
56889465--56889676	50	4.2	49	86	3	237	46	20	2	30	1.65
56895136--56895204	21	3.3	21	83	0	84	34	20	42	2	1.67
56895189--56895215	12	2.2	12	100	0	54	40	18	40	0	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56895648--56895753	42	2.5	44	90	4	164	32	24	19	23	1.98
56895651--56895835	43	4.3	43	79	11	143	28	21	22	28	1.99
56905324--56905949	312	2.0	303	80	7	681	44	11	11	33	1.76
56906670--56906722	3	17.7	3	100	0	106	66	0	0	33	0.92
56923386--56923422	12	3.0	13	76	15	51	56	0	0	43	0.99
56924499--56924531	15	2.1	16	88	5	50	27	6	0	66	1.15
56924664--56924696	14	2.2	16	89	10	52	33	9	0	57	1.30
56925669--56925693	12	2.1	12	100	0	50	28	0	48	24	1.52
56928103--56928144	18	2.3	18	84	11	59	61	0	2	35	1.09
56928280--56928318	18	2.3	18	86	8	55	35	20	0	43	1.52
56932968--56932994	14	1.9	14	100	0	54	22	18	7	51	1.70
56934283--56935264	492	2.0	492	97	0	1874	25	10	28	35	1.90
56936290--56936418	27	4.8	27	89	4	190	32	15	13	37	1.87
56939397--56939429	10	3.7	9	88	12	50	63	0	0	36	0.95
56939528--56939592	11	5.6	11	77	14	53	52	1	1	44	1.19
56941241--56941296	27	2.0	29	86	6	80	39	7	5	48	1.54
56943659--56943696	18	2.1	19	95	5	69	44	0	5	50	1.24
56947003--56947119	12	9.2	12	69	17	58	50	8	14	26	1.71
56947005--56947069	25	2.7	24	83	7	69	43	10	15	30	1.81
56947063--56947126	13	4.7	13	77	9	65	54	7	12	25	1.64
56947114--56947151	18	2.1	18	85	9	51	60	7	15	15	1.57
56955377--56955659	142	2.0	142	97	0	530	27	19	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56958501--56958586	43	2.1	41	82	10	104	58	3	1	37	1.23
56958783--56958839	30	1.9	29	89	3	87	36	3	1	57	1.26
56958781--56958838	14	4.1	14	72	10	55	37	3	1	56	1.26
56971161--56971209	21	2.2	23	82	7	57	57	0	2	40	1.10
56982711--56982960	83	3.0	83	94	0	428	46	10	17	26	1.79
56998815--56998844	15	2.0	15	100	0	60	40	13	20	26	1.89
57003172--57003202	6	5.2	6	92	0	53	54	0	45	0	0.99
57003186--57003248	10	6.2	10	73	8	56	65	0	33	1	1.03
57003187--57003234	21	2.3	21	89	3	71	66	0	31	2	1.03
57017160--57017189	15	2.0	15	100	0	60	53	13	6	26	1.64
57017212--57017264	16	3.2	16	94	5	97	24	0	37	37	1.56
57017245--57017335	45	2.0	45	85	2	121	27	6	28	37	1.82
57017500--57017534	18	2.0	17	88	5	52	54	0	0	45	0.99
57017483--57017807	120	2.7	121	94	0	573	48	5	2	43	1.39
57017599--57017650	15	3.6	15	80	12	56	53	1	0	44	1.11
57017483--57017774	59	4.9	58	67	16	168	50	5	2	42	1.36
57023515--57023569	27	2.0	27	82	6	67	36	12	1	49	1.52
57023846--57023887	20	2.1	20	100	0	84	57	9	9	23	1.60
57026420--57026481	24	2.6	24	81	0	70	24	17	16	41	1.89
57026440--57026486	24	2.0	24	86	0	67	23	19	17	40	1.91
57028404--57028469	33	2.0	33	87	0	96	31	1	7	59	1.35
57031059--57031255	72	2.7	71	79	6	182	28	17	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57038949--57039020	35	2.1	35	94	0	126	29	19	34	16	1.94
57039321--57039388	30	2.3	30	94	0	118	26	26	20	26	1.99
57048056--57048384	44	7.6	44	72	12	157	31	20	20	26	1.98
57048100--57048393	44	6.9	41	72	12	193	30	20	22	26	1.98
57048275--57048436	87	1.9	87	83	5	211	29	21	24	24	1.99
57048099--57048540	218	2.0	213	79	6	462	31	19	22	26	1.98
57050179--57050267	47	1.9	46	90	2	142	33	7	19	39	1.80
57050694--57050875	46	4.0	46	91	1	258	39	14	23	23	1.91
57054499--57054735	128	1.8	129	90	0	386	29	16	18	35	1.93
57057188--57057334	43	3.4	43	75	4	127	34	17	22	25	1.95
57058517--57058596	39	2.1	39	92	0	133	28	20	6	45	1.75
57065585--57065639	25	2.2	24	81	12	67	52	0	5	41	1.24
57065502--57065664	33	4.9	32	73	16	111	51	2	6	39	1.40
57065559--57065664	33	3.2	34	81	11	114	51	1	5	40	1.36
57068407--57068452	18	2.6	18	96	0	83	26	28	4	41	1.74
57070762--57070835	32	2.3	32	81	4	87	58	0	5	36	1.21
57070849--57070935	24	3.7	24	74	18	83	55	4	10	29	1.54
57071988--57072029	21	2.0	22	85	4	59	78	4	16	0	0.91
57072678--57073485	44	17.9	44	73	11	528	28	20	19	31	1.97
57072641--57073292	89	7.3	88	73	9	307	29	21	18	30	1.97
57072716--57073480	89	8.5	89	75	11	601	28	21	18	31	1.97
57072631--57073296	133	4.9	133	73	11	406	29	21	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57073131--57073679	227	2.3	229	83	7	635	28	20	19	32	1.96
57073433--57073530	51	1.9	51	85	4	135	25	21	21	31	1.98
57079019--57079101	32	2.6	32	86	1	105	57	0	4	37	1.20
57079143--57079198	24	2.3	24	84	6	69	53	3	8	33	1.49
57082889--57082928	18	2.2	19	86	8	57	15	45	25	15	1.84
57084587--57084665	39	2.0	39	97	0	149	44	15	16	24	1.86
57085183--57085259	41	1.9	40	84	7	102	50	2	3	42	1.34
57085242--57085274	5	6.8	5	96	3	59	42	0	0	57	0.98
57094061--57094088	5	5.6	5	100	0	56	21	0	60	17	1.36
57094600--57094646	22	2.3	20	75	10	51	59	2	2	36	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310