genome.fa.s13.2.7.7.80.10.50.1000.241.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  241  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79383103--79383133	16	1.9	16	93	0	53	41	0	22	35	1.54
79387313--79387366	26	2.0	27	82	10	67	46	11	11	31	1.74
79390230--79390421	53	3.7	53	80	7	198	36	17	24	21	1.95
79390230--79390429	49	3.9	50	81	7	163	36	17	25	21	1.94
79390621--79390650	15	1.9	16	93	6	53	40	0	23	36	1.55
79403902--79403986	43	2.0	43	92	0	143	21	18	34	25	1.96
79409332--79409366	12	2.8	13	91	4	54	40	0	60	0	0.97
79409329--79409364	18	2.0	18	94	0	63	41	0	58	0	0.98
79410741--79410773	13	2.5	13	100	0	66	27	21	27	24	1.99
79412487--79412536	11	4.5	11	78	14	57	34	0	4	62	1.14
79414208--79414320	33	3.5	32	81	7	131	37	13	23	25	1.91
79414313--79414428	31	3.7	31	85	8	173	26	18	28	26	1.98
79414308--79414462	62	2.5	64	84	7	201	29	16	27	26	1.97
79414519--79414583	27	2.4	27	92	0	103	38	13	26	21	1.91
79435755--79435780	9	2.9	9	100	0	52	23	0	0	76	0.78
79441821--79441904	41	2.0	41	95	0	150	34	11	23	29	1.91
79447520--79447773	45	5.6	45	75	7	156	34	17	18	28	1.94
79447652--79447841	49	4.0	48	80	6	233	37	17	16	28	1.91
79447611--79447835	94	2.4	94	87	0	315	35	16	18	29	1.93
79447818--79447918	43	2.3	43	88	5	141	32	14	24	27	1.95
79454461--79454643	51	3.6	50	79	7	199	28	30	13	27	1.94
79454464--79454638	52	3.5	50	83	10	205	28	30	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79462373--79462540	49	3.4	49	81	6	205	28	25	19	26	1.99
79462367--79462549	100	1.8	100	89	4	289	28	25	19	25	1.99
79462644--79462766	49	2.5	49	82	2	156	29	28	17	24	1.98
79462429--79462858	215	2.0	215	95	0	772	29	25	15	29	1.96
79472676--79472732	29	2.0	29	85	0	78	28	12	29	29	1.93
79472722--79472819	29	3.4	29	84	9	121	29	15	31	23	1.95
79475698--79475729	16	2.0	16	93	0	55	50	28	6	15	1.68
79476966--79477010	16	2.8	16	82	0	63	48	17	24	8	1.75
79477260--79477338	29	2.7	29	75	7	97	25	11	32	30	1.91
79479399--79479472	37	2.0	37	91	0	121	28	32	18	20	1.96
79479482--79479656	91	1.9	90	90	1	278	32	20	8	39	1.81
79479847--79480036	47	4.0	47	90	0	281	25	28	12	34	1.92
79479893--79479968	22	3.3	22	65	28	59	25	31	13	30	1.93
79486305--79486343	19	2.1	19	85	9	53	41	20	7	30	1.80
79497153--79497292	50	2.8	50	77	10	117	19	23	17	39	1.92
79497314--79497359	24	2.0	24	91	4	76	13	15	28	43	1.83
79509686--79509753	28	2.4	28	95	0	127	19	36	22	22	1.95
79515511--79515724	41	5.2	41	85	0	259	21	26	14	36	1.93
79517018--79517378	46	7.6	50	74	14	229	24	29	19	26	1.98
79517013--79517381	94	3.9	93	76	11	326	24	29	19	26	1.99
79517600--79518056	76	6.0	76	99	0	905	28	19	9	42	1.83
79524784--79524915	47	2.8	47	83	4	158	22	31	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79524972--79525080	46	2.3	47	82	4	132	23	29	17	29	1.97
79526768--79526815	24	1.9	26	87	8	73	37	0	22	39	1.55
79527862--79527984	62	2.0	62	98	0	237	39	7	21	31	1.80
79533256--79533386	49	2.7	49	89	0	181	27	16	28	27	1.97
79533271--79533438	49	3.5	48	82	2	165	28	16	27	27	1.97
79533630--79533655	13	2.0	13	100	0	52	30	7	23	38	1.83
79537296--79537365	25	2.8	25	95	0	122	24	24	25	25	2.00
79537567--79537781	27	9.0	27	69	23	126	24	23	19	32	1.97
79537656--79537709	18	3.0	18	88	0	81	24	24	18	33	1.97
79537621--79537753	63	2.1	64	92	1	223	24	24	19	32	1.98
79537674--79537780	45	2.4	45	95	0	187	25	24	19	30	1.98
79537715--79537753	18	2.2	18	100	0	78	23	25	20	30	1.98
79537776--79537939	27	6.1	27	79	3	152	31	8	19	40	1.81
79537771--79537924	54	2.9	54	84	2	177	29	9	20	40	1.83
79537774--79537925	81	1.9	80	86	1	214	29	8	20	41	1.82
79537918--79538046	27	4.8	27	87	3	172	39	10	21	27	1.87
79537918--79538046	53	2.4	54	82	7	172	39	10	21	27	1.87
79539617--79539653	20	1.9	20	88	5	58	48	10	8	32	1.67
79549565--79549618	24	2.3	24	84	9	67	24	22	18	35	1.96
79550809--79550846	12	3.1	13	85	11	53	28	36	26	7	1.84
79553352--79553422	34	2.1	34	91	0	115	35	11	22	30	1.89
79555916--79555976	30	2.0	30	83	0	77	42	3	24	29	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79559938--79560016	26	3.1	26	78	10	83	29	21	24	25	1.99
79563685--79563889	48	4.4	48	75	8	206	27	22	21	27	1.99
79575957--79576082	55	2.2	56	88	2	182	26	12	28	32	1.93
79575957--79576082	28	4.5	28	90	2	182	26	12	28	32	1.93
79575985--79576095	28	4.0	27	90	3	116	28	11	26	33	1.91
79580390--79580474	40	2.2	39	85	4	116	23	28	23	24	2.00
79580413--79580520	39	2.7	40	85	2	137	23	25	25	26	2.00
79581822--79581858	19	1.9	19	94	0	65	51	13	16	18	1.76
79582393--79582455	24	2.6	24	79	2	72	30	17	23	28	1.97
79582393--79582470	25	3.2	25	79	3	95	30	16	24	28	1.97
79585586--79585636	25	2.0	25	88	7	77	31	21	17	29	1.96
79585680--79585714	10	3.4	10	92	7	61	34	17	17	31	1.93
79585675--79585714	21	1.9	21	94	0	71	37	17	15	30	1.90
79585674--79585726	21	2.5	20	84	3	70	37	16	13	32	1.88
79585760--79585829	25	2.8	25	91	0	104	24	24	22	28	1.99
79586050--79586131	29	2.7	30	83	14	107	29	19	25	25	1.99
79586271--79586338	34	2.0	34	97	0	127	17	17	42	22	1.89
79591136--79591212	38	2.1	37	85	4	109	37	18	22	20	1.93
79592016--79592072	30	1.9	30	88	0	87	29	7	14	49	1.69
79595538--79595601	32	2.0	32	96	0	119	26	17	31	25	1.97
79598965--79599253	147	2.0	147	84	1	382	25	21	16	37	1.93
79607096--79607244	40	3.7	40	88	5	169	25	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79607973--79608454	246	2.0	247	99	0	957	40	11	18	30	1.85
79608989--79609052	32	2.0	32	93	0	110	29	14	20	35	1.92
79631610--79631735	29	4.4	28	75	9	130	27	15	30	26	1.95
79643643--79643667	13	1.9	13	100	0	50	24	12	8	56	1.62
79657019--79657130	43	2.6	43	81	6	147	28	22	19	29	1.98
79665213--79665272	29	2.1	29	100	0	120	45	21	10	23	1.82
79667484--79667632	43	3.5	43	75	7	144	26	16	26	30	1.97
79667510--79667632	41	2.9	43	78	7	126	27	16	26	30	1.97
79667825--79669784	978	2.0	978	99	0	3895	32	8	19	40	1.81
79675696--79675782	34	2.6	34	81	7	88	25	26	22	25	2.00
79689601--79689658	32	1.9	30	82	10	73	51	3	18	25	1.62
79699975--79700096	46	2.6	47	84	5	147	26	22	14	36	1.93
79700431--79700492	30	2.1	30	84	6	81	29	24	6	40	1.80
79702047--79703820	597	3.0	597	93	0	3102	38	22	12	25	1.90
79711048--79711271	104	2.2	104	91	1	360	18	19	30	31	1.95
79711190--79711341	71	2.1	72	92	1	252	23	17	29	30	1.97
79734229--79734308	29	2.8	28	87	7	117	27	35	15	22	1.94
79734229--79734308	28	2.8	28	87	7	117	27	35	15	22	1.94
79734527--79734569	16	2.7	16	88	0	68	6	20	18	53	1.67
79747368--79747489	47	2.6	47	93	0	199	36	13	26	24	1.92
79747468--79747675	53	3.9	53	79	5	247	33	16	25	24	1.96
79765085--79765152	34	2.0	34	100	0	136	35	5	26	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79765900--79765939	20	2.0	20	100	0	80	30	0	20	50	1.49
79768771--79768842	34	2.2	33	87	2	99	31	23	19	25	1.98
79782530--79782754	40	5.6	40	85	2	290	23	27	24	25	2.00
79782494--79782754	80	3.3	80	83	3	312	23	26	24	25	2.00
79795169--79795293	55	2.3	55	84	2	153	24	31	28	15	1.95
79815439--79815481	19	2.3	19	95	0	77	9	23	41	25	1.84
79820478--79820521	23	1.9	23	90	0	70	29	13	22	34	1.93
79840894--79840986	40	2.3	40	85	7	118	27	30	15	26	1.96
79844383--79844535	39	3.9	39	92	0	216	28	28	19	24	1.99
79844355--79844527	78	2.2	78	83	2	213	28	28	19	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310