genome.fa.s13.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  150  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49097179--49097244	29	2.3	29	83	0	87	22	22	18	36	1.95
49097221--49097378	29	5.4	29	73	8	115	29	25	10	35	1.88
49097192--49097392	87	2.3	87	84	3	269	26	24	12	35	1.91
49100162--49100204	21	2.0	21	95	0	77	25	16	13	44	1.85
49101547--49101598	27	2.0	26	84	3	68	34	21	26	17	1.95
49115869--49115937	29	2.4	29	95	0	120	18	28	11	40	1.86
49115857--49115997	29	4.9	29	79	3	113	25	24	12	36	1.91
49116905--49116931	14	1.9	14	100	0	54	37	14	11	37	1.82
49121732--49121782	26	2.0	26	84	7	68	33	19	17	29	1.95
49129140--49129204	34	1.9	34	84	6	87	24	23	23	29	1.99
49131863--49131942	28	2.8	28	83	7	99	28	33	15	22	1.94
49132008--49132042	17	2.0	18	88	5	54	20	34	22	22	1.97
49132162--49132212	16	3.2	16	82	0	66	7	21	23	47	1.77
49140868--49141052	79	2.3	82	84	7	238	25	27	22	24	2.00
49140849--49141052	40	5.1	40	82	8	238	25	27	22	25	2.00
49157850--49157890	21	2.0	21	85	4	57	48	26	0	24	1.51
49161019--49161083	32	2.0	32	96	0	121	30	9	15	44	1.78
49164989--49165277	157	1.8	157	87	1	436	37	19	11	31	1.88
49171037--49171068	16	2.0	16	93	0	55	50	21	6	21	1.71
49172426--49172533	29	3.8	29	85	6	148	27	16	27	27	1.97
49173603--49173636	18	1.9	18	88	5	52	41	20	8	29	1.82
49175424--49175480	8	7.1	8	79	0	69	54	28	3	14	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49175424--49175489	16	4.1	16	90	0	96	51	28	4	15	1.63
49176847--49176954	29	3.8	29	85	6	148	27	16	27	27	1.97
49191285--49191357	27	2.7	27	76	0	74	30	20	15	34	1.93
49191638--49191684	14	3.2	14	81	6	58	42	25	6	25	1.78
49194907--49195005	34	2.9	34	80	7	103	28	22	21	28	1.99
49198819--49199138	46	7.0	46	93	0	514	23	25	15	36	1.93
49202734--49202801	29	2.3	30	87	5	93	29	17	5	47	1.71
49207194--49207247	26	2.1	26	82	0	63	35	25	24	14	1.94
49207302--49207371	32	2.2	32	81	0	77	31	20	24	24	1.98
49207421--49207529	43	2.5	43	83	0	137	28	31	20	20	1.97
49207826--49207931	27	4.0	27	79	7	108	31	11	19	37	1.87
49214142--49214194	22	2.5	20	74	11	52	73	9	5	11	1.24
49215005--49215052	19	2.4	21	86	6	64	66	6	4	22	1.32
49215091--49215134	18	2.4	19	81	14	56	68	0	4	27	1.09
49224573--49224780	67	3.2	64	78	10	206	31	17	29	22	1.96
49231668--49231934	38	6.3	38	69	21	156	29	16	24	29	1.96
49231702--49231913	47	4.7	47	79	10	244	30	16	23	30	1.96
49231745--49231934	85	2.2	85	95	0	344	30	16	23	29	1.96
49232493--49232596	52	2.0	52	96	0	190	26	11	22	39	1.88
49234389--49234430	15	2.8	15	88	0	66	16	16	14	52	1.75
49236922--49237249	38	7.9	38	71	17	224	30	15	24	29	1.96
49236948--49237041	48	2.0	48	91	0	152	34	15	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49236922--49237242	85	3.8	85	88	0	471	30	15	24	29	1.96
49240969--49241105	46	3.0	46	70	16	138	22	18	29	29	1.97
49249483--49249523	21	2.0	21	90	4	66	58	0	7	34	1.26
49249985--49250022	20	2.0	20	89	5	60	42	5	10	42	1.62
49258365--49258389	13	1.9	13	100	0	50	28	0	0	72	0.86
49259465--49259677	45	4.7	45	99	0	417	27	28	24	20	1.99
49261153--49261202	17	2.9	17	72	0	55	22	18	20	40	1.92
49262793--49262872	27	3.0	27	86	0	115	22	21	13	42	1.88
49262796--49262887	27	3.4	27	83	0	112	20	20	13	45	1.84
49262793--49262904	54	2.1	54	81	0	125	21	20	14	43	1.87
49262937--49263006	27	2.6	27	79	2	79	24	28	7	40	1.81
49265717--49265751	17	2.0	18	94	5	63	54	0	5	40	1.24
49265903--49266051	7	21.9	7	64	21	50	57	0	4	38	1.23
49265953--49265997	21	2.1	21	84	8	56	60	0	4	35	1.17
49266334--49266428	35	2.5	37	83	13	113	38	14	8	37	1.77
49266357--49266419	18	3.5	17	89	4	90	36	12	11	39	1.79
49275315--49275402	44	2.0	44	86	0	122	32	29	18	19	1.95
49294517--49294602	44	2.0	44	86	4	120	31	31	17	19	1.95
49296092--49296333	49	4.9	50	79	3	220	29	25	19	26	1.98
49303121--49303295	49	3.5	49	85	6	244	29	25	18	26	1.98
49303108--49303302	49	3.9	49	83	5	239	29	25	18	26	1.98
49303114--49303296	100	1.8	100	95	0	330	29	25	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49307659--49307696	14	2.9	13	81	11	51	57	10	13	18	1.63
49307692--49307730	20	2.0	20	84	0	51	53	10	5	30	1.56
49316417--49316481	31	2.1	31	97	0	121	24	20	18	36	1.94
49325435--49325696	39	6.7	40	87	7	337	25	22	27	24	2.00
49328710--49328813	42	2.5	42	93	0	172	29	16	25	28	1.97
49328710--49328835	42	3.0	42	88	5	159	30	15	24	29	1.96
49329722--49329778	24	2.5	21	76	17	60	24	3	26	45	1.69
49336032--49336109	29	2.7	28	84	11	104	25	14	30	29	1.94
49336062--49336389	174	1.9	174	96	0	602	30	14	24	31	1.94
49338855--49338900	21	2.1	22	84	11	60	21	15	0	63	1.31
49345578--49345644	30	2.2	30	86	5	91	32	11	1	53	1.47
49347334--49347452	61	1.9	62	83	8	154	33	8	6	51	1.58
49353990--49354127	43	3.2	43	76	6	127	34	22	15	27	1.94
49362797--49362930	43	3.1	43	80	10	150	33	26	14	25	1.95
49372432--49372480	25	2.0	25	83	0	62	36	6	14	42	1.70
49372703--49372799	40	2.4	40	94	0	167	23	18	24	32	1.97
49373229--49373584	171	2.1	171	97	0	667	18	30	23	28	1.98
49378352--49378779	40	10.7	40	98	0	829	22	27	20	29	1.98
49391811--49391928	46	2.6	44	84	8	148	22	27	21	28	1.99
49391860--49392030	94	1.8	92	82	5	218	23	28	19	28	1.98
49407795--49407924	27	4.8	27	79	1	127	38	17	16	27	1.91
49407788--49407924	54	2.5	54	77	4	143	38	18	16	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49410655--49410776	46	2.7	46	82	10	151	30	19	27	22	1.98
49410653--49411008	49	7.5	49	72	10	190	28	19	28	23	1.98
49410703--49411008	142	2.2	145	80	9	346	27	19	28	24	1.99
49412351--49412432	42	2.0	42	85	0	110	28	14	21	35	1.93
49421279--49421358	42	1.9	42	81	0	97	30	17	20	32	1.95
49441794--49441826	16	2.0	17	88	5	50	45	0	3	51	1.16
49457633--49457773	43	3.5	43	69	16	138	39	24	17	18	1.91
49457674--49457794	34	3.3	34	67	18	98	35	26	19	18	1.95
49457633--49457810	77	2.3	77	95	0	311	36	24	19	19	1.95
49458088--49458355	122	2.2	122	99	0	527	35	22	21	20	1.96
49466177--49466439	40	6.4	40	81	11	320	22	23	28	25	1.99
49466181--49466418	83	2.9	83	95	1	415	22	22	29	25	1.99
49466177--49466439	123	2.1	121	82	11	322	22	23	28	25	1.99
49468871--49469056	48	3.9	48	87	2	250	25	17	30	27	1.97
49475843--49475881	15	2.6	15	100	0	78	15	30	38	15	1.88
49476231--49476276	22	2.2	22	84	7	60	19	41	19	19	1.91
49485812--49485926	43	2.7	43	82	5	126	33	26	13	26	1.93
49489000--49489183	48	3.8	48	85	0	251	27	31	17	23	1.97
49490700--49490759	28	2.2	26	77	11	66	26	26	11	35	1.91
49490714--49490785	28	2.6	28	88	0	99	29	27	12	30	1.93
49493661--49493968	141	2.2	141	90	1	474	36	17	11	34	1.85
49497718--49497765	21	2.3	22	82	10	64	72	6	8	12	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49497844--49497902	31	1.9	30	86	3	82	27	16	5	50	1.66
49504908--49504945	20	1.9	20	89	10	60	65	7	2	23	1.32
49517948--49518059	40	2.8	40	84	0	143	24	22	25	27	2.00
49526097--49526277	40	4.6	40	84	2	222	24	21	26	27	1.99
49529987--49530087	50	2.0	51	92	1	168	40	23	17	17	1.91
49537649--49537678	13	2.3	13	100	0	60	40	16	6	36	1.75
49537753--49537855	50	2.1	50	96	0	188	35	18	7	37	1.80
49546176--49546323	24	6.0	24	72	7	82	33	31	11	23	1.90
49547664--49547772	54	2.0	54	98	0	209	35	14	11	37	1.83
49547717--49547741	11	2.3	11	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310