genome.fa.s13.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  190  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61962277--61962306	3	10.0	3	100	0	60	66	0	33	0	0.92
61963633--61963675	16	2.7	16	79	13	52	51	18	13	16	1.77
61970443--61970475	15	2.1	17	88	11	52	63	3	0	33	1.10
61971898--61971936	20	1.9	21	85	15	55	43	12	0	43	1.42
61972283--61972320	16	2.3	17	90	4	60	76	2	5	15	1.08
61976564--61976708	44	3.3	44	71	18	156	62	3	4	30	1.31
61976466--61976936	88	5.2	88	85	10	657	59	3	3	33	1.31
61976729--61976770	12	3.7	12	78	12	52	50	0	0	50	1.00
61976762--61976896	42	3.3	42	67	21	124	62	2	4	30	1.30
61976619--61977036	188	2.2	188	100	0	836	58	2	4	34	1.31
61976707--61977004	100	2.9	98	80	14	259	59	2	4	33	1.29
61976917--61976958	12	3.7	12	78	12	52	50	0	0	50	1.00
61976526--61977038	88	5.5	90	81	12	460	59	2	4	33	1.31
61977031--61977067	19	1.9	19	89	10	58	64	10	2	21	1.37
61978380--61978414	16	2.4	14	90	9	52	74	0	22	2	0.95
61983942--61983967	8	3.2	8	100	0	52	42	34	0	23	1.54
61984473--61984560	38	2.3	39	82	9	101	40	12	13	32	1.82
61989691--61989827	2	68.5	2	100	0	274	50	0	49	0	1.00
61997490--61997518	15	1.9	15	100	0	58	44	0	0	55	0.99
62028597--62028663	32	2.1	31	97	2	125	35	20	8	34	1.84
62032006--62032052	3	15.7	3	100	0	94	34	0	31	34	1.58
62033690--62034026	44	7.6	44	80	2	327	27	18	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62033747--62034026	89	3.2	88	84	3	346	27	17	20	35	1.94
62033694--62034026	133	2.5	133	82	1	391	27	18	19	34	1.95
62045858--62045895	20	2.0	20	89	5	60	50	5	10	34	1.59
62046226--62046273	25	1.9	25	83	8	62	52	2	6	39	1.39
62047626--62047753	18	7.1	18	76	3	96	32	13	17	36	1.88
62050964--62050997	15	2.3	15	94	0	59	20	20	35	23	1.96
62051873--62051919	24	2.0	24	95	0	85	59	2	17	21	1.47
62065565--62065607	3	15.0	3	80	9	54	65	0	4	30	1.13
62065556--62065602	9	5.3	9	82	10	53	59	0	6	34	1.23
62065567--62065605	20	2.0	20	94	0	69	64	0	5	30	1.15
62065566--62065599	17	2.0	17	88	0	50	64	0	5	29	1.17
62067748--62067777	14	2.1	15	93	6	53	20	10	13	56	1.65
62074612--62074753	42	3.4	42	82	0	185	28	21	15	35	1.94
62076211--62076310	40	2.5	39	82	6	112	22	26	22	30	1.99
62079946--62080000	27	2.0	27	85	3	74	52	5	0	41	1.24
62084444--62084712	129	2.1	126	89	6	427	33	8	15	42	1.78
62084743--62085554	5	162.4	5	100	0	1624	39	0	20	40	1.52
62088696--62088731	18	2.0	18	94	0	63	33	19	22	25	1.97
62103762--62103822	28	2.2	28	93	0	104	39	3	27	29	1.72
62106839--62106867	3	9.7	3	100	0	58	65	0	0	34	0.93
62107275--62107325	17	3.1	17	80	11	61	62	0	3	33	1.13
62107319--62107370	27	1.9	27	88	7	79	44	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62107402--62107466	9	7.0	9	79	6	58	64	0	1	33	1.03
62107402--62107466	19	3.5	18	77	6	67	64	0	1	33	1.03
62107533--62107565	17	1.9	17	93	0	57	51	3	0	45	1.16
62121245--62121332	44	2.0	44	86	0	122	35	19	17	28	1.94
62122354--62122419	23	2.8	24	71	15	64	56	1	3	39	1.24
62122630--62122687	29	2.0	29	100	0	116	31	0	20	48	1.50
62125211--62125245	13	2.8	12	86	4	52	71	0	25	2	1.00
62129081--62129115	13	2.7	13	90	0	52	34	11	14	40	1.82
62130207--62130276	24	3.0	24	87	2	97	40	17	21	21	1.92
62130313--62130511	51	3.9	51	94	0	344	32	13	24	29	1.93
62134440--62134612	46	3.7	47	78	9	194	27	20	29	23	1.99
62135698--62135756	21	2.9	21	84	2	75	16	32	25	25	1.97
62137690--62138416	46	15.8	46	100	0	1454	32	28	17	21	1.96
62148856--62148898	18	2.4	18	92	7	70	18	4	0	76	0.95
62149943--62150002	25	2.4	25	85	2	75	30	5	3	61	1.33
62149859--62150066	26	8.3	26	65	21	88	30	7	2	59	1.40
62149969--62150104	22	5.5	23	71	18	80	30	8	2	58	1.41
62150185--62150238	26	2.0	27	85	7	74	40	7	0	51	1.30
62155301--62155341	14	3.2	13	86	6	57	21	7	7	63	1.45
62156656--62156712	29	2.0	28	80	12	64	36	5	22	35	1.77
62162350--62162577	46	5.0	46	89	1	305	38	14	24	22	1.91
62175302--62175343	21	2.0	21	95	0	75	52	16	7	23	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62175717--62175751	18	1.9	18	88	0	52	80	5	14	0	0.89
62176426--62176472	24	2.0	24	84	16	62	31	0	17	51	1.46
62178260--62178297	18	2.1	18	90	0	58	26	31	2	39	1.70
62178544--62178581	18	2.1	18	95	0	67	57	23	7	10	1.58
62180304--62180355	25	2.1	25	85	0	68	36	9	15	38	1.80
62182051--62182108	22	2.6	22	81	7	64	41	17	5	36	1.72
62182087--62182158	19	3.9	19	85	10	114	36	15	9	38	1.80
62182080--62182158	35	2.2	37	84	13	112	35	16	8	39	1.80
62182119--62182156	17	2.5	15	87	12	51	34	15	10	39	1.82
62182504--62182694	45	4.3	45	87	1	249	25	29	12	32	1.93
62182504--62182694	89	2.1	90	88	1	285	25	29	12	32	1.93
62182523--62182777	134	1.9	136	83	7	331	27	27	14	30	1.95
62182717--62183089	78	4.8	78	91	1	577	24	23	19	32	1.97
62193089--62193149	31	2.0	31	96	0	113	24	31	16	27	1.96
62194600--62194626	12	2.2	12	100	0	54	44	40	0	14	1.46
62194902--62194936	18	2.0	18	88	5	54	68	0	0	31	0.90
62195189--62195246	22	2.6	22	81	7	64	41	17	5	36	1.72
62195225--62195279	18	2.9	19	89	5	94	36	14	12	36	1.84
62197743--62197870	47	2.7	47	81	0	148	32	26	17	22	1.97
62198407--62198471	28	2.3	29	81	7	71	29	23	3	44	1.68
62202619--62202688	21	3.3	21	92	4	106	18	21	15	44	1.87
62202636--62202792	21	7.5	21	76	3	120	18	19	15	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62207349--62207427	33	2.4	34	93	2	133	22	29	30	17	1.97
62208286--62208372	41	2.1	41	91	2	140	26	16	14	42	1.87
62210455--62210499	13	3.3	14	77	22	51	60	0	4	35	1.17
62212283--62212329	20	2.3	20	85	7	60	19	34	31	14	1.92
62212933--62213004	37	1.9	38	88	2	110	38	8	33	19	1.82
62216540--62216569	15	2.0	15	93	0	51	3	20	6	70	1.25
62217562--62217639	40	2.0	40	87	5	113	19	14	33	33	1.91
62218288--62218356	34	2.0	34	94	0	120	27	23	21	27	1.99
62218493--62218532	21	1.9	21	89	0	62	40	17	20	22	1.92
62220815--62220871	25	2.3	25	84	0	69	19	26	21	33	1.97
62221630--62221670	21	2.0	21	86	9	59	12	7	31	48	1.68
62221877--62221975	52	1.9	52	83	4	128	21	34	22	22	1.97
62229022--62229062	21	2.0	21	90	0	64	19	29	21	29	1.98
62236206--62236312	52	2.1	52	98	0	205	27	22	26	24	2.00
62244140--62244346	73	2.8	72	81	6	229	28	18	24	28	1.98
62244145--62244833	241	2.9	235	85	5	920	28	18	22	30	1.97
62244451--62244758	164	1.9	165	87	4	458	28	18	22	30	1.97
62244619--62244884	73	3.6	72	90	5	401	28	19	22	28	1.98
62246660--62246704	22	2.0	22	100	0	90	77	4	4	13	1.07
62246911--62246965	27	2.0	28	82	10	69	32	0	21	45	1.52
62247462--62247564	40	2.6	40	82	0	116	25	13	24	36	1.92
62247552--62247653	28	3.6	28	97	0	186	25	14	28	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62249669--62249705	18	2.0	19	89	5	58	72	8	0	18	1.08
62249707--62249759	11	4.6	12	81	4	56	66	5	0	28	1.15
62249798--62249835	17	2.2	17	90	0	58	65	5	2	26	1.27
62249959--62250099	71	2.0	71	98	0	273	17	32	26	24	1.96
62251960--62251995	18	2.0	18	100	0	72	27	27	27	16	1.97
62262541--62262642	50	2.0	51	96	1	188	50	12	9	27	1.72
62265145--62265193	23	2.2	22	88	3	71	67	4	6	22	1.30
62274863--62274925	27	2.4	27	97	2	119	46	22	3	28	1.67
62278042--62278093	19	2.8	19	83	11	63	36	0	17	46	1.48
62280298--62280411	60	1.9	60	87	3	167	33	21	11	33	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310