genome.fa.s13.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  197  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64439418--64439526	54	2.0	54	89	3	166	14	22	22	39	1.91
64439424--64439548	54	2.3	55	80	5	130	17	24	20	38	1.93
64444092--64444144	26	2.2	24	83	12	65	39	3	22	33	1.72
64444099--64444154	26	2.2	26	96	0	103	32	7	25	35	1.83
64445687--64446545	43	20.3	43	94	2	1300	38	20	18	21	1.93
64450577--64450614	20	1.9	20	88	0	58	31	18	5	44	1.72
64453064--64453193	41	3.2	41	86	4	165	36	24	20	18	1.94
64453265--64453359	41	2.3	41	89	7	140	35	24	21	18	1.95
64452994--64453362	201	1.8	202	98	0	722	34	23	14	26	1.94
64454654--64454731	26	3.0	26	90	0	129	17	11	30	39	1.86
64455117--64455170	26	2.1	26	100	0	108	38	3	20	37	1.70
64458211--64458241	12	2.5	13	94	5	55	77	0	22	0	0.77
64458454--64458478	13	1.9	13	100	0	50	32	0	20	48	1.50
64459375--64459431	28	2.0	28	100	0	114	43	7	14	35	1.72
64459589--64459706	44	2.8	41	76	13	121	27	15	22	34	1.94
64459588--64459760	43	4.0	43	72	8	154	26	15	24	33	1.95
64462705--64462763	25	2.4	24	88	5	91	33	3	40	22	1.70
64463624--64463654	16	2.0	15	93	6	53	51	19	19	9	1.74
64464073--64464178	27	3.9	26	84	7	131	16	23	22	36	1.94
64464073--64464182	54	2.0	54	91	3	177	16	23	21	38	1.93
64470435--64470493	25	2.4	24	88	5	91	33	3	40	22	1.70
64471435--64471573	27	5.2	26	83	6	152	16	23	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64471435--64471573	54	2.6	55	84	6	169	16	23	22	37	1.94
64471476--64471595	54	2.2	54	79	8	136	17	23	20	39	1.92
64473662--64473694	11	3.3	10	88	12	50	33	9	0	57	1.30
64477603--64477701	49	2.0	49	80	9	112	44	15	19	21	1.86
64481677--64481813	41	3.3	41	86	0	193	33	13	29	23	1.92
64487461--64487579	39	3.1	39	80	9	136	26	26	19	27	1.99
64487484--64487579	39	2.5	40	91	5	160	26	28	19	26	1.99
64490526--64490945	80	5.2	80	95	0	705	28	29	19	22	1.98
64490514--64490952	40	11.0	40	86	0	590	28	28	19	22	1.98
64491059--64491152	47	2.0	46	97	2	179	36	25	6	30	1.81
64492256--64492364	37	2.9	37	93	0	173	27	30	18	23	1.98
64492513--64492810	48	6.0	48	92	4	445	31	26	6	35	1.82
64492530--64492813	152	1.9	148	94	2	496	31	26	6	36	1.81
64492903--64493067	48	3.4	48	89	6	258	31	25	6	36	1.80
64493051--64493083	16	2.1	16	100	0	66	24	30	12	33	1.91
64495826--64495965	70	2.0	70	98	0	271	22	30	18	27	1.97
64497060--64497301	40	6.1	40	92	0	367	29	30	19	19	1.97
64497060--64497546	120	4.2	120	80	8	565	29	29	20	20	1.98
64497279--64497325	24	2.0	24	100	0	94	38	29	21	10	1.87
64497239--64497365	64	2.0	64	92	0	209	32	29	20	17	1.95
64497199--64497405	104	2.0	104	94	0	360	31	30	20	17	1.96
64497132--64497485	184	1.9	184	92	0	600	30	30	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64497084--64497525	224	2.0	224	94	0	785	30	29	19	20	1.97
64497303--64497543	80	3.0	80	95	0	419	28	29	20	21	1.98
64497303--64497550	40	6.2	40	87	0	343	29	28	20	21	1.98
64498808--64499541	37	19.8	37	98	0	1407	24	32	18	24	1.97
64499685--64500508	48	17.0	48	88	5	1011	30	27	7	35	1.84
64499922--64499978	27	2.1	27	93	0	96	29	31	5	33	1.80
64499874--64500090	75	3.0	75	84	5	288	29	28	7	35	1.84
64499685--64500508	200	4.3	192	81	7	957	30	27	7	35	1.84
64508337--64508436	50	2.0	50	96	0	182	39	15	35	11	1.82
64512642--64512770	44	2.9	44	84	2	179	29	11	26	32	1.91
64512857--64513266	87	4.7	87	78	6	407	33	18	20	27	1.96
64512756--64513168	176	2.4	176	91	0	659	34	18	19	26	1.95
64516049--64516156	24	4.5	24	74	4	74	26	16	29	26	1.97
64520640--64520753	38	3.2	38	65	27	113	28	43	14	13	1.83
64520600--64520754	68	2.5	61	81	15	206	27	46	12	13	1.79
64520621--64520756	68	2.0	68	98	0	263	26	44	14	13	1.83
64522427--64522532	26	4.1	26	86	6	153	36	24	5	33	1.79
64522427--64522532	51	2.1	52	89	5	162	36	24	5	33	1.79
64532523--64532967	26	17.1	26	92	0	737	33	24	8	33	1.87
64532523--64532967	78	5.7	78	99	0	863	33	24	8	33	1.87
64539490--64539611	61	2.0	61	86	0	172	34	17	23	24	1.96
64542736--64542913	27	6.6	27	83	3	178	29	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64542757--64542912	82	1.9	81	86	3	224	29	27	15	27	1.96
64542736--64542912	54	3.3	54	81	6	196	29	27	15	27	1.96
64549740--64549835	42	2.3	43	87	5	151	32	29	27	11	1.91
64552759--64552797	14	2.7	14	80	4	51	76	5	17	0	0.96
64553048--64553103	21	2.7	21	78	15	62	35	0	16	48	1.46
64553469--64553525	5	11.2	5	82	1	51	33	0	26	40	1.56
64553488--64553525	15	2.5	15	95	0	67	39	0	26	34	1.57
64553934--64554128	45	4.3	45	86	0	219	20	18	19	42	1.90
64554308--64554498	18	10.6	18	73	14	135	37	12	13	36	1.83
64554296--64554578	36	7.6	36	70	14	182	37	12	14	35	1.84
64554537--64554578	18	2.3	18	87	0	57	38	11	16	33	1.86
64555876--64555908	15	2.1	16	88	5	50	6	18	0	75	1.00
64557609--64557798	94	2.0	94	98	0	371	31	21	18	29	1.97
64563953--64564092	40	3.5	39	75	13	133	26	27	21	25	1.99
64566092--64566162	37	1.9	37	85	0	97	26	29	21	22	1.99
64566281--64566402	47	2.6	47	80	3	138	27	30	9	32	1.88
64571007--64571135	46	2.8	46	84	3	152	23	16	27	33	1.95
64571007--64571135	47	2.8	46	85	1	159	23	16	27	33	1.95
64577845--64577905	31	2.0	31	90	0	95	36	26	26	11	1.90
64580193--64580383	47	4.1	47	87	1	240	34	9	29	26	1.89
64580357--64580447	46	2.0	46	88	0	137	34	8	30	26	1.87
64580791--64581655	72	12.0	72	100	0	1730	30	13	22	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64585907--64585978	36	2.0	36	97	0	135	27	15	18	38	1.90
64588556--64588595	14	2.9	14	88	0	62	30	12	20	37	1.89
64588576--64588668	14	6.6	14	78	2	87	36	18	12	32	1.89
64588557--64588667	28	3.9	28	78	2	96	35	17	14	33	1.90
64589978--64590047	35	2.0	35	94	0	122	35	27	12	24	1.92
64595073--64595235	85	1.9	86	83	3	213	31	19	17	31	1.95
64599508--64599567	24	2.2	28	83	16	74	63	6	0	30	1.20
64599552--64599625	28	2.6	28	85	6	87	67	8	5	18	1.36
64599564--64599625	29	2.2	28	85	2	79	67	8	6	17	1.37
64600988--64601033	16	2.8	16	76	3	56	45	19	2	32	1.62
64607994--64608045	24	2.2	24	89	0	77	53	7	3	34	1.48
64608489--64608561	35	2.1	34	87	2	101	36	15	9	38	1.80
64609740--64609811	14	4.7	15	78	10	67	59	2	2	34	1.26
64609729--64609811	14	6.0	14	71	20	59	59	2	2	36	1.24
64609939--64609977	16	2.4	16	79	12	53	69	2	0	28	1.02
64609942--64609980	15	2.5	15	91	4	60	66	2	0	30	1.05
64609945--64610015	37	1.9	37	86	11	101	61	1	2	33	1.19
64609948--64610015	13	5.2	13	80	19	72	61	1	2	33	1.20
64611468--64611508	21	2.0	21	90	0	64	36	14	7	41	1.74
64613445--64613488	18	2.4	18	84	0	61	45	20	6	27	1.76
64613694--64613726	17	2.1	16	88	11	50	51	6	3	39	1.42
64614432--64614468	18	2.1	18	94	0	65	32	13	10	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64615267--64615328	19	3.0	21	79	13	67	40	1	0	58	1.08
64615261--64615327	32	2.1	31	83	8	82	41	1	0	56	1.08
64615553--64615618	31	2.1	31	86	5	89	37	16	4	40	1.69
64620246--64620510	145	1.8	145	90	1	433	45	20	4	29	1.72
64620493--64620521	6	4.8	6	100	0	58	68	17	0	13	1.20
64621127--64621181	22	2.5	23	79	8	69	43	0	1	54	1.10
64623230--64623255	13	2.0	13	100	0	52	30	7	30	30	1.85
64623735--64623777	17	2.5	17	76	3	50	65	0	0	34	0.93
64626571--64626725	77	2.0	77	97	0	292	27	7	25	40	1.81
64629846--64629949	26	4.0	26	93	0	181	32	7	24	35	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310