genome.fa.s13.2.7.7.80.10.50.1000.300.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  300  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98930579--98930761	79	2.3	80	81	7	203	25	27	22	25	2.00
98930577--98930761	40	4.7	40	82	6	207	25	27	22	24	2.00
98938032--98938110	41	1.9	42	86	2	115	16	24	37	21	1.93
98941435--98941554	48	2.5	48	82	2	145	27	21	15	35	1.93
98944536--98944711	46	3.8	46	73	12	171	21	21	28	28	1.98
98944533--98944704	93	1.8	93	91	0	281	21	21	29	27	1.99
98951108--98951208	41	2.6	38	81	6	121	47	8	3	39	1.53
98952823--98952870	26	1.9	24	87	8	69	64	6	0	29	1.18
98952857--98952899	21	2.0	22	81	4	52	69	9	2	18	1.26
98956166--98956253	7	12.0	7	89	2	86	48	34	0	17	1.47
98956181--98956222	8	5.2	8	94	0	66	59	28	0	11	1.33
98956181--98956236	16	3.6	16	85	7	80	55	32	0	12	1.37
98958622--98958688	20	3.3	20	91	0	107	34	11	22	31	1.90
98958737--98958893	24	6.4	24	88	5	208	31	21	20	26	1.98
98958738--98958887	50	3.0	50	88	5	234	32	20	19	27	1.97
98961935--98962013	39	2.0	39	97	0	149	35	10	29	25	1.88
98967035--98967101	20	3.3	20	89	0	98	35	11	20	31	1.89
98967147--98967317	24	7.0	24	84	7	202	30	21	20	27	1.98
98967148--98967279	50	2.7	48	88	3	192	31	20	20	27	1.97
98967147--98967317	74	2.3	72	87	6	238	30	21	20	27	1.98
98971015--98971047	15	2.1	16	88	5	50	54	9	9	27	1.62
98971189--98971228	16	2.5	16	88	8	55	82	5	12	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98971494--98971545	21	2.5	21	93	3	88	13	17	40	28	1.87
98979461--98979633	46	3.7	46	76	7	179	21	20	27	30	1.98
98979458--98979628	93	1.8	93	91	0	279	21	21	28	29	1.98
98982879--98983227	85	4.1	85	99	0	680	38	8	26	25	1.84
98985421--98985965	46	11.7	46	93	1	829	30	8	31	29	1.88
99002596--99002631	17	2.1	17	100	0	72	41	36	0	22	1.54
99005175--99005206	16	2.0	16	100	0	64	18	6	25	50	1.70
99010871--99011189	40	7.7	40	86	6	431	31	19	26	22	1.98
99010952--99010978	13	2.1	13	100	0	54	25	22	22	29	1.99
99010912--99011016	50	2.0	52	92	5	178	30	19	24	25	1.98
99016017--99016060	21	2.1	21	95	0	79	43	13	25	18	1.86
99016110--99016310	68	3.0	67	76	8	174	38	8	21	30	1.84
99016284--99016455	68	2.5	66	76	15	154	36	14	25	24	1.93
99022291--99022375	40	2.1	40	86	4	118	36	27	16	20	1.93
99024770--99024996	29	7.8	29	73	4	163	20	25	15	37	1.92
99024841--99025027	58	3.2	57	83	1	212	23	25	13	37	1.91
99025084--99025122	14	2.7	15	84	8	53	64	2	2	30	1.21
99030144--99030303	83	1.9	84	93	1	277	25	18	11	45	1.83
99034799--99034835	6	6.2	6	100	0	74	0	16	0	83	0.64
99037765--99037821	26	2.2	26	96	0	105	28	17	12	42	1.85
99039725--99039837	46	2.5	46	83	2	138	22	21	11	45	1.83
99039819--99039934	45	2.6	45	87	0	169	21	23	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99043654--99043686	17	1.9	17	100	0	66	21	54	0	24	1.45
99046071--99046114	22	1.9	24	86	9	65	43	2	13	40	1.57
99048445--99048486	20	2.1	20	86	0	57	23	30	16	28	1.96
99050792--99050885	36	2.6	36	81	3	116	26	22	27	23	1.99
99051234--99051267	17	2.0	18	88	11	54	41	8	0	50	1.34
99052333--99052358	12	2.2	12	100	0	52	26	23	7	42	1.81
99062520--99062588	34	2.0	34	100	0	138	40	14	8	36	1.77
99066823--99066873	24	2.1	24	96	0	93	50	0	11	37	1.39
99073917--99074027	46	2.5	44	81	10	109	30	18	27	23	1.97
99074657--99074692	18	2.0	18	100	0	72	11	5	27	55	1.57
99077178--99077258	17	4.4	21	77	22	69	41	8	14	34	1.77
99077143--99077249	17	5.9	19	94	4	163	40	10	14	35	1.79
99077228--99077272	23	2.0	22	82	4	54	42	2	17	37	1.62
99077539--99077573	18	2.0	17	88	5	52	31	0	0	68	0.90
99077586--99077635	25	2.0	25	96	0	91	26	8	0	66	1.19
99086104--99086402	78	3.8	78	88	3	411	32	18	24	25	1.97
99086425--99086601	45	4.0	45	88	1	257	29	12	30	26	1.93
99086432--99086601	89	1.9	89	90	0	268	28	13	30	27	1.94
99086967--99087064	35	2.7	37	87	12	150	37	10	16	35	1.82
99086967--99087057	19	4.9	19	92	8	161	37	10	15	36	1.83
99086967--99087080	19	5.8	22	87	10	96	36	9	15	37	1.81
99087346--99087380	18	2.0	17	88	5	52	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99095226--99095524	78	3.8	78	88	3	420	31	18	24	25	1.97
99095541--99095768	44	5.1	45	88	1	298	31	14	29	25	1.94
99095536--99095768	89	2.6	91	85	4	321	31	13	29	24	1.94
99096101--99096198	35	2.7	37	87	12	150	37	10	16	35	1.82
99096101--99096191	19	4.9	19	92	8	161	37	10	15	36	1.83
99096101--99096214	19	5.8	22	87	10	96	36	9	15	37	1.81
99096480--99096516	19	2.0	18	89	5	56	29	0	0	70	0.88
99101663--99101773	47	2.4	47	83	6	145	35	22	16	26	1.95
99102598--99102643	22	2.0	23	95	4	85	8	17	0	73	1.07
99108953--99109063	47	2.4	47	83	6	145	35	22	16	26	1.95
99109826--99109854	4	7.2	4	100	0	58	0	24	0	75	0.80
99121058--99121104	22	2.2	21	84	3	58	40	27	29	2	1.68
99126425--99126454	14	2.1	14	100	0	60	43	0	13	43	1.43
99126558--99126591	18	1.9	18	88	5	52	29	0	5	64	1.17
99127256--99127288	10	3.2	11	87	12	52	21	0	0	78	0.75
99129907--99129942	18	1.9	19	88	5	56	50	19	11	19	1.77
99131887--99131947	25	2.4	26	89	8	90	16	3	3	77	1.04
99131952--99131995	4	10.5	4	83	9	52	18	2	2	77	0.98
99131937--99131992	26	2.1	26	87	9	78	14	5	3	76	1.09
99131952--99131992	13	3.2	13	85	0	64	17	2	2	78	0.98
99132033--99132138	21	4.9	22	81	14	114	44	0	0	54	1.06
99132202--99132262	23	2.7	24	80	7	65	39	1	1	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99132202--99132271	22	3.1	22	74	10	61	38	1	1	58	1.16
99132245--99132283	16	2.4	17	91	8	64	38	0	0	61	0.96
99135662--99135735	30	2.5	30	84	0	85	28	20	25	25	1.99
99146831--99146885	20	2.5	23	77	14	71	36	1	0	61	1.06
99147140--99147212	34	2.1	34	82	9	87	56	0	1	42	1.08
99147263--99147327	23	2.7	25	81	9	73	73	4	9	12	1.22
99147257--99147317	25	2.4	26	78	10	72	75	6	4	13	1.16
99147337--99147403	28	2.3	29	82	2	82	62	4	7	25	1.40
99147338--99147406	29	2.5	27	79	6	75	59	7	7	26	1.50
99150888--99150951	32	2.0	32	93	6	112	59	7	10	21	1.56
99171730--99171767	19	2.0	19	100	0	76	26	10	15	47	1.78
99175368--99175397	12	2.5	12	94	0	51	40	10	16	33	1.82
99176832--99176910	27	3.4	22	68	28	56	63	6	2	27	1.32
99191647--99191695	21	2.3	21	100	0	98	44	12	12	30	1.78
99215606--99215641	18	2.0	18	94	0	63	58	0	8	33	1.28
99224328--99224352	12	2.1	12	100	0	50	52	0	8	40	1.31
99225779--99225973	46	4.3	46	65	13	134	31	24	18	24	1.98
99225746--99226088	135	2.6	134	94	1	589	29	23	20	26	1.99
99226150--99226374	87	2.6	87	94	2	380	30	27	17	24	1.97
99226095--99226635	132	4.1	130	81	5	480	31	26	16	26	1.96
99226096--99226635	219	2.5	219	95	1	940	31	26	16	26	1.96
99226369--99226618	87	2.9	87	92	3	396	31	26	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99237736--99237986	126	2.0	126	99	0	493	38	19	14	27	1.91
99241275--99241584	157	2.0	157	86	3	437	34	20	18	27	1.95
99243754--99243921	89	1.9	89	86	4	241	50	4	3	41	1.41
99243846--99243891	19	2.4	19	81	3	56	54	2	0	43	1.12
99243842--99243899	26	2.2	27	81	3	64	53	1	1	43	1.21
99246980--99247007	5	5.6	5	100	0	56	17	0	0	82	0.68
99252173--99252310	57	2.4	57	82	11	158	26	28	14	30	1.95
99256664--99256725	31	2.0	31	90	0	97	25	27	22	24	2.00
99258328--99258353	7	3.7	7	100	0	52	53	0	0	46	1.00
99265292--99265343	15	3.6	15	80	12	56	44	0	1	53	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310