genome.fa.s13.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  113  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36172573--36172834	39	6.7	40	87	7	337	25	22	27	24	2.00
36178723--36178878	19	8.4	18	66	17	61	47	12	17	22	1.81
36178738--36178878	31	4.5	31	88	0	174	47	12	17	21	1.81
36178723--36178878	6	25.3	6	67	17	70	47	12	17	22	1.81
36179010--36179083	27	2.8	27	87	2	105	37	21	22	17	1.94
36179678--36179873	27	7.3	27	85	0	232	25	21	19	33	1.97
36179697--36179873	81	2.2	81	88	4	259	24	21	20	33	1.97
36179911--36180140	27	8.5	26	80	6	165	30	9	21	38	1.85
36179894--36180140	54	4.6	54	79	5	230	30	8	21	39	1.84
36179917--36180140	81	2.8	81	80	5	231	30	9	20	39	1.84
36182127--36182169	21	2.0	21	91	8	70	67	4	6	20	1.33
36208081--36208159	39	2.0	39	95	0	140	24	30	12	32	1.92
36212354--36212524	93	1.8	93	93	0	297	28	29	21	21	1.98
36212348--36212521	46	3.8	46	79	10	201	29	28	20	21	1.98
36219877--36219987	57	2.0	56	82	8	136	25	29	17	27	1.97
36219877--36219985	28	3.9	29	83	7	127	24	30	17	27	1.97
36220200--36220242	16	2.7	16	88	0	59	6	16	20	55	1.64
36227553--36227634	28	2.9	28	82	10	98	28	29	17	25	1.97
36227861--36227898	16	2.4	16	86	8	51	18	15	21	44	1.86
36229126--36229157	16	2.0	16	93	0	55	9	6	34	50	1.60
36234002--36234028	14	1.9	14	100	0	54	37	33	7	22	1.82
36235546--36235572	14	1.9	14	100	0	54	29	11	14	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36251230--36251272	22	2.0	22	86	9	61	37	4	18	39	1.72
36251540--36251581	18	2.3	18	100	0	84	33	4	19	42	1.72
36252720--36253130	47	8.7	47	97	0	750	32	8	30	29	1.86
36254308--36254415	54	2.0	54	98	0	207	33	2	25	37	1.71
36254558--36254749	40	4.8	40	89	0	285	23	21	28	25	1.99
36258515--36258913	49	8.3	49	94	2	643	32	7	29	30	1.85
36259032--36259110	37	2.1	37	90	0	122	24	18	31	25	1.98
36262928--36263027	44	2.3	44	92	0	173	27	18	26	29	1.98
36262954--36263043	44	2.2	39	82	11	101	25	20	24	30	1.99
36270255--36270779	262	2.0	262	98	0	1005	38	16	15	30	1.89
36271329--36271393	22	2.9	23	79	4	71	35	21	23	20	1.96
36273285--36273330	24	1.9	24	81	0	56	17	36	4	41	1.69
36275166--36275240	32	2.4	31	86	4	98	36	20	24	20	1.95
36275162--36275240	30	2.6	30	85	4	104	35	18	24	21	1.96
36275298--36275423	43	2.9	43	86	0	171	24	30	21	23	1.99
36275706--36275766	27	2.2	28	80	8	72	32	13	13	40	1.82
36283806--36283864	23	2.6	22	76	10	57	33	16	22	27	1.95
36287667--36287718	27	1.9	27	88	0	77	19	11	26	42	1.85
36296098--36296145	26	1.9	26	83	8	64	39	18	14	27	1.90
36295981--36296152	23	7.3	24	70	13	90	35	17	22	25	1.95
36300638--36300731	48	1.9	49	86	2	136	23	19	31	25	1.98
36303187--36303378	50	3.9	49	81	9	212	30	27	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36314601--36314738	49	2.8	49	84	5	172	26	16	30	26	1.97
36318502--36318623	42	2.8	42	76	15	115	32	25	15	26	1.95
36319763--36319787	13	1.9	13	100	0	50	40	24	4	32	1.73
36330206--36330248	19	2.3	19	84	8	52	23	11	25	39	1.88
36332008--36332073	26	2.5	26	77	2	69	36	36	15	12	1.84
36335531--36335654	50	2.4	50	80	9	151	37	15	12	33	1.86
36339811--36339933	50	2.4	50	82	8	167	38	14	13	34	1.85
36345242--36345332	42	2.2	41	78	9	94	32	15	23	28	1.95
36346264--36346309	24	1.9	24	95	0	83	28	2	26	43	1.66
36348911--36348938	6	4.7	6	100	0	56	17	17	17	46	1.85
36358614--36358657	17	2.8	16	80	10	54	15	20	0	63	1.31
36363997--36364034	20	1.9	20	88	0	58	42	21	28	7	1.81
36368056--36368093	6	6.0	6	93	6	58	63	34	0	2	1.09
36370184--36370387	102	2.0	101	95	0	363	37	11	6	43	1.68
36377034--36377092	29	2.0	29	93	0	100	23	23	11	40	1.88
36378382--36378644	145	1.8	145	85	3	377	41	9	8	40	1.68
36379790--36379837	25	1.9	26	87	8	73	33	29	8	29	1.86
36388806--36388837	13	2.5	13	89	0	55	31	37	25	6	1.81
36389719--36389998	47	5.9	46	70	10	190	23	30	19	27	1.98
36389768--36389986	95	2.3	95	100	0	438	24	29	19	26	1.98
36389719--36390031	47	6.6	47	67	14	151	23	29	19	27	1.98
36390377--36390439	30	2.1	30	90	0	99	26	25	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36392466--36392646	48	3.9	47	77	5	179	24	29	18	27	1.98
36398941--36399068	48	2.7	48	85	2	170	21	30	21	25	1.99
36399296--36399333	19	2.0	19	94	0	67	28	15	13	42	1.85
36400109--36400208	49	2.0	49	98	0	191	41	9	17	33	1.80
36401650--36401708	29	2.0	29	93	0	100	40	11	23	23	1.88
36414014--36414129	46	2.6	46	93	4	193	29	23	14	32	1.94
36416455--36416671	40	5.5	40	91	2	332	24	23	28	23	2.00
36423817--36424033	40	5.5	40	90	2	305	25	23	27	23	2.00
36433836--36434000	84	2.0	84	97	0	312	33	21	10	34	1.88
36438658--36438699	21	2.0	21	85	0	57	21	16	42	19	1.89
36446543--36446742	27	7.4	27	79	6	190	34	19	20	26	1.96
36446543--36446742	54	3.7	52	83	6	222	34	19	20	26	1.96
36446542--36446724	81	2.3	81	80	3	217	34	19	19	26	1.96
36447461--36447524	33	2.0	32	84	3	83	20	20	20	39	1.93
36450105--36450137	13	2.6	13	90	4	50	39	0	12	48	1.40
36451115--36451198	27	3.1	27	85	1	114	36	19	25	19	1.94
36455045--36455107	28	2.3	28	86	8	85	39	22	20	17	1.92
36455514--36455545	8	4.0	8	91	0	55	3	25	25	46	1.67
36467961--36468013	25	2.1	25	92	0	88	28	16	26	28	1.97
36467961--36468059	25	4.0	25	78	10	78	30	22	21	26	1.99
36470343--36470376	11	3.1	11	100	0	68	26	29	17	26	1.98
36478923--36478969	23	2.0	23	91	0	76	29	12	21	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36483379--36483449	29	2.5	27	76	17	72	40	1	11	46	1.48
36486464--36486545	43	1.9	43	89	0	128	25	4	34	35	1.78
36492576--36492662	25	3.5	24	76	4	77	22	21	21	33	1.97
36507790--36507824	17	2.1	17	88	0	52	28	0	8	62	1.24
36507874--36507948	30	2.5	30	81	10	82	34	2	6	56	1.40
36507920--36507975	24	2.3	25	82	14	64	30	3	8	57	1.47
36508032--36508068	19	1.9	19	94	0	65	32	13	2	51	1.55
36509493--36509662	46	3.7	46	76	14	188	22	19	28	29	1.98
36509487--36509657	93	1.8	93	91	2	281	22	19	28	29	1.98
36516601--36516672	37	1.9	37	97	0	135	31	19	30	18	1.95
36528826--36528880	25	2.3	23	78	12	58	43	3	16	36	1.65
36530382--36530552	93	1.8	93	91	2	281	29	28	19	22	1.98
36530377--36530546	46	3.7	46	76	14	188	29	28	19	22	1.98
36531971--36532007	19	1.9	19	94	0	65	51	2	13	32	1.55
36532064--36532119	24	2.3	24	82	14	62	57	8	3	30	1.47
36532091--36532165	30	2.5	30	81	10	82	56	6	2	34	1.40
36532215--36532249	17	2.1	17	88	0	52	62	8	0	28	1.24
36540220--36540259	21	1.9	21	84	0	53	62	2	12	22	1.42
36542804--36542844	17	2.4	17	100	0	82	60	7	21	9	1.52
36544008--36544059	26	2.0	26	96	0	95	40	3	11	44	1.59
36550116--36550159	22	2.0	22	95	0	79	54	9	6	29	1.58
36550179--36550219	20	2.0	20	90	9	66	48	2	7	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36551709--36551746	19	2.0	19	85	10	51	57	0	2	39	1.12
36551719--36551786	36	1.9	36	88	8	104	63	0	0	36	0.95
36554193--36554247	21	2.6	21	76	0	56	20	30	32	16	1.94
36560930--36560997	27	2.5	27	85	0	91	38	26	19	16	1.92
36562227--36562662	217	2.0	218	97	0	820	37	18	19	24	1.94
36586650--36586689	13	3.1	13	82	10	55	22	10	10	57	1.61
36589251--36589387	61	2.2	61	93	0	229	40	3	18	37	1.68
36590452--36590508	19	2.8	20	84	12	73	24	1	1	71	1.04
36591145--36591290	3	48.7	3	100	0	292	32	0	0	67	0.91
36593318--36593353	18	2.0	18	94	0	63	25	16	30	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310