genome.fa.s13.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  180  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58527702--58527734	14	2.3	15	94	5	59	15	27	6	51	1.66
58531563--58531624	25	2.6	23	87	9	97	54	3	1	40	1.26
58531568--58531616	25	2.0	25	100	0	98	57	4	0	38	1.18
58533224--58533252	2	14.5	2	100	0	58	51	0	0	48	1.00
58533308--58533339	13	2.5	13	100	0	64	43	21	9	25	1.82
58535210--58535244	17	2.1	17	89	5	54	65	0	8	25	1.21
58536760--58536784	13	1.9	13	100	0	50	40	8	20	32	1.81
58537020--58537988	206	4.7	206	92	0	1481	29	22	17	30	1.97
58538860--58538904	23	2.0	23	82	4	56	2	28	0	68	1.01
58551609--58551647	20	2.0	20	84	0	51	56	0	2	41	1.13
58551777--58551811	16	2.1	17	94	5	63	62	0	11	25	1.28
58553409--58553435	8	3.4	8	100	0	54	51	14	0	33	1.43
58554744--58554801	28	2.1	28	93	0	98	15	15	15	53	1.73
58556670--58557018	174	2.0	174	99	0	689	38	17	15	28	1.91
58572131--58572238	26	4.2	26	98	0	207	36	25	7	30	1.84
58576058--58576121	21	3.0	22	72	9	69	35	23	20	20	1.96
58576220--58576265	6	7.8	6	80	9	51	34	19	2	43	1.63
58577082--58577131	7	7.1	7	100	0	100	58	0	0	42	0.98
58577074--58577131	21	2.8	21	94	5	100	56	0	0	43	0.99
58577422--58577559	45	3.1	45	70	17	153	47	4	2	45	1.34
58577401--58577573	87	2.0	87	98	0	337	45	5	1	47	1.37
58577401--58577530	42	3.0	42	69	18	122	43	5	1	49	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58577422--58577582	45	3.6	44	70	17	136	46	4	3	45	1.40
58577647--58577696	23	2.2	23	86	10	68	54	2	0	44	1.11
58577826--58577872	19	2.4	19	76	20	51	36	23	4	36	1.75
58579053--58579098	21	2.1	22	92	4	76	23	2	0	73	0.94
58579054--58579099	18	2.6	18	89	3	67	23	2	0	73	0.94
58579227--58579267	3	13.7	3	94	0	73	31	2	0	65	1.05
58582216--58582262	7	6.4	7	80	9	58	55	2	2	40	1.24
58583451--58583479	15	2.0	15	93	6	51	34	6	13	44	1.71
58596892--58597048	33	4.8	33	73	3	111	30	15	24	29	1.95
58600909--58600971	31	2.0	31	100	0	126	39	3	25	31	1.71
58605800--58605849	24	2.1	24	96	0	91	10	22	22	46	1.81
58607168--58607207	12	3.5	12	80	13	57	47	5	0	47	1.24
58607161--58607207	22	2.1	22	100	0	94	48	4	0	46	1.21
58613638--58613670	17	2.0	17	88	5	50	51	0	0	48	1.00
58615796--58615887	45	2.0	45	97	0	175	34	23	7	33	1.84
58617320--58617364	21	2.1	21	83	0	54	53	20	4	22	1.63
58619295--58619323	13	2.1	14	93	6	51	0	24	0	75	0.80
58625820--58625872	26	2.0	26	82	7	63	66	3	1	28	1.20
58625966--58626013	20	2.4	21	82	10	64	68	6	2	22	1.23
58626066--58626270	102	2.0	102	98	0	392	30	20	10	38	1.86
58626646--58626815	40	4.3	41	88	3	233	27	28	19	24	1.98
58636806--58636923	40	3.0	40	91	2	175	27	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58641822--58641881	7	8.6	7	87	5	61	31	0	0	68	0.90
58641807--58641889	22	3.8	22	84	9	107	26	0	4	68	1.09
58641822--58641872	7	6.9	8	84	10	65	33	0	0	66	0.92
58641790--58641883	8	12.5	8	77	15	67	27	0	3	69	1.04
58641815--58641883	14	4.9	14	78	3	75	28	0	1	69	0.97
58642772--58642952	41	4.4	41	83	2	204	22	24	19	33	1.97
58642772--58642952	81	2.2	83	85	2	233	22	24	19	33	1.97
58643007--58643033	12	2.2	12	100	0	54	48	29	14	7	1.71
58653177--58653446	46	5.7	47	72	13	182	23	29	19	27	1.98
58653220--58653489	140	1.9	141	82	8	336	24	28	18	28	1.98
58658774--58658830	16	3.4	16	69	9	51	19	22	19	38	1.93
58658805--58659027	46	4.9	46	92	1	333	20	23	13	42	1.88
58660056--58660325	46	5.7	47	74	11	198	23	30	20	26	1.98
58660099--58660368	140	1.9	141	83	8	354	24	29	19	27	1.98
58665653--58665709	16	3.4	16	69	9	51	19	22	19	38	1.93
58665684--58665906	46	4.9	46	92	1	333	20	23	13	42	1.88
58666714--58666829	51	2.3	51	93	0	196	26	20	10	42	1.84
58668040--58668087	11	4.2	11	79	10	51	62	2	0	35	1.07
58672511--58672780	46	5.7	47	74	11	198	23	30	20	26	1.98
58672554--58672823	140	1.9	141	83	8	354	24	29	19	27	1.98
58678108--58678164	16	3.4	16	69	9	51	19	22	19	38	1.93
58678139--58678361	46	4.9	46	92	1	333	20	23	13	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58679169--58679284	51	2.3	51	93	0	196	26	20	10	42	1.84
58681459--58681501	20	2.2	20	91	0	68	2	18	25	53	1.56
58682222--58682251	9	3.3	9	90	0	51	20	0	70	10	1.16
58684123--58684293	94	1.8	92	85	7	238	23	29	20	26	1.99
58686631--58686707	27	2.9	27	79	11	86	76	2	5	15	1.07
58686637--58686707	26	2.7	27	82	6	83	76	2	5	15	1.10
58711494--58711545	23	2.3	22	80	12	61	17	11	5	65	1.44
58711753--58711789	18	2.1	19	90	10	60	64	0	10	24	1.25
58719556--58719838	27	10.6	27	83	3	320	41	18	13	26	1.87
58719556--58719838	81	3.5	79	86	2	354	41	18	13	26	1.87
58721651--58721684	16	2.1	16	100	0	68	50	26	5	17	1.69
58722916--58722965	20	2.8	17	77	16	55	52	2	4	42	1.31
58722956--58723026	36	2.0	35	81	13	83	53	5	2	38	1.39
58726953--58726996	13	3.3	13	83	3	52	47	0	6	45	1.29
58729556--58729632	33	2.2	35	86	9	104	28	6	2	62	1.33
58731299--58731351	20	2.7	21	80	11	60	60	1	1	35	1.19
58732991--58733024	16	2.1	16	94	0	59	61	0	2	35	1.11
58734830--58734885	5	11.4	5	96	3	105	41	0	0	58	0.98
58736017--58736120	47	2.2	48	81	5	122	19	17	21	42	1.89
58736324--58736428	18	5.9	18	73	2	95	35	6	15	42	1.73
58741700--58741773	23	3.3	22	74	24	66	52	0	10	36	1.36
58741729--58741762	16	2.1	16	89	10	52	55	0	8	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58741946--58742052	47	2.3	47	85	0	133	18	20	19	41	1.91
58742256--58742361	18	5.9	18	74	5	81	33	7	15	43	1.74
58742256--58742361	36	3.0	36	81	1	106	33	7	15	43	1.74
58742285--58742361	35	2.2	36	83	2	93	35	7	16	40	1.78
58749027--58749071	21	2.1	21	100	0	90	40	20	13	26	1.89
58751466--58751572	41	2.5	42	76	11	112	28	19	24	27	1.99
58755592--58755775	27	6.9	27	73	4	122	31	10	19	38	1.86
58763268--58763437	45	3.9	45	75	9	147	25	17	27	30	1.97
58775846--58775885	16	2.6	16	88	4	55	22	2	2	72	1.09
58789155--58789189	19	1.9	17	88	11	52	22	0	25	51	1.48
58791404--58791471	29	2.3	29	85	5	93	27	30	13	27	1.94
58791293--58791620	174	1.9	174	96	0	611	31	24	14	29	1.94
58791573--58791648	29	2.6	28	85	10	100	28	28	15	26	1.96
58797444--58797470	13	2.1	13	100	0	54	40	0	0	59	0.98
58798447--58798484	20	1.9	20	88	0	58	34	0	5	60	1.19
58806299--58806325	13	2.1	13	100	0	54	40	0	0	59	0.98
58807302--58807339	20	1.9	20	88	0	58	34	0	5	60	1.19
58817507--58817561	24	2.3	24	96	0	101	20	23	18	38	1.93
58824973--58825006	14	2.3	15	90	5	52	50	0	0	50	1.00
58828362--58828400	18	2.2	18	85	0	51	25	7	25	41	1.82
58828479--58828564	24	3.6	23	69	22	61	47	1	15	36	1.53
58830287--58830356	28	2.5	28	93	2	124	50	32	4	12	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58830541--58830573	16	2.1	16	88	5	50	42	15	3	39	1.62
58831489--58831534	18	2.6	18	82	10	58	39	0	0	60	0.97
58831669--58831698	12	2.5	12	94	0	51	43	3	0	53	1.17
58836193--58836258	33	2.0	33	84	0	87	21	21	18	39	1.93
58839842--58839897	28	2.0	28	96	0	103	48	10	8	32	1.69
58849779--58849909	67	2.0	67	95	0	235	30	14	22	32	1.94
58855449--58855495	24	2.0	24	87	8	69	46	8	6	38	1.60
58855461--58855512	24	2.2	24	82	0	59	51	5	3	38	1.44
58870186--58870218	17	1.9	17	100	0	66	60	15	0	24	1.35
58882120--58882152	16	2.1	16	100	0	66	39	6	0	54	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310