genome.fa.s13.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  161  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52761392--52761613	98	2.3	95	80	6	234	24	25	19	30	1.98
52761488--52761617	46	2.7	47	79	3	136	22	26	20	30	1.98
52772933--52773002	27	2.6	27	88	2	104	28	12	28	30	1.93
52772933--52773015	27	3.0	27	79	8	71	31	12	25	31	1.92
52773298--52773395	45	2.2	45	87	3	135	28	8	31	31	1.86
52781003--52781060	30	1.9	30	96	0	107	39	8	22	29	1.84
52788876--52789039	29	5.7	29	75	5	100	38	10	27	23	1.87
52788875--52789096	116	1.9	117	91	0	365	40	10	26	22	1.87
52788911--52789140	29	7.9	29	73	8	101	40	12	25	21	1.89
52793024--52793078	26	2.1	26	86	0	74	32	23	21	21	1.98
52800598--52800732	43	3.1	43	81	6	155	26	17	28	28	1.97
52800618--52800732	45	2.6	43	82	6	151	28	15	26	28	1.96
52801002--52801199	38	5.2	38	88	2	247	21	22	25	31	1.98
52807675--52807737	32	2.0	31	96	0	108	30	36	15	15	1.90
52816427--52816471	23	2.0	23	100	0	90	33	26	17	22	1.96
52817284--52817456	46	3.8	45	76	13	181	22	21	26	29	1.99
52817281--52817451	93	1.8	93	91	0	279	22	21	27	28	1.99
52836153--52836224	36	2.0	36	100	0	144	38	11	16	33	1.84
52837094--52837155	31	2.0	31	96	0	115	29	37	9	24	1.87
52841813--52841891	37	2.1	37	86	4	106	25	29	18	26	1.98
52842010--52843176	47	24.8	47	98	0	2181	29	28	8	33	1.87
52845719--52845759	19	2.1	20	95	4	75	70	4	24	0	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52855382--52855502	46	2.6	44	83	7	127	32	17	27	23	1.96
52855565--52855695	49	2.7	49	82	7	167	26	22	29	21	1.99
52857062--52857134	37	2.0	37	91	2	121	21	12	28	36	1.90
52859564--52859664	24	4.2	24	90	0	157	34	2	41	20	1.68
52861099--52861209	27	4.1	27	82	7	120	19	24	19	36	1.95
52870888--52870948	30	2.0	30	83	0	77	29	22	4	42	1.75
52875576--52875751	46	3.8	46	78	12	207	21	20	28	30	1.98
52883149--52883325	46	3.8	46	77	12	200	21	20	28	28	1.98
52895940--52895991	27	1.9	27	84	0	68	32	21	25	21	1.98
52902917--52902995	27	2.9	27	79	9	88	32	20	24	22	1.97
52903316--52903347	8	4.0	8	95	0	55	9	37	28	25	1.87
52907046--52907146	41	2.5	41	88	0	157	22	19	27	29	1.98
52909472--52909627	26	6.1	26	87	1	228	28	23	21	27	1.99
52909677--52909739	20	3.1	20	90	2	99	31	20	11	36	1.88
52916631--52916723	47	2.0	47	95	0	168	35	23	21	19	1.96
52917707--52917812	54	2.0	54	94	0	185	34	10	28	26	1.89
52927896--52928077	26	7.1	26	88	2	255	29	23	19	28	1.98
52928127--52928201	20	3.8	20	86	6	93	32	18	10	38	1.85
52932134--52932173	21	2.0	20	90	5	62	35	0	22	42	1.54
52932139--52932181	21	2.1	21	83	12	54	32	2	20	44	1.65
52940008--52940107	40	2.5	40	76	1	101	24	30	19	27	1.98
52940086--52940259	43	4.1	43	75	11	126	25	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52943934--52944148	27	8.0	27	84	0	214	39	20	7	32	1.81
52943943--52944121	54	3.3	54	88	0	259	40	21	6	31	1.79
52943943--52944148	81	2.5	81	85	1	252	40	20	7	31	1.80
52943943--52944148	54	3.8	54	86	0	241	40	20	7	31	1.80
52944022--52944219	81	2.5	81	80	4	222	40	20	8	30	1.81
52944132--52944192	27	2.3	27	88	0	95	40	21	9	27	1.85
52944022--52944203	27	6.7	26	76	12	93	40	21	8	29	1.82
52944213--52944391	27	6.6	27	86	0	223	29	21	7	41	1.81
52944205--52944392	54	3.5	54	87	0	268	29	20	7	42	1.80
52944213--52944391	81	2.2	81	88	0	268	29	21	7	41	1.81
52944627--52944678	27	2.0	26	84	3	68	17	26	21	34	1.95
52944947--52945012	6	10.8	6	79	9	71	18	19	12	50	1.78
52944913--52945013	37	2.7	37	84	0	130	22	20	9	46	1.80
52947607--52947861	55	4.8	52	77	7	203	36	17	24	21	1.95
52947617--52947814	108	1.8	110	85	4	285	33	17	25	23	1.96
52948053--52948083	16	1.9	16	93	0	53	41	0	22	35	1.54
52951042--52951298	55	4.8	53	79	11	235	36	16	24	22	1.94
52951049--52951249	108	1.8	110	87	4	300	35	16	25	22	1.95
52951205--52951298	49	1.9	49	89	4	145	38	14	23	23	1.92
52951488--52951518	16	1.9	16	93	0	53	41	0	22	35	1.54
52958774--52958980	55	3.8	52	79	8	220	36	15	24	22	1.94
52959096--52959143	23	2.0	24	92	4	80	45	10	22	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52963721--52963845	47	2.6	48	83	1	153	31	18	21	28	1.97
52966178--52966204	13	2.1	13	100	0	54	37	7	22	33	1.82
52969831--52969994	39	4.1	39	87	9	240	20	24	30	24	1.99
52969831--52969984	82	1.9	82	93	2	265	22	25	29	22	1.99
52972321--52972422	29	3.6	29	87	1	143	29	34	13	22	1.93
52975541--52975574	18	1.9	18	88	5	52	29	14	14	41	1.86
52976691--52976814	29	4.4	28	80	5	142	33	29	12	25	1.92
52976872--52976905	18	1.9	18	88	5	52	20	41	23	14	1.89
52977768--52977854	43	2.0	43	100	0	174	25	21	27	25	2.00
52978337--52978376	15	2.7	15	88	0	62	17	17	10	55	1.69
52981460--52981543	27	3.1	27	89	3	125	21	26	21	30	1.98
52981582--52981834	54	4.6	54	78	3	238	32	10	19	37	1.85
52981582--52981819	81	2.9	82	77	7	232	32	10	18	38	1.85
52981582--52981834	27	9.3	27	78	5	204	32	10	19	37	1.85
52981813--52982036	27	8.3	27	85	2	261	40	7	21	30	1.81
52982029--52982118	27	3.3	27	81	3	101	32	11	16	40	1.84
52981813--52982061	54	4.6	54	74	7	209	39	8	21	30	1.82
52982048--52982127	27	2.9	27	84	1	97	33	10	15	41	1.80
52983477--52983541	28	2.3	28	89	0	103	29	23	7	40	1.82
52986969--52987099	48	2.8	48	84	1	174	30	15	24	29	1.95
52987063--52987139	38	2.0	38	89	0	118	29	14	25	29	1.95
52994715--52994825	27	4.2	26	85	10	143	37	22	24	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52994715--52994825	54	2.1	53	88	5	161	37	22	24	15	1.93
53001630--53001852	79	2.8	78	82	9	256	25	26	22	25	2.00
53001630--53001852	39	5.7	40	85	8	257	25	26	22	25	2.00
53008450--53008531	27	3.1	27	80	5	78	18	19	24	37	1.94
53010739--53011213	27	17.6	27	83	2	578	27	22	9	40	1.85
53011235--53011483	27	9.2	27	83	1	293	35	19	19	24	1.95
53011242--53011484	81	3.0	81	85	0	324	36	19	19	24	1.95
53011682--53011764	27	3.1	26	87	5	112	19	21	21	37	1.94
53011852--53011910	22	2.7	22	81	0	64	20	25	22	32	1.98
53017349--53018057	27	26.2	27	83	4	795	27	22	9	40	1.85
53018062--53018257	27	7.3	27	84	0	239	35	18	20	25	1.95
53018456--53018538	27	3.1	26	87	5	112	19	21	21	37	1.94
53018626--53018684	22	2.7	22	81	0	64	20	25	22	32	1.98
53018849--53018922	27	2.8	27	85	6	89	17	24	21	36	1.95
53019040--53019226	6	30.8	6	76	16	181	19	17	14	48	1.82
53019040--53019226	85	2.2	85	98	0	356	19	17	14	48	1.82
53019040--53019226	30	6.4	30	85	11	262	19	17	14	48	1.82
53029772--53029856	40	2.1	40	100	0	170	34	15	9	41	1.79
53031898--53032075	27	6.6	27	83	3	205	26	15	28	29	1.96
53031899--53032054	82	1.9	81	88	3	233	26	15	28	29	1.96
53031895--53032075	82	2.2	81	83	2	229	27	15	27	29	1.96
53036804--53037037	31	7.8	31	81	9	227	27	17	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53036847--53037027	93	1.9	93	87	2	265	27	15	30	27	1.96
53037145--53037269	49	2.8	44	84	14	175	26	14	28	31	1.95
53037184--53037284	49	2.1	49	96	3	186	26	13	27	31	1.94
53037113--53037319	91	2.3	89	84	4	247	28	14	27	29	1.95
53043371--53043401	15	2.1	15	100	0	62	29	32	12	25	1.93
53045313--53045420	27	4.0	27	81	4	119	30	18	21	29	1.97
53045405--53045746	27	12.7	27	81	6	293	38	20	9	31	1.84
53045536--53045784	81	3.0	81	80	6	184	40	18	10	30	1.84
53060098--53060141	21	2.2	20	83	4	52	6	22	4	65	1.35
53064850--53064897	15	3.3	15	73	5	53	29	0	27	43	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310