genome.fa.s13.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  142  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46395029--46395076	9	5.3	9	78	9	53	50	12	6	31	1.65
46395159--46395210	20	2.5	20	82	11	61	53	5	1	38	1.36
46395889--46395915	3	9.0	3	100	0	54	66	0	0	33	0.92
46398561--46398644	31	2.7	31	94	0	141	10	10	21	57	1.63
46400811--46400978	25	6.8	25	79	1	158	29	22	20	27	1.98
46400810--46400978	75	2.3	74	81	1	203	29	22	20	27	1.99
46402071--46402109	20	2.0	20	90	10	62	12	5	30	51	1.62
46402104--46402133	14	2.1	15	93	6	53	20	0	26	53	1.46
46406045--46406085	16	2.6	16	84	11	57	43	0	12	43	1.41
46410115--46410139	13	1.9	13	100	0	50	40	40	16	4	1.67
46411861--46411887	7	3.9	7	100	0	54	25	14	0	59	1.36
46411876--46411923	19	2.6	19	90	6	73	25	14	10	50	1.74
46414502--46414531	10	2.9	10	95	5	51	10	56	33	0	1.32
46421117--46421238	46	2.6	46	81	5	136	25	22	14	36	1.93
46424787--46424863	40	2.0	38	87	10	111	25	18	23	32	1.97
46428301--46428392	39	2.3	39	88	5	132	25	28	22	23	2.00
46428282--46428445	40	4.1	40	80	10	176	24	27	23	25	2.00
46432050--46432213	81	2.0	81	98	0	319	28	15	26	28	1.96
46432677--46432874	27	7.3	27	89	2	281	28	25	8	37	1.84
46432866--46433056	27	7.1	26	79	10	147	39	22	10	27	1.87
46432873--46433028	54	2.9	54	85	3	181	39	20	10	28	1.86
46432906--46433055	81	1.9	81	86	8	216	42	22	8	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46432906--46433113	54	3.8	54	82	5	188	41	20	8	29	1.81
46433012--46433119	27	3.9	27	77	13	103	41	18	8	31	1.80
46433160--46433233	27	2.7	27	76	12	71	37	20	20	21	1.94
46433173--46433237	27	2.4	27	82	5	78	35	18	24	21	1.96
46434040--46434109	25	2.8	25	91	0	104	27	24	22	25	2.00
46434065--46434136	25	3.0	24	80	13	76	29	22	22	26	1.99
46437693--46437878	72	2.6	74	79	10	199	30	28	18	22	1.97
46438554--46438592	20	2.0	20	85	10	53	35	20	0	43	1.52
46443867--46443911	14	3.0	15	87	6	56	57	13	15	13	1.65
46447678--46447886	72	2.9	72	80	1	204	32	26	16	24	1.96
46447756--46447907	72	2.1	72	88	0	223	34	25	14	25	1.94
46447792--46447930	72	1.9	72	85	5	192	34	27	14	23	1.94
46451189--46451284	37	2.6	37	74	9	97	17	13	27	41	1.87
46452258--46452442	50	3.7	50	80	1	156	19	14	28	37	1.91
46452358--46452465	25	4.3	25	74	4	101	15	12	33	37	1.86
46452455--46452508	25	2.2	25	93	0	90	24	22	24	29	1.99
46452324--46452549	75	3.0	75	78	0	236	20	14	27	37	1.91
46454629--46454896	46	5.7	48	72	13	159	25	20	31	23	1.98
46454678--46454796	50	2.5	48	83	11	140	27	16	31	23	1.96
46454721--46454901	50	3.7	49	73	14	169	25	19	30	23	1.98
46456592--46456859	46	5.7	48	72	13	159	25	20	31	23	1.98
46456641--46456759	50	2.5	48	83	11	140	27	16	31	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46456684--46456864	50	3.7	49	73	14	169	25	19	30	23	1.98
46458019--46458058	21	2.0	21	85	5	55	12	32	30	25	1.92
46462857--46463220	46	7.8	46	73	14	211	27	20	28	23	1.99
46462862--46463220	143	2.5	140	82	9	385	27	20	28	23	1.99
46462859--46463220	93	3.9	89	75	15	265	27	20	28	23	1.99
46463041--46463216	49	3.7	50	79	13	176	26	19	28	25	1.99
46464352--46464391	21	2.0	20	85	5	53	10	35	32	22	1.87
46469903--46469978	38	2.0	38	97	0	143	19	28	2	48	1.62
46470062--46470177	50	2.4	48	81	8	135	29	20	11	38	1.87
46471052--46471088	16	2.4	15	86	8	56	45	0	10	43	1.39
46472242--46472299	15	3.9	15	75	8	64	68	8	3	18	1.30
46472415--46472464	24	2.1	24	85	7	66	68	2	6	24	1.23
46472531--46472591	3	20.7	3	86	3	70	60	1	4	32	1.28
46472688--46472758	29	2.4	29	76	11	72	61	0	9	28	1.27
46472697--46472757	23	2.9	20	72	13	59	60	0	9	29	1.29
46476963--46477111	57	2.6	57	81	7	158	30	20	19	30	1.97
46478602--46478740	42	3.3	42	90	0	224	17	29	33	19	1.95
46482359--46482400	20	2.1	20	90	0	66	42	7	2	47	1.43
46487665--46487689	13	1.9	13	100	0	50	28	0	0	72	0.86
46488815--46488849	17	2.0	18	94	5	63	2	5	5	85	0.81
46488879--46488915	1	37.0	1	100	0	74	0	0	0	100	0.00
46490615--46490749	71	1.9	71	100	0	270	52	8	8	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46492052--46492163	55	2.0	55	98	0	215	27	17	7	47	1.74
46498834--46498870	18	2.1	18	100	0	74	35	32	10	21	1.88
46502586--46502620	17	2.1	17	89	5	54	62	0	2	34	1.10
46517745--46517948	38	5.3	38	86	4	257	19	21	26	31	1.97
46522005--46522052	11	4.2	11	79	10	60	64	0	0	35	0.94
46521999--46522054	24	2.3	24	87	3	76	60	1	0	37	1.07
46523109--46523141	17	2.0	17	94	5	59	36	15	0	48	1.45
46531678--46531888	105	2.0	105	85	0	287	36	14	9	39	1.78
46532100--46532633	266	2.0	266	99	0	1050	28	18	11	42	1.85
46533403--46533451	21	2.5	18	73	20	53	48	4	0	46	1.20
46533684--46533779	48	2.0	48	100	0	192	29	10	6	54	1.59
46534536--46534911	117	3.2	117	78	6	336	30	19	15	34	1.93
46534536--46534770	117	2.0	113	87	4	337	31	18	16	33	1.93
46535156--46535197	14	3.0	14	85	0	66	42	30	2	23	1.67
46535159--46535203	21	2.1	21	83	0	54	46	26	2	24	1.64
46535279--46535323	15	3.0	15	83	0	54	42	37	0	20	1.52
46535275--46535340	30	2.2	29	78	2	69	46	31	0	21	1.51
46535475--46535577	40	2.5	40	82	1	125	18	18	19	43	1.88
46535468--46535601	41	3.3	41	81	2	162	17	18	19	44	1.87
46550480--46550507	5	5.6	5	100	0	56	82	0	0	17	0.68
46553044--46553153	43	2.6	43	77	7	109	25	18	25	30	1.98
46556636--46556727	23	4.2	22	83	9	109	57	3	4	34	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46556634--46556727	44	2.1	45	86	5	129	57	3	4	35	1.34
46556968--46557070	23	4.8	22	82	10	115	57	2	3	35	1.32
46556966--46557085	23	5.5	21	80	16	111	59	2	3	35	1.27
46557284--46557315	17	1.9	16	93	6	55	53	12	0	34	1.39
46557389--46557476	3	29.7	3	69	15	58	62	2	6	28	1.33
46557511--46557667	3	52.3	3	65	18	60	59	3	7	29	1.39
46557323--46557703	191	2.0	189	97	1	717	60	3	8	27	1.42
46559151--46559180	14	2.1	15	93	6	53	43	0	0	56	0.99
46562433--46562569	23	6.0	24	69	20	116	60	2	8	27	1.41
46562455--46562566	18	5.3	18	67	29	62	61	2	8	26	1.39
46562444--46562592	44	3.3	44	97	1	271	63	2	8	26	1.33
46562476--46562589	21	5.3	20	66	22	70	64	1	8	25	1.32
46562553--46562697	26	5.7	26	76	15	133	66	1	10	22	1.30
46562651--46562710	26	2.3	26	80	8	68	70	3	13	13	1.30
46562731--46562786	21	2.7	20	75	10	58	62	0	8	28	1.25
46562760--46562802	23	1.9	22	81	13	52	67	0	6	25	1.15
46563195--46563244	26	2.0	26	84	4	66	40	0	10	50	1.36
46563326--46563357	15	2.2	14	94	5	55	65	0	12	21	1.25
46563461--46563521	28	2.2	28	82	5	70	52	1	14	31	1.52
46563590--46563641	5	9.6	5	76	15	50	59	1	19	19	1.47
46563564--46563625	16	3.9	16	81	8	65	59	1	12	25	1.43
46563590--46563641	11	4.7	11	77	15	54	59	1	19	19	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46564640--46564906	104	2.6	104	81	4	288	20	29	23	25	1.99
46566379--46566416	20	1.9	20	88	0	58	34	26	10	28	1.90
46567195--46567223	13	2.1	14	93	6	51	65	0	0	34	0.93
46569379--46569408	7	4.3	7	95	0	51	23	0	0	76	0.78
46577940--46577999	30	2.0	30	83	6	77	30	26	6	36	1.82
46579634--46579670	18	2.1	18	94	0	65	54	0	40	5	1.24
46586373--46586429	25	2.3	24	80	14	62	35	7	1	56	1.37
46589374--46589444	36	2.0	36	85	0	97	40	8	8	42	1.66
46597648--46597694	24	2.0	23	83	4	58	42	2	4	51	1.33
46600677--46600750	29	2.5	28	78	10	69	59	1	0	39	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310