Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  274  of  310  ( 37082 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90492899--90492938
17
2.5
16
84
11
55
42
0
2
55
1.13
90495946--90495975
11
2.6
11
94
5
51
80
0
3
16
0.85
90500022--90500129
26
4.2
26
93
0
189
36
24
7
32
1.83
90505703--90505755
21
2.5
21
90
6
81
30
35
9
24
1.87
90506973--90507014
21
2.0
20
86
9
57
59
16
2
21
1.48
90517278--90517317
19
2.0
20
85
4
55
45
0
5
50
1.23
90521859--90521940
26
3.2
26
96
0
146
36
24
4
34
1.77
90522972--90523006
14
2.6
13
86
8
52
40
0
0
60
0.97
90525633--90525679
21
2.2
22
92
3
78
21
38
19
21
1.94
90533843--90533923
31
2.6
30
79
14
83
27
7
14
50
1.69
90533943--90533977
10
3.5
10
84
0
52
74
0
0
25
0.82
90534400--90534471
29
2.4
29
86
2
99
27
6
0
65
1.18
90534411--90534462
10
5.4
10
78
15
56
30
1
0
67
1.02
90534526--90534593
10
7.2
9
69
21
50
42
2
1
52
1.25
90534524--90534593
28
2.5
28
90
2
104
42
2
1
52
1.24
90538033--90538096
34
1.9
33
87
3
92
59
6
7
26
1.49
90541511--90541572
19
3.4
19
70
17
67
41
11
22
24
1.86
90541504--90541575
36
2.0
36
100
0
144
38
11
25
25
1.88
90551565--90551605
21
2.0
21
90
0
64
19
29
21
29
1.98
90556635--90556686
9
5.3
9
78
15
50
32
0
1
65
1.04
90559053--90559122
31
2.2
32
82
12
92
50
2
4
42
1.37
90567080--90567187
26
4.2
26
93
0
189
32
7
24
36
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90571993--90572034
18
2.3
19
88
12
61
69
4
0
26
1.08
90571993--90572111
56
2.2
55
90
6
188
63
11
0
23
1.33
90573857--90573906
21
2.4
21
96
0
91
26
30
28
16
1.96
90575724--90575779
24
2.3
25
96
3
105
32
8
7
51
1.60
90578461--90578528
34
2.0
34
100
0
136
41
14
14
29
1.86
90579363--90579434
36
2.0
36
100
0
144
36
11
13
38
1.81
90583433--90583495
31
2.0
32
90
3
101
38
17
9
34
1.82
90583594--90583624
16
1.9
16
100
0
62
32
0
3
64
1.09
90583596--90583631
16
2.2
16
90
0
54
33
2
2
61
1.25
90584716--90584746
15
2.1
15
100
0
62
38
25
12
22
1.90
90584755--90584796
20
2.1
20
90
0
66
30
16
11
40
1.85
90588164--90588198
18
1.9
18
88
0
52
20
20
28
31
1.97
90589440--90589470
15
2.1
15
100
0
62
38
25
12
22
1.90
90589479--90589520
20
2.1
20
86
0
57
28
16
14
40
1.88
90589945--90590063
63
1.9
63
91
1
195
36
8
6
48
1.60
90592259--90592318
31
1.9
32
86
3
86
43
15
5
36
1.68
90592418--90592455
16
2.4
16
90
0
58
31
7
0
60
1.25
90593469--90593518
27
1.9
25
84
15
66
46
12
26
16
1.81
90593537--90593573
19
1.9
19
89
10
58
21
5
10
62
1.48
90597016--90597044
10
2.7
11
94
5
51
82
0
0
17
0.66
90600332--90600647
125
2.5
125
83
2
404
38
16
14
30
1.89
90600732--90600786
23
2.6
21
83
11
67
54
7
3
34
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90600988--90601059
15
5.0
14
75
15
58
63
1
8
26
1.30
90601614--90601640
5
5.4
5
100
0
54
81
0
0
18
0.69
90602442--90602574
42
3.1
42
65
12
108
23
24
17
35
1.95
90602280--90603113
86
9.6
86
87
2
1064
20
23
20
35
1.96
90602614--90602841
42
5.3
42
65
19
121
19
23
21
35
1.95
90603184--90603307
64
1.9
64
95
0
221
38
16
15
29
1.89
90609152--90609376
125
1.8
125
87
0
333
39
15
15
30
1.88
90609197--90609462
125
2.1
124
84
4
349
38
16
14
30
1.88
90609765--90609867
29
3.6
29
71
14
79
66
0
4
29
1.13
90609792--90609837
15
3.3
14
82
17
60
73
0
0
26
0.83
90609792--90609884
15
7.0
14
70
15
56
66
0
5
27
1.13
90621655--90621684
13
2.3
13
94
0
51
60
3
0
36
1.14
90625911--90625967
19
3.1
19
80
14
66
61
0
1
36
1.07
90625915--90625973
27
2.1
28
84
3
75
59
1
1
37
1.18
90627072--90627158
18
4.8
18
91
0
138
27
24
16
32
1.96
90627069--90627158
36
2.5
36
96
0
162
26
23
17
32
1.97
90634361--90634405
21
2.0
23
83
8
58
40
0
4
55
1.20
90634361--90634449
23
4.0
22
72
11
74
40
0
7
51
1.31
90641079--90641180
51
2.0
51
96
0
186
31
11
27
29
1.92
90643410--90643460
12
4.6
11
77
22
54
33
0
3
62
1.13
90643725--90643767
22
2.0
22
95
0
77
34
0
20
44
1.52
90646334--90646460
40
3.2
41
86
2
143
29
25
20
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90649586--90649650
32
2.0
32
100
0
130
38
24
6
30
1.80
90651076--90651266
34
5.6
34
73
4
152
42
11
12
33
1.79
90651082--90651256
68
2.6
68
77
5
183
42
10
13
34
1.78
90656767--90656795
3
9.7
3
100
0
58
0
31
0
68
0.89
90659399--90659436
18
2.1
18
95
0
67
21
21
31
26
1.98
90659278--90659795
201
2.6
200
89
1
757
28
17
29
24
1.97
90663743--90663849
44
2.4
44
87
1
142
29
24
14
31
1.94
90670515--90670622
44
2.4
44
87
3
144
29
23
13
33
1.93
90674847--90674876
15
2.0
15
93
0
51
50
13
30
6
1.67
90675633--90675660
3
9.3
3
100
0
56
32
0
0
67
0.91
90675882--90676045
36
4.4
38
71
16
112
53
1
7
37
1.38
90676276--90676316
9
4.8
9
76
11
50
34
0
9
56
1.32
90676275--90676316
16
2.5
17
80
11
50
35
0
9
54
1.33
90678154--90678197
19
2.4
19
85
7
56
50
0
9
40
1.34
90680756--90680798
21
2.0
21
81
0
50
23
4
55
16
1.59
90686794--90686844
10
5.1
10
80
17
54
68
1
7
21
1.25
90686794--90686844
20
2.5
21
81
15
63
68
1
7
21
1.25
90688778--90688874
12
8.5
11
68
23
58
73
2
0
24
0.94
90688785--90688860
5
14.0
5
81
10
80
73
2
0
23
0.95
90688785--90688855
28
2.5
28
100
0
142
73
2
0
23
0.97
90688777--90688881
10
10.8
10
74
19
82
72
1
0
25
0.95
90688770--90688874
28
3.6
30
81
15
130
72
1
0
24
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90688785--90688881
33
2.9
34
83
8
130
73
2
0
24
0.94
90688781--90688901
8
16.0
7
73
19
68
73
1
1
23
1.01
90692451--90692510
29
2.1
29
100
0
120
35
25
6
33
1.82
90692534--90692593
20
3.0
19
79
16
68
66
3
8
21
1.33
90693039--90693085
21
2.1
23
84
11
62
44
2
4
48
1.34
90693161--90693190
13
2.2
14
94
5
53
63
0
0
36
0.95
90696608--90697129
132
4.0
131
78
4
469
28
19
17
34
1.95
90696798--90697117
133
2.4
134
80
2
351
26
20
17
35
1.94
90698308--90698478
86
2.0
86
95
0
306
43
16
21
19
1.88
90698756--90698803
19
2.5
19
100
0
96
20
20
14
43
1.87
90698740--90698793
24
2.2
24
83
6
65
20
24
14
40
1.90
90701356--90701400
4
12.2
4
86
13
62
77
0
22
0
0.76
90702391--90703505
88
12.7
88
81
3
1035
29
15
29
25
1.96
90702391--90703510
132
8.5
132
82
3
1074
29
15
29
25
1.96
90702391--90703530
44
25.9
44
80
5
859
29
15
29
25
1.96
90706555--90707064
132
3.9
131
81
3
504
28
19
17
34
1.95
90712169--90712225
29
2.0
29
92
0
96
57
3
12
26
1.50
90714372--90714416
22
2.1
21
87
4
63
40
0
2
57
1.11
90714340--90714416
29
2.7
26
72
20
66
37
0
3
58
1.17
90715515--90715555
21
2.0
21
95
0
73
31
4
4
58
1.40
90717270--90717310
19
2.2
19
100
0
82
21
9
43
24
1.83
90718278--90718310
14
2.3
15
89
5
50
30
0
0
69
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90725642--90725703
28
2.2
28
97
0
115
27
16
16
40
1.89
90728181--90728230
25
2.0
25
96
0
91
26
4
22
48
1.68
90729264--90729307
19
2.4
18
77
7
52
54
4
0
40
1.21
90730217--90730248
15
2.1
15
100
0
64
59
12
6
21
1.55
90730265--90730327
30
2.1
30
96
0
117
60
15
0
23
1.35
90732320--90732354
4
8.8
4
100
0
70
77
0
0
22
0.78
90738679--90738723
22
2.0
22
95
0
81
35
6
13
44
1.70
90740478--90740508
16
1.9
16
93
0
53
48
9
6
35
1.62
90740601--90740714
10
10.8
10
68
14
59
34
1
3
60
1.24
90743355--90743392
11
3.3
12
82
14
53
36
0
0
63
0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310