genome.fa.s13.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  119  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38174442--38174483	15	2.8	16	79	13	54	45	4	0	50	1.23
38173693--38176491	592	4.7	588	81	5	3214	38	13	14	34	1.85
38176448--38176481	10	3.3	10	84	8	50	47	11	0	41	1.40
38179595--38179679	35	2.4	36	80	4	100	31	8	21	38	1.83
38187271--38187355	35	2.4	36	84	4	118	31	10	18	38	1.85
38187287--38187366	35	2.3	35	84	2	106	28	12	20	38	1.89
38187518--38187622	55	1.9	55	98	0	201	33	1	20	44	1.62
38188768--38189100	48	6.9	50	75	9	273	25	28	18	28	1.98
38188765--38189099	144	2.3	145	84	3	442	25	28	18	28	1.98
38188768--38189100	96	3.4	96	84	1	398	25	28	18	28	1.98
38197071--38197113	20	2.1	20	86	4	59	62	0	20	16	1.32
38197868--38197892	13	1.9	13	100	0	50	32	20	16	32	1.94
38198441--38198618	27	6.6	27	83	3	205	26	15	28	29	1.96
38198442--38198597	82	1.9	81	88	3	233	26	15	28	29	1.96
38198438--38198618	82	2.2	81	83	2	229	27	15	27	29	1.96
38198523--38198629	27	3.9	27	85	1	70	26	14	28	30	1.95
38205158--38205280	50	2.5	51	90	2	187	47	8	25	18	1.76
38206249--38206495	123	2.0	123	99	0	485	30	12	21	35	1.90
38206611--38206826	40	5.4	40	89	2	278	24	22	26	25	2.00
38212928--38213071	9	16.0	9	67	17	59	37	2	16	43	1.60
38212965--38213071	18	5.8	18	69	12	74	38	2	16	42	1.63
38213285--38213333	16	3.0	17	91	8	84	65	12	10	12	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38216621--38217610	47	21.1	47	98	0	1901	27	29	10	32	1.90
38221013--38221090	40	2.0	40	86	0	111	26	24	14	34	1.93
38221267--38221317	15	3.3	15	78	8	50	43	0	1	54	1.11
38222165--38222253	38	2.3	40	84	3	119	43	25	1	29	1.62
38222450--38222490	21	1.9	22	85	5	57	29	0	24	46	1.53
38226669--38227084	41	10.2	41	82	4	475	25	17	23	33	1.96
38226669--38227071	81	4.9	80	83	6	219	25	16	23	34	1.95
38226669--38227084	122	3.4	122	84	4	493	25	17	23	33	1.96
38228402--38228570	93	1.8	93	86	0	248	31	24	18	25	1.98
38228393--38228616	46	4.8	46	74	5	218	30	25	18	25	1.98
38230310--38230459	43	3.5	42	81	7	160	30	27	17	24	1.97
38230950--38231016	29	2.4	29	79	16	70	25	17	4	52	1.64
38231383--38231804	211	2.0	211	92	0	711	27	21	18	32	1.96
38232723--38232900	27	6.6	27	82	3	178	29	28	15	26	1.96
38234927--38235035	55	2.0	55	98	0	209	44	14	11	30	1.80
38235567--38235711	61	2.3	62	84	2	184	33	20	14	31	1.93
38236681--38236736	15	3.7	15	86	9	87	60	10	16	12	1.58
38239482--38240781	47	27.6	47	88	0	1854	26	29	10	33	1.89
38239503--38240781	94	13.6	94	96	1	2215	26	29	10	33	1.89
38244490--38244662	46	3.7	46	75	13	183	30	28	20	21	1.98
38244496--38244666	93	1.8	93	91	0	279	29	29	20	21	1.98
38246580--38246642	15	4.2	15	82	8	83	60	14	12	12	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38249601--38249769	46	3.7	46	76	12	184	28	27	20	23	1.99
38249606--38249776	93	1.8	93	92	2	290	28	27	21	23	1.99
38252167--38252252	32	2.6	33	76	9	86	29	25	18	26	1.98
38252563--38252615	26	2.0	26	82	7	63	22	16	20	39	1.92
38253868--38253991	24	5.2	23	88	4	149	20	36	4	38	1.74
38253862--38253991	48	2.7	48	87	1	197	19	36	5	38	1.75
38255588--38255811	40	5.6	40	85	3	288	24	23	26	25	2.00
38255592--38255811	83	2.7	80	88	4	300	24	24	26	25	2.00
38260820--38260865	23	2.0	23	91	4	76	47	17	4	30	1.67
38260847--38260897	19	2.9	17	83	11	66	35	17	9	37	1.83
38260820--38260875	22	2.5	23	88	5	80	44	17	3	33	1.66
38260831--38260888	19	2.8	20	84	10	64	39	17	6	36	1.76
38265984--38266028	19	2.5	17	80	13	54	35	20	2	42	1.64
38281442--38281508	33	2.0	33	97	0	125	40	5	25	28	1.79
38282111--38282288	27	6.6	26	80	6	169	26	15	28	28	1.96
38282112--38282267	82	1.9	81	86	3	224	26	16	28	28	1.97
38282108--38282288	82	2.2	81	82	2	220	27	16	28	28	1.97
38288848--38289181	167	2.0	166	98	0	650	33	14	26	25	1.95
38290268--38290445	27	6.6	26	80	6	169	26	16	28	28	1.97
38290269--38290424	82	1.9	81	86	3	224	26	16	28	28	1.97
38290265--38290445	82	2.2	81	82	2	220	26	16	28	28	1.97
38291356--38291655	150	2.0	150	96	0	555	31	19	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38291870--38292028	83	1.9	83	97	0	300	20	16	29	33	1.95
38296494--38296601	56	1.9	56	90	0	171	25	22	21	31	1.98
38297757--38297857	49	2.1	49	94	0	175	28	13	22	34	1.93
38298178--38298291	56	2.0	56	100	0	228	24	17	19	38	1.93
38298607--38298790	79	2.3	81	81	7	216	25	22	27	25	2.00
38298606--38298790	40	4.7	40	82	6	216	24	22	27	25	2.00
38298659--38298813	79	2.0	79	82	7	190	26	20	27	25	1.99
38299507--38299610	52	2.0	52	86	0	145	34	14	25	25	1.94
38299917--38300016	51	2.0	51	92	4	166	29	19	29	23	1.98
38300251--38300364	57	2.0	57	100	0	228	22	19	31	26	1.98
38306787--38306964	27	6.6	27	83	3	205	26	15	28	29	1.96
38306788--38306943	82	1.9	81	88	3	233	26	15	28	29	1.96
38306784--38306964	82	2.2	81	83	2	229	27	15	27	29	1.96
38309560--38309719	42	3.8	42	84	3	196	28	27	15	28	1.96
38311428--38311473	10	4.5	10	83	2	56	26	2	23	47	1.63
38312211--38312248	20	1.9	20	88	0	58	44	15	18	21	1.86
38321583--38321615	3	11.0	3	93	0	57	33	63	0	3	1.10
38326617--38326658	15	2.7	16	82	14	52	52	2	0	45	1.13
38326626--38326667	15	2.9	15	82	10	52	52	0	0	47	1.00
38330245--38330414	93	1.8	93	93	0	295	30	28	19	22	1.98
38330236--38330411	46	3.8	46	77	12	198	30	28	19	21	1.97
38336852--38336881	16	1.9	16	93	6	53	50	20	0	30	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38338493--38338554	24	2.6	24	82	7	74	38	19	24	17	1.93
38338594--38338660	26	2.6	26	83	6	75	35	19	26	17	1.94
38343773--38344039	94	2.9	93	78	8	240	26	18	30	24	1.98
38347416--38347556	40	3.6	39	83	8	153	24	21	29	25	1.99
38347465--38347589	39	3.2	39	81	3	144	26	20	27	26	1.99
38351108--38351292	40	4.6	41	83	7	222	24	27	22	24	2.00
38351108--38351292	79	2.3	82	83	7	229	24	27	22	24	2.00
38360711--38360767	25	2.3	25	81	3	71	29	24	21	24	1.99
38363176--38363203	13	2.2	13	100	0	56	71	0	14	14	1.15
38366197--38366252	29	2.0	28	96	3	103	32	28	17	21	1.96
38370347--38370371	13	1.9	13	100	0	50	36	16	8	40	1.77
38370685--38370898	54	4.0	54	84	4	252	22	25	16	35	1.95
38370871--38371121	47	5.4	46	76	7	202	23	24	17	34	1.96
38371098--38371138	10	4.2	10	78	15	50	24	17	21	36	1.94
38371102--38371139	18	2.1	18	100	0	76	28	15	21	34	1.94
38371046--38371133	45	2.0	45	83	0	113	22	25	18	34	1.96
38374955--38375087	48	2.8	48	77	0	158	26	18	27	27	1.98
38376894--38377030	48	2.9	48	84	0	175	27	22	22	27	1.99
38376860--38377030	96	1.8	93	84	10	233	27	22	23	26	1.99
38381764--38381987	40	5.6	40	85	6	292	25	26	23	24	2.00
38381764--38381987	83	2.8	80	87	5	292	25	26	23	24	2.00
38389900--38390123	40	5.6	40	83	8	276	26	27	22	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38389900--38390123	83	2.8	81	84	8	271	26	27	22	23	2.00
38391639--38391861	79	2.8	78	83	7	272	24	27	22	25	2.00
38391639--38391861	39	5.7	40	87	6	280	24	27	22	25	2.00
38399616--38399877	39	6.7	40	88	7	337	24	27	22	25	2.00
38407961--38408012	26	2.0	26	96	0	95	25	30	25	19	1.98
38417936--38417979	22	2.0	22	90	0	70	25	36	2	36	1.69
38418961--38419013	23	2.4	21	75	12	52	7	18	3	69	1.28
38419202--38419365	82	2.0	82	95	0	292	26	25	20	28	1.99
38427689--38427732	21	2.0	22	86	4	63	25	6	34	34	1.82
38436250--38436287	10	3.8	10	83	13	51	21	18	31	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310